-
1
-
-
64049089430
-
Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-Poisson distribution of transmitted variants
-
Abrahams, M. R., et al. 2009. Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-Poisson distribution of transmitted variants. J. Virol. 83, 3556-3567.
-
(2009)
J. Virol.
, vol.83
, pp. 3556-3567
-
-
Abrahams, M.R.1
-
2
-
-
34250679750
-
Epidemiology of hepatitis C virus infection
-
Alter, M. 2007. Epidemiology of hepatitis C virus infection. World J. Gastroenterol. 13, 2436-2441.
-
(2007)
World J. Gastroenterol.
, vol.13
, pp. 2436-2441
-
-
Alter, M.1
-
3
-
-
0027068086
-
The natural history of community-acquired hepatitis C in the United States. The Sentinel Counties Chronic non-A, non-B Hepatitis Study Team
-
Alter, M. J., et al. 1992. The natural history of community-acquired hepatitis C in the United States. The Sentinel Counties Chronic non-A, non-B Hepatitis Study Team. N. Engl. J. Med. 327, 1899-1905.
-
(1992)
N. Engl. J. Med.
, vol.327
, pp. 1899-1905
-
-
Alter, M.J.1
-
4
-
-
0032900678
-
Median-joining networks for inferring intraspecific phylogenies
-
Bandelt, H., P. Forster, and A. Rohl. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16, 37-48.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 37-48
-
-
Bandelt, H.1
Forster, P.2
Rohl, A.3
-
5
-
-
0026322339
-
Lack of polymorphism on the Drosophila fourth chromosome resulting from selection
-
Berry, A., J. Ajioka, and M. Kreitman. 1991. Lack of polymorphism on the Drosophila fourth chromosome resulting from selection. Genetics 129, 1111- 1117.
-
(1991)
Genetics
, vol.129
, pp. 1111-1117
-
-
Berry, A.1
Ajioka, J.2
Kreitman, M.3
-
7
-
-
0031982502
-
Comparison of the rate of sequence variation in the hypervariable region of E2/Ns1 region of hepatitis C virus in normal and hypogammaglobulinemic patients
-
Booth, J., U. Kumar, D. Webster, J. Monjardino, and H. C. Thomas. 1998. Comparison of the rate of sequence variation in the hypervariable region of E2/Ns1 region of hepatitis C virus in normal and hypogammaglobulinemic patients. Hepatology 27, 27223-27227.
-
(1998)
Hepatology
, vol.27
, pp. 27223-27227
-
-
Booth, J.1
Kumar, U.2
Webster, D.3
Monjardino, J.4
Thomas, H.C.5
-
8
-
-
47749126993
-
Coordinated evolution of the hepatitis C virus
-
Campo, D., Z. Dimitrova, R. Mitchell, J. Lara, and Y. Khudyakov. 2008. Coordinated evolution of the hepatitis C virus. Proc. Natl. Acad. Sci. U. S. A. 105, 9685-9690.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 9685-9690
-
-
Campo, D.1
Dimitrova, Z.2
Mitchell, R.3
Lara, J.4
Khudyakov, Y.5
-
9
-
-
0028863202
-
The pattern of neutral molecular variation under the background selection model
-
Charlesworth, D., B. Charlesworth, and M. Morgan. 1995. The pattern of neutral molecular variation under the background selection model. Genetics 141, 1619-1632.
-
(1995)
Genetics
, vol.141
, pp. 1619-1632
-
-
Charlesworth, D.1
Charlesworth, B.2
Morgan, M.3
-
10
-
-
21344442371
-
Comprehensive analyses of CD8+ T cell responses during longitudinal study of acute human hepatitis C
-
Cox, A., et al. 2005. Comprehensive analyses of CD8+ T cell responses during longitudinal study of acute human hepatitis C. Hepatology 42, 104- 112.
-
(2005)
Hepatology
, vol.42
, pp. 104-112
-
-
Cox, A.1
-
11
-
-
0001147595
-
Epidemiologic and immunologic significance of age distribution of antibody to antigenic variants of influenza virus
-
Davenport, F., A. Hennesy, and T. Francis. 1953. Epidemiologic and immunologic significance of age distribution of antibody to antigenic variants of influenza virus. J. Exp. Med. 98, 641-656.
