메뉴 건너뛰기




Volumn 8, Issue 1, 2014, Pages 36-

Molecular Evolution of Zika Virus during Its Emergence in the 20th Century

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS ENVELOPE PROTEIN;

EID: 84893713454     PISSN: 19352727     EISSN: 19352735     Source Type: Journal    
DOI: 10.1371/journal.pntd.0002636     Document Type: Article
Times cited : (628)

References (75)
  • 1
    • 70249130933 scopus 로고    scopus 로고
    • Zika virus outside Africa
    • doi: 10.3201/eid1509.090442
    • Hayes EB, (2009) Zika virus outside Africa. Emerg Infect Dis 15: 1347-1350 doi:10.3201/eid1509.090442.
    • (2009) Emerg Infect Dis , vol.15 , pp. 1347-1350
    • Hayes, E.B.1
  • 2
    • 33745651162 scopus 로고
    • Zika virus infection in man
    • Simpson DI, (1964) Zika virus infection in man. Trans R Soc Trop Med Hyg 58: 335-338.
    • (1964) Trans R Soc Trop Med Hyg , vol.58 , pp. 335-338
    • Simpson, D.I.1
  • 3
    • 84961015764 scopus 로고
    • Zika virus infection experimentally induced in a human volunteer
    • Bearcroft WG, (1956) Zika virus infection experimentally induced in a human volunteer. Trans R Soc Trop Med Hyg 50: 442-448.
    • (1956) Trans R Soc Trop Med Hyg , vol.50 , pp. 442-448
    • Bearcroft, W.G.1
  • 6
    • 0018616782 scopus 로고
    • Zika virus infections in Nigeria: virological and seroepidemiological investigations in Oyo State
    • Fagbami AH, (1979) Zika virus infections in Nigeria: virological and seroepidemiological investigations in Oyo State. J Hyg (Lond) 83: 213-219.
    • (1979) J Hyg (Lond) , vol.83 , pp. 213-219
    • Fagbami, A.H.1
  • 7
    • 0016790808 scopus 로고
    • Serological and entomological study on yellow fever in Sierra Leone
    • Robin Y, Mouchet J, (1978) Serological and entomological study on yellow fever in Sierra Leone. Bull Soc Pathol Exot Filiales 68: 249-258.
    • (1978) Bull Soc Pathol Exot Filiales , vol.68 , pp. 249-258
    • Robin, Y.1    Mouchet, J.2
  • 9
    • 0020394271 scopus 로고
    • Yellow fever and Zika virus epizootics and enzootics in Uganda
    • McCrae AW, Kirya BG, (1982) Yellow fever and Zika virus epizootics and enzootics in Uganda. Trans R Soc Trop Med Hyg 76: 552-562.
    • (1982) Trans R Soc Trop Med Hyg , vol.76 , pp. 552-562
    • McCrae, A.W.1    Kirya, B.G.2
  • 10
    • 0019769224 scopus 로고
    • Serological survey for the prevalence of certain arboviruses in the human population of the south-east area of Central African Republic
    • Saluzzo JF, Gonzalez JP, Hervé JP, Georges AJ, (1981) Serological survey for the prevalence of certain arboviruses in the human population of the south-east area of Central African Republic. Bull Soc Pathol Exot Filiales 74: 490-499.
    • (1981) Bull Soc Pathol Exot Filiales , vol.74 , pp. 490-499
    • Saluzzo, J.F.1    Gonzalez, J.P.2    Hervé, J.P.3    Georges, A.J.4
  • 11
    • 0027350122 scopus 로고
    • Surveillance of the circulation of arbovirus of medical interest in the region of eastern Senegal
    • Monlun E, Zeller H, Le Guenno B, Traoré-Lamizana M, Hervy JP, et al. (1993) Surveillance of the circulation of arbovirus of medical interest in the region of eastern Senegal. Bull Soc Pathol Exot 86: 21-28.
    • (1993) Bull Soc Pathol Exot , vol.86 , pp. 21-28
    • Monlun, E.1    Zeller, H.2    Le Guenno, B.3    Traoré-Lamizana, M.4    Hervy, J.P.5
  • 14
    • 0014508499 scopus 로고
    • Isolation of Zika virus from Aedes aegypti mosquitoes in Malaysia
    • Marchette NJ, Garcia R, Rudnick A, (1969) Isolation of Zika virus from Aedes aegypti mosquitoes in Malaysia. Am J Trop Med Hyg 18: 411-415.
