Simultaneous detection and identification of enteric viruses by PCR-Mass assay

PLoS ONE

Volumn 7, Issue 8, 2012, Pages

  Piao, Jingzi ^a,b   Jiang, Jun ^c   Xu, Bianli ^d   Wang, Xiaohong ^b   Guan, Yanfang ^e   Wu, Weili ^c   Liu, Licheng ^e   Zhang, Yuan ^c   Huang, Xueyong ^d   Wang, Pengzhi ^e   Zhao, Jinyin ^c   Kang, Xiaoping ^b   Jiang, Hua ^b   Cao, Yuanyin ^a   Zheng, Yuling ^b   Jiang, Yongqiang ^b   Li, Yan ^b   Yang, Yinhui ^b   Chen, Weijun ^b,c,e  

^a SHENYANG AGRICULTURAL UNIVERSITY   (China)

^b BEIJING INSTITUTE OF MICROBIOLOGY AND EPIDEMIOLOGY   (China)

^c Chinese Academy of Sciences and China National Center for Bioinformation   (China)

^d CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^e BGI SHENZHEN   (China)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ARTICLE; ASTROVIRUS; CLINICAL ASSESSMENT; CONTROLLED STUDY; COXSACKIE VIRUS A; ECHO VIRUS; ENTERIC VIRUS; ENTEROVIRUS 71; HAND FOOT AND MOUTH DISEASE; HEPATITIS E VIRUS; INTERMETHOD COMPARISON; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MULTIPLEX POLYMERASE CHAIN REACTION; MULTIPLEX POLYMERASE CHAIN REACTION MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; NOROVIRUS; POLIOMYELITIS VIRUS; REAL TIME POLYMERASE CHAIN REACTION; REAL TIME REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; REOVIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; VIRUS DETECTION; VIRUS IDENTIFICATION; VIRUS ISOLATION;

FEMALE; HUMANS; MALE; MULTIPLEX POLYMERASE CHAIN REACTION; RNA VIRUS INFECTIONS; RNA VIRUSES; RNA, VIRAL;

EID: 84864771218     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0042251     Document Type: Article

References (24)

