A recombinase polymerase amplification assay for rapid detection of Crimean-Congo Haemorrhagic fever Virus infection

PLoS Neglected Tropical Diseases

Volumn 11, Issue 10, 2017, Pages

  Bonney, Laura C ^a   Watson, Robert J ^a   Afrough, Babak ^a   Mullojonova, Manija ^b   Dzhuraeva, Viktoriya ^b   Tishkova, Farida ^b   Hewson, Roger ^a  

^a PUBLIC HEALTH ENGLAND   (United Kingdom)

^b Tajik Research Institute of Preventive Medicine of the Ministry of Health of the Republic of Tajikistan   (Tajikistan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; SYNTHETIC DNA; VIRUS RNA; RECOMBINASE;

AGAR GEL ELECTROPHORESIS; ARTICLE; CONTROLLED STUDY; CRIMEAN CONGO HEMORRHAGIC FEVER; CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS; DNA SEQUENCE; EXPERIMENTAL DESIGN; GENETIC ANALYSIS; HUMAN; LIMIT OF DETECTION; MOLECULAR DIAGNOSIS; REAL TIME POLYMERASE CHAIN REACTION; RECOMBINASE POLYMERASE AMPLIFICATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; AFRICA; ASIA; DEVICES; ECONOMICS; ENZYMOLOGY; EUROPE; GENETICS; HEMORRHAGIC FEVER, CRIMEAN; ISOLATION AND PURIFICATION; METABOLISM; MIDDLE EAST; NAIROVIRUS; NUCLEIC ACID AMPLIFICATION; POINT OF CARE SYSTEM; PROCEDURES; SENSITIVITY AND SPECIFICITY; TAJIKISTAN; TIME FACTOR; VIROLOGY;

AFRICA; ASIA; EUROPE; HEMORRHAGIC FEVER VIRUS, CRIMEAN-CONGO; HEMORRHAGIC FEVER, CRIMEAN; HUMANS; MIDDLE EAST; MOLECULAR DIAGNOSTIC TECHNIQUES; NUCLEIC ACID AMPLIFICATION TECHNIQUES; POINT-OF-CARE SYSTEMS; RECOMBINASES; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; TAJIKISTAN; TIME FACTORS;

EID: 85032618818     PISSN: 19352727     EISSN: 19352735     Source Type: Journal    
DOI: 10.1371/journal.pntd.0006013     Document Type: Article

References (36)