    • (1969) Am J Trop Med Hyg , vol.18 , pp. 411-415
    • Marchette, N.J.1    Garcia, R.2    Rudnick, A.3
  • 16
    • 67149088928 scopus 로고    scopus 로고
    • Zika virus outbreak on Yap Island, Federated States of Micronesia
    • doi: 10.1056/NEJMoa0805715
    • Duffy MR, Chen T-H, Hancock WT, Powers AM, Kool JL, et al. (2009) Zika virus outbreak on Yap Island, Federated States of Micronesia. N Engl J Med 360: 2536-2543 doi:10.1056/NEJMoa0805715.
    • (2009) N Engl J Med , vol.360 , pp. 2536-2543
    • Duffy, M.R.1    Chen, T.-H.2    Hancock, W.T.3    Powers, A.M.4    Kool, J.L.5
  • 17
    • 48749093929 scopus 로고    scopus 로고
    • Genetic and serologic properties of Zika virus associated with an epidemic, Yap State, Micronesia, 2007
    • Lanciotti RS, Kosoy OL, Laven JJ, Velez JO, Lambert AJ, et al. (2008) Genetic and serologic properties of Zika virus associated with an epidemic, Yap State, Micronesia, 2007. Emerg Infect Dis 14: 1232-1239.
    • (2008) Emerg Infect Dis , vol.14 , pp. 1232-1239
    • Lanciotti, R.S.1    Kosoy, O.L.2    Laven, J.J.3    Velez, J.O.4    Lambert, A.J.5
  • 19
    • 0025116324 scopus 로고
    • Flavivirus genome organization, expression, and replication
    • doi: 10.1146/annurev.mi.44.100190.003245
    • Chambers TJ, Hahn CS, Galler R, Rice CM, (1990) Flavivirus genome organization, expression, and replication. Annu Rev Microbiol 44: 649-688 doi:10.1146/annurev.mi.44.100190.003245.
    • (1990) Annu Rev Microbiol , vol.44 , pp. 649-688
    • Chambers, T.J.1    Hahn, C.S.2    Galler, R.3    Rice, C.M.4
  • 20
    • 33947379655 scopus 로고    scopus 로고
    • Full-length sequencing and genomic characterization of Bagaza, Kedougou, and Zika viruses
    • doi: 10.1007/s00705-006-0903-z
    • Kuno G, Chang G-JJ, (2007) Full-length sequencing and genomic characterization of Bagaza, Kedougou, and Zika viruses. Arch Virol 152: 687-696 doi:10.1007/s00705-006-0903-z.
    • (2007) Arch Virol , vol.152 , pp. 687-696
    • Kuno, G.1    Chang, G.-J.J.2
  • 21
    • 1542676405 scopus 로고    scopus 로고
    • Molecular biology of flaviviruses
    • Lindenbach BD, Rice CM, (2003) Molecular biology of flaviviruses. Adv Virus Res 59: 23-61.
    • (2003) Adv Virus Res , vol.59 , pp. 23-61
    • Lindenbach, B.D.1    Rice, C.M.2
  • 23
    • 1542571418 scopus 로고    scopus 로고
    • Origins, evolution, and vector/host coadaptations within the genus Flavivirus
    • Gould EA, de Lamballerie X, Zanotto PM, Holmes EC, (2003) Origins, evolution, and vector/host coadaptations within the genus Flavivirus. Adv Virus Res 59: 277-314.
    • (2003) Adv Virus Res , vol.59 , pp. 277-314
    • Gould, E.A.1    de Lamballerie, X.2    Zanotto, P.M.3    Holmes, E.C.4
  • 24
    • 0034898671 scopus 로고    scopus 로고
    • Phylogenetic relationships of flaviviruses correlate with their epidemiology, disease association and biogeography
    • Gaunt MW, Sall AA, de Lamballerie X, Falconar AK, Dzhivanian TI, et al. (2001) Phylogenetic relationships of flaviviruses correlate with their epidemiology, disease association and biogeography. J Gen Virol 82: 1867-1876.