-
(1953)
J. Exp. Med.
, vol.98
, pp. 641-656
-
-
Davenport, F.1
Hennesy, A.2
Francis, T.3
-
12
-
-
0036402567
-
Comparative rates of nucleotide sequence variation in the hypervariable region of E1/E2 and the NS5b region of hepatitis C virus in patients with a spectrum of liver disease resulting from a common source of infection
-
Duffy, M., et al. 2002. Comparative rates of nucleotide sequence variation in the hypervariable region of E1/E2 and the NS5b region of hepatitis C virus in patients with a spectrum of liver disease resulting from a common source of infection. Virology 301, 354-364.
-
(2002)
Virology
, vol.301
, pp. 354-364
-
-
Duffy, M.1
-
13
-
-
85007110786
-
Arlequin (version 3.0), an integrated software package for population genetics data analysis
-
Excoffier, L., G. Laval, and S. Schneider. 2005. Arlequin (version 3.0), an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1, 47-50.
-
(2005)
Evol. Bioinform. Online
, vol.1
, pp. 47-50
-
-
Excoffier, L.1
Laval, G.2
Schneider, S.3
-
14
-
-
0019797407
-
Evolutionary trees from DNA sequences, a maximum likelihood approach
-
Felsenstein, J. 1981. Evolutionary trees from DNA sequences, a maximum likelihood approach. J. Mol. Evol. 17, 368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
15
-
-
78449305271
-
Hepatitis C virus quasispecies in chronically infected children subjected to interferon-ribavirin therapy
-
Figlerowicz, M., et al. 2010. Hepatitis C virus quasispecies in chronically infected children subjected to interferon-ribavirin therapy. Arch. Virol. 155, 1977-1987.
-
(2010)
Arch. Virol.
, vol.155
, pp. 1977-1987
-
-
Figlerowicz, M.1
-
16
-
-
33748029489
-
Defective virus drives human immunodeficiency virus infection, persistence, and pathogenesis
-
Finzi, D., S. Plaeger, and C. Dieffenbach. 2006. Defective virus drives human immunodeficiency virus infection, persistence, and pathogenesis. Clin. Vaccine Immunol. 13, 715-721.
-
(2006)
Clin. Vaccine Immunol.
, vol.13
, pp. 715-721
-
-
Finzi, D.1
Plaeger, S.2
Dieffenbach, C.3
-
17
-
-
0038575483
-
Acute hepatitis C, high rate of both spontaneous and treatment-induced viral clearance
-
Gerlach, J. T., et al. 2003. Acute hepatitis C, high rate of both spontaneous and treatment-induced viral clearance. Gastroenterology 125, 80-88.
-
(2003)
Gastroenterology
, vol.125
, pp. 80-88
-
-
Gerlach, J.T.1
-
18
-
-
0037062448
-
Community structure in social and biological networks
-
Girvan, M., and M. Newman. 2002. Community structure in social and biological networks. Proc. Natl. Acad. Sci. U. S. A. 99, 7821-7826.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 7821-7826
-
-
Girvan, M.1
Newman, M.2
-
19
-
-
18344385692
-
Treatment of hepatitis C
-
Heathcote, J., and J. Main. 2005. Treatment of hepatitis C. J. Viral Hepat. 12, 223-235.
-
(2005)
J. Viral Hepat.
, vol.12
, pp. 223-235
-
-
Heathcote, J.1
Main, J.2
-
20
-
-
0035892032
-
Treatment of acute hepatitis C with interferon alfa-2b
-
Jaeckel, E., et al. 2001. Treatment of acute hepatitis C with interferon alfa-2b. N. Engl. J. Med. 345, 1452-1457.
-
(2001)
N. Engl. J. Med.
, vol.345
, pp. 1452-1457
-
-
Jaeckel, E.1
-
21
-
-
62749173126
-
Human immunodeficiency virus type 1 population genetics and adaptation in newly infected individuals
-
Kearney, M., et al. 2009. Human immunodeficiency virus type 1 population genetics and adaptation in newly infected individuals. J. Virol. 83, 2715-2727.
-
(2009)
J. Virol.
, vol.83
, pp. 2715-2727
-
-
Kearney, M.1
-
22
-
-
44649102135
-
Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
-
Keele, B. F., et al. 2008. Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc. Natl. Acad. Sci. U. S. A. 105, 7552-7557.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 7552-7557
-
-
Keele, B.F.1
-
23
-
-
0032581491
-
Original antigenic sin impairs cytotoxic T lymphocyte responses to viruses bearing variant epitopes
-
Klenerman, P., and R. Zinkernagel. 1998. Original antigenic sin impairs cytotoxic T lymphocyte responses to viruses bearing variant epitopes. Nature 394, 482-485.