1. Bente DA, Forrester NL, Watts DM, McAuley AJ, Whitehouse CA, Bray M, Crimean-Congo hemorrhagic fever: history, epidemiology, pathogenesis, clinical syndrome and genetic diversity. Antiviral Res. 2013; 100(1): p. 159–189. doi: 10.1016/j.antiviral.2013.07.006 23906741
2. Atkinson B, Latham J, Chamberlain J, Logue C, O'Donoghue L, Osborne J, et al. Sequencing and phylogenetic characterisation of a fatal Crimean–Congo haemorrhagic fever case imported into the United Kingdom, October 2012. Euro Surveill. 2012; 17(48): p. 20327. 23218389
3. Morikawa S, Saijo M, Kurane I, Recent progress in molecular biology of Crimean-Congo hemorrhagic fever. Comp Immunol Microbiol Infect Dis. 2007; 30(5–6): p.375–389. doi: 10.1016/j.cimid.2007.07.001 17692916
4. Zehender G, Ebranati E, Shkjezi R, Papa A, Luzzago C, Gabanelli E, et al. Bayesian phylogeography of Crimean-Congo hemorrhagic fever virus in Europe. PloS One. 2013; 8(11): e79663doi: 10.1371/journal.pone.0079663 24223988
5. Messina JP, Pigott DM, Golding N, Duda KA, Brownstein JS, Weiss DJ, et al. The global distribution of Crimean-Congo hemorrhagic fever. Trans R Soc Trop Med Hyg. 2015; 109(8): p. 503–513. doi: 10.1093/trstmh/trv050 26142451
6. Sherifi K, Cadar D, Muji S, Robaj A, Ahmeti S, Jakupi X, et al. Crimean-Congo Hemorrhagic Fever Virus Clades V and VI (Europe 1 and 2) in Ticks in Kosovo, 2012. PLoS Negl Trop Dis. 2014; 8(9): p. e3168. doi: 10.1371/journal.pntd.0003168 25255381
7. Messina JP, Pigott DM, Duda KA, Brownstein JS, Myers MF, George DB, et al. A global compendium of human Crimean-Congo haemorrhagic fever virus occurrence. Sci Data. 2015; 2: p. 150016. doi: 10.1038/sdata.2015.16 25977820
8. Al-Abri SS, Abaidani IA, Fazlalipour M, Mostafavi E, Leblebicioglu H, Pshenichnaya N, et al. Current status of Crimean-Congo haemorrhagic fever in the World Health Organization Eastern Mediterranean Region: issues, challenges, and future directions. Int J Infect Dis. 2017; 58: p. 82–89. doi: 10.1016/j.ijid.2017.02.018 28259724
9. Maltezou HC, Andonova L, Andraghetti R, Bouloy M, Ergonul O, Jongejan F, et al. Crimean-Congo hemorrhagic fever in europe: current situation calls for preparedness. Euro surveill. 2010; 15(10): p. 19504. 20403306
10. Conger NG, Paolino KM, Osborn EC, Rusnak JM, Günther S, Pool J, et al. Health Care Response to CCHF in US Soldier and Nosocomial Transmission to Health Care Providers, Germany, 2009. Emerg Infect Dis. 2015; 21(1): p. 23–31. doi: 10.3201/eid2101.141413 25529825
11. Ince Y, Yasa C, Metin M, Sonmez M, Meram E, Benkli B, et al. Crimean-Congo hemorrhagic fever infections reported by ProMED. Int J Infect Dis. 2014; 26: p. 44–46. doi: 10.1016/j.ijid.2014.04.005 24947424
12. Appannanavar SB, Mishra B, An Update on Crimean Congo Hemorrhagic Fever. J Glob Infect Dis. 2011; 3(3): p. 285–292. doi: 10.4103/0974-777X.83537 21887063
13. Spengler JR, Bergeron E, Rollin PE, Seroepidemiological Studies of Crimean-Congo Hemorrhagic Fever Virus in Domestic and Wild Animals. PLoS Negl Trop Dis. 2016; 10(1): p. e0004210. doi: 10.1371/journal.pntd.0004210 26741652
14. Spengler JR, Estrada-Peña A, Garrison AR, Schmaljohn C, Spiropoulou CF, Bergeron É, et al. A chronological review of experimental infection studies of the role of wild animals and livestock in the maintenance and transmission of Crimean-Congo hemorrhagic fever virus. Antiviral Res. 2016; 135: p. 31–47doi: 10.1016/j.antiviral.2016.09.013 27713073
15. Craw P, Balachandran W, Isothermal nucleic acid amplification technologies for point-of-care diagnostics: a critical review. Lab Chip. 2012; 12(14): p. 2469–2486. doi: 10.1039/c2lc40100b 22592150
16. Yan L, Zhou J, Zheng Y, Gamson AS, Roembke BT, Nakayama S, et al. Isothermal amplified detection of DNA and RNA. Mol Biosyst. 2014; 10(5): p. 970–1003. doi: 10.1039/c3mb70304e 24643211
17. Cao Z, Wang H, Wang L, Li L, Jin H, Xu C, et al. Visual Detection of West Nile Virus Using Reverse Transcription Loop-Mediated Isothermal Amplification Combined with a Vertical Flow Visualization Strip. Front Microbiol. 2016; 7: p. 554. doi: 10.3389/fmicb.2016.00554 27148234
18. Toley BJ, Covelli I, Belousov Y, Ramachandran S, Kline E, Scarr N, et al. Isothermal strand displacement amplification (iSDA): a rapid and sensitive method of nucleic acid amplification for point-of-care diagnosis. Analyst. 2015; 140(22): p. 7540–7549. doi: 10.1039/c5an01632k 26393240