    • (2001) J Gen Virol , vol.82 , pp. 1867-1876
    • Gaunt, M.W.1    Sall, A.A.2    de Lamballerie, X.3    Falconar, A.K.4    Dzhivanian, T.I.5
  • 26
    • 84857819894 scopus 로고    scopus 로고
    • Genetic Characterization of Zika Virus Strains: Geographic Expansion of the Asian Lineage
    • doi: 10.1371/journal.pntd.0001477
    • Haddow AD, Schuh AJ, Yasuda CY, Kasper MR, Heang V, et al. (2012) Genetic Characterization of Zika Virus Strains: Geographic Expansion of the Asian Lineage. PLoS Negl Trop Dis 6: e1477 doi:10.1371/journal.pntd.0001477.
    • (2012) PLoS Negl Trop Dis , vol.6
    • Haddow, A.D.1    Schuh, A.J.2    Yasuda, C.Y.3    Kasper, M.R.4    Heang, V.5
  • 28
    • 49749091652 scopus 로고    scopus 로고
    • One-step RT-PCR for detection of Zika virus
    • doi: 10.1016/j.jcv.2008.05.005
    • Faye O, Faye O, Dupressoir A, Weidmann M, Ndiaye M, et al. (2008) One-step RT-PCR for detection of Zika virus. J Clin Virol 43: 96-101 doi:10.1016/j.jcv.2008.05.005.
    • (2008) J Clin Virol , vol.43 , pp. 96-101
    • Faye, O.1    Faye, O.2    Dupressoir, A.3    Weidmann, M.4    Ndiaye, M.5
  • 29
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • doi: 10.1093/nar/gkh340
    • Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797 doi:10.1093/nar/gkh340.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 30
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • doi: 10.1093/molbev/msp259
    • Gouy M, Guindon S, Gascuel O, (2010) SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27: 221-224 doi:10.1093/molbev/msp259.
    • (2010) Mol Biol Evol , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 31
    • 77957243284 scopus 로고    scopus 로고
    • RDP3: a flexible and fast computer program for analyzing recombination
    • doi: 10.1093/bioinformatics/btq467
    • Martin DP, Lemey P, Lott M, Moulton V, Posada D, et al. (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26: 2462-2463 doi:10.1093/bioinformatics/btq467.
    • (2010) Bioinformatics , vol.26 , pp. 2462-2463
    • Martin, D.P.1    Lemey, P.2    Lott, M.3    Moulton, V.4    Posada, D.5
  • 32
    • 0033824415 scopus 로고    scopus 로고
    • RDP: detection of recombination amongst aligned sequences
    • Martin D, Rybicki E, (2000) RDP: detection of recombination amongst aligned sequences. Bioinformatics 16: 562-563.
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 33
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • doi: 10.1006/viro.1999.0056
    • Padidam M, Sawyer S, Fauquet CM, (1999) Possible emergence of new geminiviruses by frequent recombination. Virology 265: 218-225 doi:10.1006/viro.1999.0056.
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 34
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: computer simulations
    • doi: 10.1073/pnas.241370698
    • Posada D, Crandall KA, (2001) Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc Natl Acad Sci U S A 98: 13757-13762 doi:10.1073/pnas.241370698.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 35
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Smith JM, (1992) Analyzing the mosaic structure of genes. J Mol Evol 34: 126-129.
    • (1992) J Mol Evol , vol.34 , pp. 126-129
    • Smith, J.M.1
  • 36
    • 13144283628 scopus 로고    scopus 로고
    • A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
    • doi: 10.1089/aid.2005.21.98
    • Martin DP, Posada D, Crandall KA, Williamson C, (2005) A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res Hum Retroviruses 21: 98-102 doi:10.1089/aid.2005.21.98.
    • (2005) AIDS Res Hum Retroviruses , vol.21 , pp. 98-102
    • Martin, D.P.1    Posada, D.2    Crandall, K.A.3    Williamson, C.4
  • 37
    • 0033753825 scopus 로고    scopus 로고
    • Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences
    • Gibbs MJ, Armstrong JS, Gibbs AJ, (2000) Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16: 573-582.
    • (2000) Bioinformatics , vol.16 , pp. 573-582
    • Gibbs, M.J.1    Armstrong, J.S.2    Gibbs, A.J.3
  • 38
    • 34250757252 scopus 로고    scopus 로고
    • An Exact Nonparametric Method for Inferring Mosaic Structure in Sequence Triplets
    • doi: 10.1534/genetics.106.068874
    • Boni MF, Posada D, Feldman MW, (2006) An Exact Nonparametric Method for Inferring Mosaic Structure in Sequence Triplets. Genetics 176: 1035-1047 doi:10.1534/genetics.106.068874.