-
(1998)
Nature
, vol.394
, pp. 482-485
-
-
Klenerman, P.1
Zinkernagel, R.2
-
24
-
-
17744396121
-
Not so different after all, a comparison of methods for detecting amino acid sites under selection
-
Kosakovsky Pond, S. L., and S. D. Frost. 2005. Not so different after all, a comparison of methods for detecting amino acid sites under selection. Mol. Biol. Evol. 22, 1208-1222.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1208-1222
-
-
Kosakovsky Pond, S.L.1
Frost, S.D.2
-
25
-
-
15844406550
-
HyPhy, hypothesis testing using phylogenies
-
Kosakovsky Pond, S. L., S. D. W. Frost, and S. V. Muse. 2005. HyPhy, hypothesis testing using phylogenies. Bioinformatics 21, 676-679.
-
(2005)
Bioinformatics
, vol.21
, pp. 676-679
-
-
Kosakovsky Pond, S.L.1
Frost, S.D.W.2
Muse, S.V.3
-
26
-
-
0027397555
-
Sequence variation in the large envelope glycoprotein (E2/NS1) of hepatitis C virus during chronic infection
-
Kumar, U., J. Brown, J. Monjardino, and H. Thomas. 1993. Sequence variation in the large envelope glycoprotein (E2/NS1) of hepatitis C virus during chronic infection. J. Infect. Dis. 167, 726-730.
-
(1993)
J. Infect. Dis.
, vol.167
, pp. 726-730
-
-
Kumar, U.1
Brown, J.2
Monjardino, J.3
Thomas, H.4
-
27
-
-
35748947247
-
Trends for genetic variation of hepatitis C virus quasispecies in human immunodeficiency virus 1-coinfected patients
-
López-Labrador, F., et al. 2007. Trends for genetic variation of hepatitis C virus quasispecies in human immunodeficiency virus 1-coinfected patients. Virus Res. 130, 285-291.
-
(2007)
Virus Res
, vol.130
, pp. 285-291
-
-
López-Labrador, F.1
-
28
-
-
4544336360
-
Hepatitis C virus NS5A, tales of a promiscuous protein
-
Macdonald, A., and M. Harris. 2004. Hepatitis C virus NS5A, tales of a promiscuous protein. J. Gen. Virol. 85, 2485-2502.
-
(2004)
J. Gen. Virol.
, vol.85
, pp. 2485-2502
-
-
Macdonald, A.1
Harris, M.2
-
29
-
-
39749175035
-
Antibody-dependent enhancement of hepatitis C virus infection
-
Meyer, K., M. Ait-Goughoulte, Z. Keck, S. Foung, and R. Ray. 2008. Antibody-dependent enhancement of hepatitis C virus infection. J. Virol. 82, 2140-2149.
-
(2008)
J. Virol.
, vol.82
, pp. 2140-2149
-
-
Meyer, K.1
Ait-Goughoulte, M.2
Keck, Z.3
Foung, S.4
Ray, R.5
-
30
-
-
63149142646
-
B cells in HIV infection and disease
-
Moir, S., and A. Fauci. 2009. B cells in HIV infection and disease. Nat. Rev. Immunol. 9, 235-245.
-
(2009)
Nat. Rev. Immunol.
, vol.9
, pp. 235-245
-
-
Moir, S.1
Fauci, A.2
-
31
-
-
77951586581
-
Using data-display networks for exploratory data analysis in phylogenetic studies
-
Morrison, D. A. 2010. Using data-display networks for exploratory data analysis in phylogenetic studies. Mol. Biol. Evol. 27, 1044-1057.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 1044-1057
-
-
Morrison, D.A.1
-
32
-
-
0005814023
-
Mathematical model for studying genetic variation in terms of restriction endonucleases
-
Nei, M., and W. Li. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U. S. A. 76, 5269-5273.
-
(1979)
Proc. Natl. Acad. Sci. U. S. A.
, vol.76
, pp. 5269-5273
-
-
Nei, M.1
Li, W.2
-
33
-
-
34347336641
-
Absence of viral escape within a frequently recognized HLA-A26-restricted CD8+ T-cell epitope targeting the functionally constrained hepatitis C virus NS5A/5B cleavage site
-
Neumann-Haefelin, C., et al. 2007. Absence of viral escape within a frequently recognized HLA-A26-restricted CD8+ T-cell epitope targeting the functionally constrained hepatitis C virus NS5A/5B cleavage site. J. Gen. Virol. 88, 1986-1991.
