Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development

Plant Journal

Volumn 9, Issue 5, 1996, Pages 745-753

  Bachem, Christian W B ^a,b   Van Der Hoeven, Rutger S ^a   De Bruijn, Steef M ^a   Vreugdenhil, Dick ^a   Zabeau, Marc ^b   Visser, Richard G F ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b KEYGENE N V   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

SOLANUM TUBEROSUM;

CARBOXYLESTERASE; COMPLEMENTARY DNA; GLUCOSE 1 PHOSPHATE ADENYLYLTRANSFERASE; MESSENGER RNA; NUCLEOTIDYLTRANSFERASE; PATATIN PROTEIN, SOLANUM TUBEROSUM; PLANT RNA; PRIMER DNA; STARCH; VEGETABLE PROTEIN;

ARTICLE; BIOSYNTHESIS; COMPARATIVE STUDY; GENE; GENE EXPRESSION REGULATION; GENETIC PROCEDURES; GENETIC TRANSCRIPTION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; POLYMERASE CHAIN REACTION; POTATO; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE HOMOLOGY; TIME;

BASE SEQUENCE; CARBOXYLIC ESTER HYDROLASES; CLONING, MOLECULAR; DNA PRIMERS; DNA, COMPLEMENTARY; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENETIC TECHNIQUES; GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE; MOLECULAR SEQUENCE DATA; NUCLEOTIDYLTRANSFERASES; PLANT PROTEINS; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, MESSENGER; RNA, PLANT; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOLANUM TUBEROSUM; STARCH; TIME FACTORS; TRANSCRIPTION, GENETIC;

EID: 0030138199     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.1996.9050745.x     Document Type: Article

References (28)

1. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
2. Bostock, K.M., Yamamoto, H., Choi, D., Ricker, K.E. and Ward, B.L. (1992) Rapid stimulation of 5-lipoxygenase activity in potato tubers by the fungal elicitor arachidonic acid. Plant Physiol. 100, 1448-1456.
3. Bourque, J.E., Miller, J.C. and Park, W.D. (1987) Use of an in vitro tuberization system to study tuber protein gene expression. In Vitro Cell Devel. Biol. 23, 381-387.
4. Casey, R. (1995) Sequence of a cDNA clone encoding a potato (Solanum tuberosum) tuber lipoxygenase. Plant Physiol. 107, 265-266.
5. Feltkamp, D., Masterson, R., Starke, J. and Rosahl, S. (1994) Analysis of the involvement of ocs-like bZip binding elements in the differential strength of the bi-directional mas1′2′ promoter. Plant Physiol. 105, 259-268.
6. Geerts, A., Feltkamp, D. and Rosahl, S. (1994) Expression of lipoxygenase in wounded tuber of Solanum tuberosum L. Plant Physiol. 105, 269-277.
7. Gregory, L.E. (1956) Physiology of tuberization in plants, tubers and tuberous roots. In Encyclopedia of Plant Physiology, Volume 15 (Ruhland, W., ed.) Berlin: Springer Verlag, pp. 1328-1354.
8. Hannapel, D.J. (1991) Characterization of the early events of potato tuber development. Plant Physiol. 83, 568-573.
9. Hendriks, T., Vreugdenhil, D. and Stiekema, W.J. (1991) Patatin and four serine proteinase inhibitor genes are differentially expressed during potato tuber development. Plant Mol. Biol. 17, 385-394.
10. Jackson, S., Sonnewald, U. and Willmitzer, L. (1993) Characterization of a gene that is expressed in leaves at higher levels upon tuberization in potato and upon flowering in tobacco. Planta, 189, 593-596.
11. Koda, Y., Kikuta, Y., Tazaki, H., Tsujino, Y., Sakamura, S. and Yoshihara, T. (1991) Potato tuber inducing activities of jasmonic acid and related compounds. Phytochemistry, 30, 1435-1438.
12. Liang, P. and Pardee, A.B. (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science, 257, 967-971.
13. McClelland, M., Mathieu-Daude, F. and Welsh, J. (1995) RNA fingerprinting and differential display using arbitrarily primed PCR. Trends Genet. 11, 242-246.
14. Müller-Röber, B., Sonnewald, U. and Willmitzer, L. (1992) Inhibition of the ADP-glucose pyrophosphorylase in transgenic potatoes leads to sugar-storing tubers and influences tuber formation and expression of tuber storage protein genes. EMBO J. 11, 1229-1238.
15. Nakata, P.A., Greene, T.W., Anderson, J.M., Smith-White, B.J., Okita, T.W. and Preiss, J. (1991) Comparison of the primary sequences of two potato tuber ADP-glucose pyrophosphorylase subunits. Plant Mol. Biol. 17, 1089-1093
16. Paiva, E., Lister, R.M. and Park, W.D. (1982) Comparison of the protein in axillary bud tubers and underground stolon tubers in potato. Am. Potato J. 59, 425-433.
17. Park, W.D., Hannapel, D.J., Mingery, G.A. and Pikaard, C.S. (1985) Molecular approaches to the study of the major tuber proteins. in Potato Physiology (Li, P.H., ed.). New York: Academic Press, pp. 261-278.
18. Peterson, R.L., Barker, W.G. and Howarth, M.J. (1985) Development and structure of tubers. In Potato Physiology (Li, P.H., ed.), New York: Academic Press, pp. 123-152.
19. Pinskey, A., Grossman, S. and Trop, M. (1971) Lipoxygenase content and antioxidant activity of some fruits and vegetables. J. Food Sci. 36, 571-572.
20. Preiss, J. (1991) Biology and molecular biology of starch synthesis and regulation. In Oxford Surveys of Plant Molecular and Cellular Biology, Volume 7 (Miflin, B.J., ed.). Oxford: Oxford University Press, pp. 59-114.
21. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
22. Saravitz, D.M. and Siedow, J.N. (1995) The lipoxygenase isozymes in soybean [Glycine max (L.) Merr.] leaves. Changes during leaf development, after wounding, and following reproductive sink removal. Plant Physiol. 107, 535-543.
23. Siedow, J.N. (1991) Plant lipoxygenase: structure and function. Ann. Rev. Plant Mol. Biol. 42, 145-188.
24. Stiekema, W.J., Heidekamp, F., Dirkse, W.G., van Beckum, J., Haan, P., ten Bosch, C. and Louwerse, J.D. (1988) Molecular cloning and analysis of four potato tuber mRNAs. Plant Mol. Biol. 11, 255-269.
25. Vick, B.A. and Zimmermann, D.C. (1987) Oxidative system for modification of fatty acids: the lipoxygenase pathway. In Biochemistry of Plants, Volume 9 (Strumpf, K.P. and Conn, E.E. eds). New York: Academic Press, pp. 53-90.
26. Visser, R.G.F., Vreugdenhil, D., Hendriks, T. and Jacobsen, E. (1994) Gene expression and carbohydrate content during stolon to tuber transition in potatoes (Solanum tuberosum). Physiol. Planta. 90, 285-292.
27. Vos, P., Hogers, R., Bleeker, M., Reijans, M., van de Lee, T., Homes, M., Frijters, A., Pot, J., Peleman, J., Kuiper, M. and Zabeau, M. (1995) AFLP: A new concept for DNA Fingerprinting. Nucl. Acids Res. 23, 4407-4414.
28. Welsh, J., Chada, K., Dalal, S.S., Cheng, R., Ralph, D. and McClelland, M. (1992) Arbitrarily primed PCR fingerprinting of RNA. Nucl. Acids Res. 20, 4965-4970.