    • (2006) Genetics , vol.176 , pp. 1035-1047
    • Boni, M.F.1    Posada, D.2    Feldman, M.W.3
  • 39
    • 0028931857 scopus 로고
    • Multiple significance tests: the Bonferroni method
    • Bland JM, Altman DG, (1995) Multiple significance tests: the Bonferroni method. BMJ 310: 170.
    • (1995) BMJ , vol.310 , pp. 170
    • Bland, J.M.1    Altman, D.G.2
  • 40
    • 63549098393 scopus 로고    scopus 로고
    • Accurate detection of recombinant breakpoints in whole-genome alignments
    • doi: 10.1371/journal.pcbi.1000318
    • Westesson O, Holmes I, (2009) Accurate detection of recombinant breakpoints in whole-genome alignments. PLoS Comput Biol 5: e1000318 doi:10.1371/journal.pcbi.1000318.
    • (2009) PLoS Comput Biol , vol.5
    • Westesson, O.1    Holmes, I.2
  • 41
    • 79953677207 scopus 로고    scopus 로고
    • GiRaF: Robust, computational identification of influenza reassortments via graph mining
    • doi: 10.1093/nar/gkq1232
    • Nagarajan N, Kingsford C, (2011) GiRaF: Robust, computational identification of influenza reassortments via graph mining. Nucleic Acids Res 39: e34 doi:10.1093/nar/gkq1232.
    • (2011) Nucleic Acids Res , vol.39
    • Nagarajan, N.1    Kingsford, C.2
  • 42
    • 84860109324 scopus 로고    scopus 로고
    • MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
    • doi: 10.1093/sysbio/sys029
    • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, et al. (2012) MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space. Syst Biol 61: 539-42 doi:10.1093/sysbio/sys029.
    • (2012) Syst Biol , vol.61 , pp. 539-542
    • Ronquist, F.1    Teslenko, M.2    van der Mark, P.3    Ayres, D.L.4    Darling, A.5
  • 43
    • 0031002417 scopus 로고    scopus 로고
    • Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment
    • Strimmer K, von Haeseler A, (1997) Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment. Proc Natl Acad Sci U S A 94: 6815-6819.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 6815-6819
    • Strimmer, K.1    von Haeseler, A.2
  • 44
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
    • doi: 10.1093/bioinformatics/18.3.502
    • Schmidt H a, Strimmer K, Vingron M, von Haeseler A, (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18: 502-504 doi:10.1093/bioinformatics/18.3.502.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 45
    • 79952321812 scopus 로고    scopus 로고
    • The performance of the Congruence Among Distance Matrices (CADM) test in phylogenetic analysis
    • doi: 10.1186/1471-2148-11-64
    • Campbell V, Legendre P, Lapointe F-J, (2011) The performance of the Congruence Among Distance Matrices (CADM) test in phylogenetic analysis. BMC Evol Biol 11: 64 doi:10.1186/1471-2148-11-64.
    • (2011) BMC Evol Biol , vol.11 , pp. 64
    • Campbell, V.1    Legendre, P.2    Lapointe, F.-J.3
  • 47
    • 77954202497 scopus 로고    scopus 로고
    • DendroPy: a Python library for phylogenetic computing
    • doi: 10.1093/bioinformatics/btq228
    • Sukumaran J, Holder MT, (2010) DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571 doi:10.1093/bioinformatics/btq228.
    • (2010) Bioinformatics , vol.26 , pp. 1569-1571
    • Sukumaran, J.1    Holder, M.T.2
  • 48
    • 15844406550 scopus 로고    scopus 로고
    • HyPhy: hypothesis testing using phylogenies
    • doi: 10.1093/bioinformatics/bti079
    • Pond SLK, Frost SDW, Muse S V, (2005) HyPhy: hypothesis testing using phylogenies. Bioinformatics 21: 676-679 doi:10.1093/bioinformatics/bti079.
    • (2005) Bioinformatics , vol.21 , pp. 676-679
    • Pond, S.L.K.1    Frost, S.D.W.2    Muse, S.V.3
  • 49
    • 34547768286 scopus 로고    scopus 로고
    • NetCGlyc 1.0: prediction of mammalian C-mannosylation sites
    • doi: 10.1093/glycob/cwm050
    • Julenius K, (2007) NetCGlyc 1.0: prediction of mammalian C-mannosylation sites. Glycobiology 17: 868-876 doi:10.1093/glycob/cwm050.