-
(2007)
J. Gen. Virol.
, vol.88
, pp. 1986-1991
-
-
Neumann-Haefelin, C.1
-
34
-
-
0042354654
-
Estimating the distribution of selection coefficients from phylogenetic data with applications to mitochondrial and viral DNA
-
Nielsen, R., and Z. Yang. 2003. Estimating the distribution of selection coefficients from phylogenetic data with applications to mitochondrial and viral DNA. Mol. Biol. Evol. 20, 1231-1239.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1231-1239
-
-
Nielsen, R.1
Yang, Z.2
-
35
-
-
1442281992
-
Structural biology of hepatitis C virus
-
Penin, F., J. Dubuisson, F. Rey, D. Moradpour, and J. Pawlotsky. 2004. Structural biology of hepatitis C virus. Hepatology 39, 5-19.
-
(2004)
Hepatology
, vol.39
, pp. 5-19
-
-
Penin, F.1
Dubuisson, J.2
Rey, F.3
Moradpour, D.4
Pawlotsky, J.5
-
36
-
-
0031773680
-
Modeltest, testing the model of DNA substitution
-
Posada, D., and K. Crandall. 1998. Modeltest, testing the model of DNA substitution. Bioinformatics 14, 817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.2
-
37
-
-
0035139147
-
Intraspecific gene genealogies, trees grafting into networks
-
Posada, D., and K. A. Crandall. 2001. Intraspecific gene genealogies, trees grafting into networks. Trends Ecol. Evol. 16, 37-45.
-
(2001)
Trends Ecol. Evol.
, vol.16
, pp. 37-45
-
-
Posada, D.1
Crandall, K.A.2
-
38
-
-
0029133773
-
Occupational hepatitis C virus infection in Italian health care workers Italian Study Group on Occupational Risk of Bloodborne Infections
-
Puro, V., et al. 1995. Occupational hepatitis C virus infection in Italian health care workers. Italian Study Group on Occupational Risk of Bloodborne Infections. Am. J. Public Health 85, 1272-1275.
-
(1995)
Am. J. Public Health
, vol.85
, pp. 1272-1275
-
-
Puro, V.1
-
39
-
-
11244345995
-
HCV quasispecies evolution, association with progression to end-stage liver disease in hemophiliacs infected with HCV or HCV/ HIV
-
Qin, H., et al. 2005. HCV quasispecies evolution, association with progression to end-stage liver disease in hemophiliacs infected with HCV or HCV/ HIV. Blood 105, 533-541.
-
(2005)
Blood
, vol.105
, pp. 533-541
-
-
Qin, H.1
-
40
-
-
29744468807
-
Effect of bottlenecking on evolution of the nonstructural protein 3 gene of hepatitis C virus during sexually transmitted acute resolving infection
-
Quer, J., et al. 2005. Effect of bottlenecking on evolution of the nonstructural protein 3 gene of hepatitis C virus during sexually transmitted acute resolving infection. J. Virol. 79, 15131-15141.
-
(2005)
J. Virol.
, vol.79
, pp. 15131-15141
-
-
Quer, J.1
-
41
-
-
46749091188
-
End point limiting dilution real time PCR assay for evaluation of HCV quasispecies in serum
-
Ramachandran, S., et al. 2008. End point limiting dilution real time PCR assay for evaluation of HCV quasispecies in serum. J. Virol. Methods 151, 217-224.
-
(2008)
J. Virol. Methods
, vol.151
, pp. 217-224
-
-
Ramachandran, S.1
-
42
-
-
58849101445
-
Virology and pathogenesis of hepatitis C virus recurrence
-
Ramírez, S., S. Pérez-Del-Pulgar, and X. Forns. 2008. Virology and pathogenesis of hepatitis C virus recurrence. Liver Transpl. 14, S27-S35.
-
(2008)
Liver Transpl
, vol.14
-
-
Ramírez, S.1
Pérez-Del-Pulgar, S.2
Forns, X.3
-
43
-
-
15444374647
-
Private aspects of heterologous immunity
-
Rehermann, B., and E. Shin. 2005. Private aspects of heterologous immunity. J. Exp. Med. 201, 667-670.
-
(2005)
J. Exp. Med.
, vol.201
, pp. 667-670
-
-
Rehermann, B.1
Shin, E.2
-
44
-
-
29444444292
-
Activation of naïve B lymphocytes via CD81, a pathogenetic mechanism for hepatitis C virus-associated B lymphocyte disorders
-
Rosa, D., et al. 2005. Activation of naïve B lymphocytes via CD81, a pathogenetic mechanism for hepatitis C virus-associated B lymphocyte disorders. Proc. Natl. Acad. Sci. U. S. A. 102, 18544-18549.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 18544-18549
-
-
Rosa, D.1
-
45
-
-
0037041373
-
Risk of hepatitis C virus transmission from an infected gynecologist to patients, results of a 7-year retrospective investigation
-
Ross, R. S., et al. 2002. Risk of hepatitis C virus transmission from an infected gynecologist to patients, results of a 7-year retrospective investigation. Arch. Intern. Med. 162, 805-810.