1. Briese T, Palacios G, Kokoris M, Jabado O, Liu Z, et al. (2005) Diagnostic system for rapid and sensitive differential detection of pathogens. Emerg. Infect. Dis11: 310-313.
2. Liu J, Kibiki G, Maro V, Maro A, Kumburu H, et al. (2011) Multiplex reverse transcription PCR Luminex assay for detection and quantitation of viral agents of gastroenteritis. J. Clin. Virol50: 308-313.
3. Tu PV, Thao NTT, Perera D, Huu TK, Tien NTK, et al. (2007) Epidemiologic and virologic investigation of hand, foot, and mouth disease, Southern Vietnam, 2005. Emerg. Infect. Dis13: 1733-1741.
4. Liu CC, Tseng HW, Wang SM, Wang JR, Su IJ, (2000) An outbreak of enterovirus 71 infection in Taiwan (1998) epidemiologic and clinical manifestations. J. Clin. Virol17: 23-30.
5. Chan KP, Goh KT, Chong CY, Teo ES, Lau G, et al. (2003) Epidemic hand, foot and mouth disease caused by human enterovirus 71, Singapore. Emerg. Infect. Dis9: 78-85.
6. Cardosa MJ, Perera D, Brown BA, Cheon D, Chan HM, et al. (2003) Molecular epidemiology of human enterovirus 71 strains and recent outbreaks in the Asia-Pacific region: comparative analysis of the VP1 and VP4 genes. Emerg. Infect. Dis9: 461-468.
7. Thao NTT, Ngoc NTK, Tu PV, Thuy TT, Cardosa MJ, et al. (2010) Development of a multiplex polymerase chain reaction assay for simultaneous identification of human enterovirus 71 and coxsackievirus A16. J. Viral. Methods170 (1-2): 134-139.
8. Chen TC, Chen GW, Hsiung CA, Yang JY, Shih SR, et al. (2006) Combining multiplex reverse transcription-PCR and a diagnostic microarray to detect and differentiate enterovirus 71 and coxsackievirus A16. J. Clin. Micro44: 2212-2219.
9. Hong SP, Kim NK, Hwang SG, Chung HJ, Kim S, et al. (2004) Detection of hepatitis B virus YMDD variants using mass spectrometric analysis of oligonucleotide fragments. J Hepatol40: 837-844.
10. Ilina EN, Malakhova MV, Generozov EV, Nikolaev EN, Goverun VM, (2005) Matrix-assisted laser desorption ionization-time of flight (mass spectrometry) for hepatitis C virus genotyping. J Clin. Micro43: 2810-2815.
11. Seng P, Drancourt M, Gouriet F, Scola BL, Fournier PE, et al. (2009) Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin. Infect. Dis49: 543-551.
12. Sun PH, Shin SK, Lee EH, Kim EO, Ji SI, et al. (2008) High-resolution human papillomavirus genotyping by MALDI-TOF mass spectrometry. Nat Protoc 3: 1476-1484.
13. Patel DA, Shih YJ, Newton DW, Michael CW, Oeth PA, et al. (2009) Development and evaluation of a PCR and mass spectroscopy (PCR-MS)-based method for quantitative, type-specific detection of human papillomavirus. J Virol. Method160: 78-84.
14. Dominguez SR, Briese T, Palacios G, Hui J, Villari J, et al. (2008) Multiplex MassTag-PCR for respiratory pathogens in pediatric nasopharyngeal washes negative by conventional diagnostic testing shows a high prevalence of viruses belonging to a newly recognized rhinovirus clade. J Clin. Virol43: 219-222.
15. Tost J, Gut IG, (2005) Genotyping single nucleotide polymorphisms by MALDI mass spectrometry in clinical applications. Clin. Biochem38: 335-350.
16. Sauer S, (2006) Typing of single nucleotide polymorphisms by MALDI mass spectrometry: principles and diagnostic applications. Clin. Chim. Acta363: 95-105.
17. Ragoussis J, Elvidge GP, Kaur K, Colella S, (2006) Matrix-assisted laser desorption/ionization, time-of-flight mass spectrometry in genomics research. PLoS Genet7 (2): e100.
18. Stenos J, Graves SR, Unsworth NB, (2005) A highly sensitive and specific real-time PCR assay for the detection of spotted fever and typhus group rickettsiae. Am. J. Trop. Med. Hyg73: 1083-1085.
19. Xiao XL, He YQ, Yu YG, Yang H, Chen G, et al. (2009) Simultaneous detection of human enterovirus 71 and coxsachievirus A16 in clinical specimens by multiplex real-time PCR with an internal amplification control. Arch. Virol154: 121-125.
20. Russo DH, Luchs A, Machado BC, Carmona RC, Timenetsky MDCS, (2006) Echovirus 4 associated to hand, foot and mouth disease. Rev. Inst. Med. Trop. S. Paulo48 (4): 197-199.
21. Blomqvist S, Klemola P, Kaijalainen S, Paananen A, Simonen ML, et al. (2010) Co-circulation of coxsackieviruses A6 and A10 in hand, foot and mouth disease outbreak in Finland. J. Clin. Virol48: 49-54.
22. Cardosa MJ, Krishnan S, Tio PH, Perera D, Wong SC, (1999) Isolation of subgenus B adenovirus during a fatal outbreak of enterovirus 71-associated hand, foot, and mouth disease in Sibu, Sarawak. Lancet354: 987-991.
23. Han JF, Cao RY, Jiang T, Yu M, Liu W, et al. (2011) Echovirus 30 in EV71-associated hand, foot and mouth disease outbreak, Guangxi, China. J. Clin. Virol50: 348-349.
24. Yang F, Du J, Hu Y, Wang X, Xue Y, et al. (2011) Enterovirus coinfection during an outbreak of hand, foot, and mouth disease in Shandong, China. Clin. Infect. Dis 53 (4): 400-401.