    • (2007) Glycobiology , vol.17 , pp. 868-876
    • Julenius, K.1
  • 50
    • 13644257223 scopus 로고    scopus 로고
    • Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites
    • doi: 10.1093/glycob/cwh151
    • Julenius K, Mølgaard A, Gupta R, Brunak S, (2005) Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites. Glycobiology 15: 153-164 doi:10.1093/glycob/cwh151.
    • (2005) Glycobiology , vol.15 , pp. 153-164
    • Julenius, K.1    Mølgaard, A.2    Gupta, R.3    Brunak, S.4
  • 51
    • 0036370537 scopus 로고    scopus 로고
    • Prediction of glycosylation across the human proteome and the correlation to protein function
    • Gupta R, Brunak S, (2002) Prediction of glycosylation across the human proteome and the correlation to protein function. Pac Symp Biocomput pp. 310-322.
    • (2002) Pac Symp Biocomput , pp. 310-322
    • Gupta, R.1    Brunak, S.2
  • 52
    • 2942564430 scopus 로고    scopus 로고
    • Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence
    • doi: 10.1002/pmic.200300771
    • Blom N, Sicheritz-Pontén T, Gupta R, Gammeltoft S, Brunak S, (2004) Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence. Proteomics 4: 1633-1649 doi:10.1002/pmic.200300771.
    • (2004) Proteomics , vol.4 , pp. 1633-1649
    • Blom, N.1    Sicheritz-Pontén, T.2    Gupta, R.3    Gammeltoft, S.4    Brunak, S.5
  • 53
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • doi: 10.1006/jmbi.1993.1626
    • Sali A, Blundell TL, (1993) Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol 234: 779-815 doi:10.1006/jmbi.1993.1626.
    • (1993) J Mol Biol , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 54
    • 0000243829 scopus 로고
    • PROCHECK: a program to check the stereochemical quality of protein structures
    • doi: 10.1107/S0021889892009944
    • Laskowski RA, MacArthur MW, Moss DS, Thornton JM, (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Crystallogr 26: 283-291 doi:10.1107/S0021889892009944.
    • (1993) J Appl Crystallogr , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 55
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • doi: 10.1186/1471-2148-7-214
    • Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214 doi:10.1186/1471-2148-7-214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 56
    • 33344465800 scopus 로고    scopus 로고
    • Relaxed phylogenetics and dating with confidence
    • doi: 10.1371/journal.pbio.0040088
    • Drummond AJ, Ho SYW, Phillips MJ, Rambaut A, (2006) Relaxed phylogenetics and dating with confidence. PLoS Biol 4: e88 doi:10.1371/journal.pbio.0040088.
    • (2006) PLoS Biol , vol.4
    • Drummond, A.J.1    Ho, S.Y.W.2    Phillips, M.J.3    Rambaut, A.4
  • 57
    • 70349675664 scopus 로고    scopus 로고
    • Bayesian phylogeography finds its roots
    • doi: 10.1371/journal.pcbi.1000520
    • Lemey P, Rambaut A, Drummond AJ, Suchard MA, (2009) Bayesian phylogeography finds its roots. PLoS Comput Biol 5: e1000520 doi:10.1371/journal.pcbi.1000520.
    • (2009) PLoS Comput Biol , vol.5
    • Lemey, P.1    Rambaut, A.2    Drummond, A.J.3    Suchard, M.A.4
  • 58
    • 80053959139 scopus 로고    scopus 로고
    • SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics
    • doi: 10.1093/bioinformatics/btr481
    • Bielejec F, Rambaut A, Suchard MA, Lemey P, (2011) SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics. Bioinformatics 27: 2910-2912 doi:10.1093/bioinformatics/btr481.
    • (2011) Bioinformatics , vol.27 , pp. 2910-2912
    • Bielejec, F.1    Rambaut, A.2    Suchard, M.A.3    Lemey, P.4
  • 59
    • 42649136257 scopus 로고    scopus 로고
    • Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty
    • Parker J, Rambaut A, Pybus OG, (2008) Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty. Infect Genet Evol 8: 239-246.
    • (2008) Infect Genet Evol , vol.8 , pp. 239-246
    • Parker, J.1    Rambaut, A.2    Pybus, O.G.3
  • 60
    • 55449127787 scopus 로고    scopus 로고
    • Predicting functional gene links from phylogenetic-statistical analyses of whole genomes
    • doi: 10.1371/journal.pcbi.0010003
    • Barker D, Pagel M, (2005) Predicting functional gene links from phylogenetic-statistical analyses of whole genomes. PLoS Comput Biol 1: e3 doi:10.1371/journal.pcbi.0010003.