-
(2002)
Arch. Intern. Med.
, vol.162
, pp. 805-810
-
-
Ross, R.S.1
-
46
-
-
0023375195
-
The neighbor-joining method, a new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor-joining method, a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
47
-
-
84870415624
-
-
Reference deleted
-
Reference deleted
-
-
-
-
48
-
-
34848852702
-
CD4+ T cell responses in hepatitis C virus infection
-
Semmo, N., and P. Klenerman. 2007. CD4+ T cell responses in hepatitis C virus infection. World J. Gastroenterol. 13, 4831-4838.
-
(2007)
World J. Gastroenterol.
, vol.13
, pp. 4831-4838
-
-
Semmo, N.1
Klenerman, P.2
-
49
-
-
0032710838
-
Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection
-
Shankarappa, R., et al. 1999. Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection. J. Virol. 73, 10489-10502.
-
(1999)
J. Virol.
, vol.73
, pp. 10489-10502
-
-
Shankarappa, R.1
-
50
-
-
0030587469
-
A hyperimmune serum against a synthetic peptide corresponding to the hypervariable region 1 of hepatitis C virus can prevent viral infection in cell cultures
-
Shimizu, Y., et al. 1996. A hyperimmune serum against a synthetic peptide corresponding to the hypervariable region 1 of hepatitis C virus can prevent viral infection in cell cultures. Virology 223, 409-412.
-
(1996)
Virology
, vol.223
, pp. 409-412
-
-
Shimizu, Y.1
-
51
-
-
34447248989
-
Hepatitis C virus dynamics during natural infection are associated with long-term histological outcome of chronic hepatitis C disease
-
Sullivan, D. G., et al. 2007. Hepatitis C virus dynamics during natural infection are associated with long-term histological outcome of chronic hepatitis C disease. J. Infect. Dis. 196, 239-248.
-
(2007)
J. Infect. Dis.
, vol.196
, pp. 239-248
-
-
Sullivan, D.G.1
-
52
-
-
42549123677
-
The reality and importance of founder speciation in evolution
-
Templeton, A. 2008. The reality and importance of founder speciation in evolution. Bioessays 30, 470-479.
-
(2008)
Bioessays
, vol.30
, pp. 470-479
-
-
Templeton, A.1
-
53
-
-
0033119814
-
Prisoner's dilemma in an RNA virus
-
Turner, P., and L. Chao. 1999. Prisoner's dilemma in an RNA virus. Nature 398, 441-443.
-
(1999)
Nature
, vol.398
, pp. 441-443
-
-
Turner, P.1
Chao, L.2
-
54
-
-
33847015308
-
Hepatitis C virus continuously escapes from neutralizing antibody and T-cell responses during chronic infection in vivo
-
von Hahn, T., et al. 2007. Hepatitis C virus continuously escapes from neutralizing antibody and T-cell responses during chronic infection in vivo. Gastroenterology 132, 667-678.
-
(2007)
Gastroenterology
, vol.132
, pp. 667-678
-
-
von Hahn, T.1
-
55
-
-
58749109022
-
Hepatitis C virus immune escape via exploitation of a hole in the T cell repertoire
-
Wölfl, M., et al. 2008. Hepatitis C virus immune escape via exploitation of a hole in the T cell repertoire. J. Immunol. 181, 6435-6446.
-
(2008)
J. Immunol.
, vol.181
, pp. 6435-6446
-
-
Wölfl, M.1
-
56
-
-
34347253229
-
Hepatitis C virus epitope-specific neutralizing antibodies in Igs prepared from human plasma
-
Zhang, P., et al. 2007. Hepatitis C virus epitope-specific neutralizing antibodies in Igs prepared from human plasma. Proc. Natl. Acad. Sci. U. S. A. 104, 8449-8454.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 8449-8454
-
-
Zhang, P.1
-
57
-
-
33750740163
-
Persistent hepatitis C virus infection in vitro, coevolution of virus and host
-
Zhong, J., et al. 2006. Persistent hepatitis C virus infection in vitro, coevolution of virus and host. J. Virol. 80, 11082-11093.
-
(2006)
J. Virol.
, vol.80
, pp. 11082-11093
-
-
Zhong, J.1
|