19. Marciniak J, Kummel A, Esener S, Heller M, Messmer B, Coupled rolling circle amplification loop-mediated amplification for rapid detection of short DNA sequences. BioTechniques. 2008; 45(3): p. 275–280. doi: 10.2144/000112910 18778251
20. Euler M, Wang Y, Otto P, Tomaso H, Escudero R, Anda P, et al. Recombinase polymerase amplification assay for rapid detection of Francisella tularensis. J Clin Microbiol. 2012; 50(7): p. 2234–2238. doi: 10.1128/JCM.06504-11 22518861
21. Euler M, Wang Y, Heidenreich D, Patel P, Strohmeier O, Hakenberg S, et al. Development of a panel of recombinase polymerase amplification assays for detection of biothreat agents. J Clin Microbiol. 2013; 51(4): p. 1110–1117. doi: 10.1128/JCM.02704-12 23345286
22. Abd El Wahed A, Patel P, Faye O, Thaloengsok S, Heidenreich D, Matangkasombut P, et al. Recombinase Polymerase Amplification Assay for Rapid Diagnostics of Dengue Infection. PLoS One. 2015; 10(6): p. e0129682. doi: 10.1371/journal.pone.0129682 26075598
23. Teoh BT, Sam SS, Tan KK, Danlami MB, Shu MH, Johari J, et al. Early Detection of Dengue Virus by Use of Reverse Transcription-Recombinase Polymerase Amplification. J Clin Microbiol. 2015; 53(3): p. 830–837. doi: 10.1128/JCM.02648-14 25568438
24. Yang Y, Qin X, Wang G, Zhang Y, Shang Y, Zhang Z, Development of a fluorescent probe-based recombinase polymerase amplification assay for rapid detection of Orf virus. Virol J. 2015; 12: p. 206. doi: 10.1186/s12985-015-0440-z 26631157
25. Kersting S, Rausch V, Bier FF, von Nickisch-Rosenegk M, Rapid detection of Plasmodium falciparum with isothermal recombinase polymerase amplification and lateralflow analysis. Malar J. 2014; 13: p. 99. doi: 10.1186/1475-2875-13-99 24629133
26. Rosser A, Rollinson D, Forrest M, Webster BL, Isothermal Recombinase Polymerase amplification (RPA) of Schistosoma haematobium DNA and oligochromatographic lateral flow detection. Parasit Vectors. 2015; 8: p. 446. doi: 10.1186/s13071-015-1055-3 26338510
27. Daher RK, Stewart G, Boissinot M, Bergeron MG, Recombinase Polymerase Amplification for Diagnostic Applications. Clin Chem. 2016; 62(7): p. 947–958. doi: 10.1373/clinchem.2015.245829 27160000
28. Mekuria TA, Zhang S, Eastwell KC, Rapid and sensitive detection of little cherry virus 2 using isothermal reverse transcription-recombinase polymerase amplification. J Virol Methods. 2014; 205: p. 24–30. doi: 10.1016/j.jviromet.2014.04.015 24797461
29. Krõlov K, Frolova J, Tudoran O, Suhorutsenko J, Lehto T, Sibul H, et al. Sensitive and rapid detection of Chlamydia trachomatis by recombinase polymerase amplification directly from urine samples. J Mol Diagn. 2014; 16(1): p. 127–135. doi: 10.1016/j.jmoldx.2013.08.003 24331366
30. Rohrman B, Richards-Kortum R, Inhibition of recombinase polymerase amplification by background DNA: a lateral flow-based method for enriching target DNA. Anal Chem. 2015; 87(3): p. 1963–1967. doi: 10.1021/ac504365v 25560368
31. Atkinson B, Chamberlain J, Logue CH, Cook N, Bruce C, Dowall SD, et al. Development of a Real-Time RT-PCR Assay for the Detection of Crimean-Congo Hemorrhagic Fever Virus. Vector Borne Zoonotic Dis. 2012; 12(9): p. 786–793. doi: 10.1089/vbz.2011.0770 22217175
32. Edwards T, Burke PA, Smalley HB, Gillies L, Hobbs G, Loop-Mediated Isothermal Amplification Test for Detection of Neisseria gonorrhoeae in Urine Samples and Tolerance of the Assay to the Presence of Urea. J Clin Microbiol. 2014; 52(6): p. 2163–2165. doi: 10.1128/JCM.00314-14 24622100
33. Kogovšek P, Hodgetts J, Hall J, Prezelj N, Nikolić P, Mehle N, et al. LAMP assay and rapid sample preparation method for on-site detection of flavescence dorée phytoplasma in grapevine. Plant Pathol. 2015; 64(2): p. 286–296. doi: 10.1111/ppa.12266 26146413
34. Hayashida K, Kajino K, Hachaambwa L, Namangala B, Sugimoto C, Direct Blood Dry LAMP: A Rapid, Stable, and Easy Diagnostic Tool for Human African Trypanosomiasis. PLoS Negl Trop Dis. 2015; 9(3): p. e0003578. doi: 10.1371/journal.pntd.0003578 25769046
35. Tishkova FH, Belobrova EA, Valikhodzhaeva M, Atkinson B, Hewson R, Mullojonova M, Crimean-Congo Hemorrhagic Fever in Tajikistan. Vector Borne Zoonotic Dis. 2012; 12(9): p. 722–726. doi: 10.1089/vbz.2011.0769 22217164
36. Kurosaki Y, Magassouba N, Oloniniyi OK, Cherif MS, Sakabe S, Takada A, et al. Development and Evaluation of Reverse Transcription-Loop-Mediated Isothermal Amplification (RT-LAMP) Assay Coupled with a Portable Device for Rapid Diagnosis of Ebola Virus Disease in Guinea. PLOS Negl Trop Dis. 2016; 10(2): p. e0004472. doi: 10.1371/journal.pntd.0004472 26900929