    • (2005) PLoS Comput Biol , vol.1
    • Barker, D.1    Pagel, M.2
  • 61
    • 0034983646 scopus 로고    scopus 로고
    • Bayesian Selection of Continuous-Time Markov Chain Evolutionary Models
    • doi: 10.1093/oxfordjournals.molbev.a003872
    • Suchard MA, Weiss RE, Sinsheimer JS, (2001) Bayesian Selection of Continuous-Time Markov Chain Evolutionary Models. Mol Biol Evol 18: 1001-1013 doi:10.1093/oxfordjournals.molbev.a003872.
    • (2001) Mol Biol Evol , vol.18 , pp. 1001-1013
    • Suchard, M.A.1    Weiss, R.E.2    Sinsheimer, J.S.3
  • 62
    • 0036183042 scopus 로고    scopus 로고
    • The effect of recombination on the accuracy of phylogeny estimation
    • doi: 10.1007/s00239-001-0034-9
    • Posada D, Crandall K a, (2002) The effect of recombination on the accuracy of phylogeny estimation. J Mol Evol 54: 396-402 doi:10.1007/s00239-001-0034-9.
    • (2002) J Mol Evol , vol.54 , pp. 396-402
    • Posada, D.1    Crandall, K.2
  • 63
    • 0033793521 scopus 로고    scopus 로고
    • Consequences of recombination on traditional phylogenetic analysis
    • Schierup MH, Hein J, (2000) Consequences of recombination on traditional phylogenetic analysis. Genetics 156: 879-891.
    • (2000) Genetics , vol.156 , pp. 879-891
    • Schierup, M.H.1    Hein, J.2
  • 64
    • 0042905752 scopus 로고    scopus 로고
    • Missing Data, Incomplete Taxa, and Phylogenetic Accuracy
    • doi: 10.1080/10635150390218330
    • Wiens JJ, (2003) Missing Data, Incomplete Taxa, and Phylogenetic Accuracy. Syst Biol 52: 528-538 doi:10.1080/10635150390218330.
    • (2003) Syst Biol , vol.52 , pp. 528-538
    • Wiens, J.J.1
  • 65
    • 31344471014 scopus 로고    scopus 로고
    • Missing data and the design of phylogenetic analyses
    • doi: 10.1016/j.jbi.2005.04.001
    • Wiens JJ, (2006) Missing data and the design of phylogenetic analyses. J Biomed Inform 39: 34-42 doi:10.1016/j.jbi.2005.04.001.
    • (2006) J Biomed Inform , vol.39 , pp. 34-42
    • Wiens, J.J.1
  • 66
    • 79960425867 scopus 로고    scopus 로고
    • Why do RNA viruses recombine?
    • doi: 10.1038/nrmicro2614
    • Simon-Loriere E, Holmes EC, (2011) Why do RNA viruses recombine? Nat Rev Microbiol 9: 617-626 doi:10.1038/nrmicro2614.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 617-626
    • Simon-Loriere, E.1    Holmes, E.C.2
  • 67
    • 2442658990 scopus 로고    scopus 로고
    • A large variation in the rates of synonymous substitution for RNA viruses and its relationship to a diversity of viral infection and transmission modes
    • doi: 10.1093/molbev/msh109
    • Hanada K, Suzuki Y, Gojobori T, (2004) A large variation in the rates of synonymous substitution for RNA viruses and its relationship to a diversity of viral infection and transmission modes. Mol Biol Evol 21: 1074-1080 doi:10.1093/molbev/msh109.
    • (2004) Mol Biol Evol , vol.21 , pp. 1074-1080
    • Hanada, K.1    Suzuki, Y.2    Gojobori, T.3
  • 68
    • 0141565071 scopus 로고    scopus 로고
    • Patterns of intra- and interhost nonsynonymous variation reveal strong purifying selection in dengue virus
    • Holmes EC, (2003) Patterns of intra- and interhost nonsynonymous variation reveal strong purifying selection in dengue virus. J Virol 77: 11296-11298.
    • (2003) J Virol , vol.77 , pp. 11296-11298
    • Holmes, E.C.1
  • 69
    • 0037229543 scopus 로고    scopus 로고
    • Inferring the Rate and Time-Scale of Dengue Virus Evolution
    • doi: 10.1093/molbev/msg010
    • Twiddy SS, Holmes EC, Rambaut a, (2003) Inferring the Rate and Time-Scale of Dengue Virus Evolution. Mol Biol Evol 20: 122-129 doi:10.1093/molbev/msg010.
    • (2003) Mol Biol Evol , vol.20 , pp. 122-129
    • Twiddy, S.S.1    Holmes, E.C.2    Rambaut, A.3
  • 70
    • 27144436486 scopus 로고    scopus 로고
    • Biological transmission of arboviruses: Reexamination of and new insights into components, mechanisms, and unique traits as well as their evolutionary trends
    • doi: 10.1128/CMR.18.4.608-637.2005
    • Kuno G, Chang G-JJ, (2005) Biological transmission of arboviruses: Reexamination of and new insights into components, mechanisms, and unique traits as well as their evolutionary trends. Clin Microbiol Rev 18: 608-637 doi:10.1128/CMR.18.4.608-637.2005.
    • (2005) Clin Microbiol Rev , vol.18 , pp. 608-637
    • Kuno, G.1    Chang, G.-J.J.2
  • 71
    • 0033011533 scopus 로고    scopus 로고
    • Vectors of Chikungunya virus in Senegal: current data and transmission cycles
    • Diallo M, Thonnon J, Traore-Lamizana M, Fontenille D, (1999) Vectors of Chikungunya virus in Senegal: current data and transmission cycles. Am J Trop Med Hyg 60: 281-286.
    • (1999) Am J Trop Med Hyg , vol.60 , pp. 281-286
    • Diallo, M.1    Thonnon, J.2    Traore-Lamizana, M.3    Fontenille, D.4
  • 72
    • 27144498110 scopus 로고    scopus 로고
    • N-linked glycosylation of west nile virus envelope proteins influences particle assembly and infectivity
    • doi: 10.1128/JVI.79.21.13262-13274.2005
    • Hanna SL, Pierson TC, Sanchez MD, Ahmed AA, Murtadha MM, et al. (2005) N-linked glycosylation of west nile virus envelope proteins influences particle assembly and infectivity. J Virol 79: 13262-13274 doi:10.1128/JVI.79.21.13262-13274.2005.
    • (2005) J Virol , vol.79 , pp. 13262-13274
    • Hanna, S.L.1    Pierson, T.C.2    Sanchez, M.D.3    Ahmed, A.A.4    Murtadha, M.M.5
  • 73
    • 77951429019 scopus 로고    scopus 로고
    • Both E protein glycans adversely affect dengue virus infectivity but are beneficial for virion release
    • doi: 10.1128/JVI.01900-09
    • Lee E, Leang SK, Davidson A, Lobigs M, (2010) Both E protein glycans adversely affect dengue virus infectivity but are beneficial for virion release. J Virol 84: 5171-5180 doi:10.1128/JVI.01900-09.
    • (2010) J Virol , vol.84 , pp. 5171-5180
    • Lee, E.1    Leang, S.K.2    Davidson, A.3    Lobigs, M.4
  • 74
    • 34250854515 scopus 로고    scopus 로고
    • Essential role of dengue virus envelope protein N glycosylation at asparagine-67 during viral propagation
    • doi: 10.1128/JVI.00116-07
    • Mondotte JA, Lozach P-Y, Amara A, Gamarnik A V, (2007) Essential role of dengue virus envelope protein N glycosylation at asparagine-67 during viral propagation. J Virol 81: 7136-7148 doi:10.1128/JVI.00116-07.
    • (2007) J Virol , vol.81 , pp. 7136-7148
    • Mondotte, J.A.1    Lozach, P.-Y.2    Amara, A.3    Gamarnik, A.V.4
  • 75
    • 0031714337 scopus 로고    scopus 로고
    • West Nile virus envelope proteins: nucleotide sequence analysis of strains differing in mouse neuroinvasiveness
    • Chambers TJ, Halevy M, Nestorowicz A, Rice CM, Lustig S, (1998) West Nile virus envelope proteins: nucleotide sequence analysis of strains differing in mouse neuroinvasiveness. J Gen Virol 79 (Pt 10) (): 2375-2380.
    • (1998) J Gen Virol , vol.79 , Issue.Pt 10 , pp. 2375-2380
    • Chambers, T.J.1    Halevy, M.2    Nestorowicz, A.3    Rice, C.M.4    Lustig, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.