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Volumn 56, Issue , 2019, Pages 61-68

Renaissance of traditional DNA transfer strategies for improvement of industrial lactic acid bacteria

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; GENE TRANSFER; GENES; YARN;

EID: 85054564976     PISSN: 09581669     EISSN: 18790429     Source Type: Journal    
DOI: 10.1016/j.copbio.2018.09.004     Document Type: Review
Times cited : (34)

References (74)
  • 1
    • 85019239657 scopus 로고    scopus 로고
    • Genomics of lactic acid bacteria: current status and potential applications
    • Wu, C., Huang, J., Zhou, R., Genomics of lactic acid bacteria: current status and potential applications. Crit Rev Microbiol 43 (2017), 393–404.
    • (2017) Crit Rev Microbiol , vol.43 , pp. 393-404
    • Wu, C.1    Huang, J.2    Zhou, R.3
  • 2
    • 84984985713 scopus 로고    scopus 로고
    • Advances in the genomics and metabolomics of dairy lactobacilli: a review
    • Stefanovic, E., Fitzgerald, G., McAuliffe, O., Advances in the genomics and metabolomics of dairy lactobacilli: a review. Food Microbiol 61 (2017), 33–49.
    • (2017) Food Microbiol , vol.61 , pp. 33-49
    • Stefanovic, E.1    Fitzgerald, G.2    McAuliffe, O.3
  • 3
  • 4
    • 84994453347 scopus 로고    scopus 로고
    • Natural competence for transformation
    • Blokesch, M., Natural competence for transformation. Curr Biol 26 (2016), R1126–R1130.
    • (2016) Curr Biol , vol.26 , pp. R1126-R1130
    • Blokesch, M.1
  • 5
    • 77749279743 scopus 로고    scopus 로고
    • A novel pheromone quorum-sensing system controls the development of natural competence in Streptococcus thermophilus and Streptococcus salivarius
    • Fontaine, L., Boutry, C., de Frahan, M.H., Delplace, B., Fremaux, C., Horvath, P., Boyaval, P., Hols, P., A novel pheromone quorum-sensing system controls the development of natural competence in Streptococcus thermophilus and Streptococcus salivarius. J Bacteriol 192 (2010), 1444–1454.
    • (2010) J Bacteriol , vol.192 , pp. 1444-1454
    • Fontaine, L.1    Boutry, C.2    de Frahan, M.H.3    Delplace, B.4    Fremaux, C.5    Horvath, P.6    Boyaval, P.7    Hols, P.8
  • 6
    • 33750052593 scopus 로고    scopus 로고
    • Natural genetic transformation: a novel tool for efficient genetic engineering of the dairy bacterium Streptococcus thermophilus
    • Blomqvist, T., Steinmoen, H., Havarstein, L.S., Natural genetic transformation: a novel tool for efficient genetic engineering of the dairy bacterium Streptococcus thermophilus. Appl Environ Microbiol 72 (2006), 6751–6756.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 6751-6756
    • Blomqvist, T.1    Steinmoen, H.2    Havarstein, L.S.3
  • 7
    • 67650293862 scopus 로고    scopus 로고
    • The oligopeptide transport system is essential for the development of natural competence in Streptococcus thermophilus strain LMD-9
    • Gardan, R., Besset, C., Guillot, A., Gitton, C., Monnet, V., The oligopeptide transport system is essential for the development of natural competence in Streptococcus thermophilus strain LMD-9. J Bacteriol 191 (2009), 4647–4655.
    • (2009) J Bacteriol , vol.191 , pp. 4647-4655
    • Gardan, R.1    Besset, C.2    Guillot, A.3    Gitton, C.4    Monnet, V.5
  • 8
    • 80052217785 scopus 로고    scopus 로고
    • The fast milk acidifying phenotype of Streptococcus thermophilus can be acquired by natural transformation of the genomic island encoding the cell-envelope proteinase PrtS
    • Dandoy, D., Fremaux, C., de Frahan, M.H., Horvath, P., Boyaval, P., Hols, P., Fontaine, L., The fast milk acidifying phenotype of Streptococcus thermophilus can be acquired by natural transformation of the genomic island encoding the cell-envelope proteinase PrtS. Microb Cell Fact, 10(Suppl. 1), 2011, S21.
    • (2011) Microb Cell Fact , vol.10 , pp. S21
    • Dandoy, D.1    Fremaux, C.2    de Frahan, M.H.3    Horvath, P.4    Boyaval, P.5    Hols, P.6    Fontaine, L.7
  • 9
    • 78650378430 scopus 로고    scopus 로고
    • Development of a versatile procedure based on natural transformation for marker-free targeted genetic modification in Streptococcus thermophilus
    • Fontaine, L., Dandoy, D., Boutry, C., Delplace, B., de Frahan, M.H., Fremaux, C., Horvath, P., Boyaval, P., Hols, P., Development of a versatile procedure based on natural transformation for marker-free targeted genetic modification in Streptococcus thermophilus. Appl Environ Microbiol 76 (2010), 7870–7877.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 7870-7877
    • Fontaine, L.1    Dandoy, D.2    Boutry, C.3    Delplace, B.4    de Frahan, M.H.5    Fremaux, C.6    Horvath, P.7    Boyaval, P.8    Hols, P.9
  • 10
    • 33645009654 scopus 로고    scopus 로고
    • Conservation of key elements of natural competence in Lactococcus lactis ssp
    • Wydau, S., Dervyn, R., Anba, J., Dusko Ehrlich, S., Maguin, E., Conservation of key elements of natural competence in Lactococcus lactis ssp. FEMS Microbiol Lett 257 (2006), 32–42.
    • (2006) FEMS Microbiol Lett , vol.257 , pp. 32-42
    • Wydau, S.1    Dervyn, R.2    Anba, J.3    Dusko Ehrlich, S.4    Maguin, E.5
  • 11
    • 85026507733 scopus 로고    scopus 로고
    • Natural DNA transformation is functional in Lactococcus lactis ssp. cremoris KW2
    • This is one of the two first papers (see also Mulderet al. [12]) reporting active natural competence in Lactococcus lactis.
    • David, B., Radziejwoski, A., Toussaint, F., Fontaine, L., Henry de Frahan, M., Patout, C., van Dillen, S., Boyaval, P., Horvath, P., Fremaux, C., et al. Natural DNA transformation is functional in Lactococcus lactis ssp. cremoris KW2. Appl Environ Microbiol 83 (2017), e01074–01017 This is one of the two first papers (see also Mulderet al. [12]) reporting active natural competence in Lactococcus lactis.
    • (2017) Appl Environ Microbiol , vol.83 , pp. e01074-01017
    • David, B.1    Radziejwoski, A.2    Toussaint, F.3    Fontaine, L.4    Henry de Frahan, M.5    Patout, C.6    van Dillen, S.7    Boyaval, P.8    Horvath, P.9    Fremaux, C.10
  • 12
    • 85030665260 scopus 로고    scopus 로고
    • Unleashing natural competence in Lactococcus lactis by induction of the competence regulator ComX
    • This is one of the two first papers (see also Davidet al. [11]) reporting active natural competence in Lactococcus lactis.
    • Mulder, J., Wels, M., Kuipers, O.P., Kleerebezem, M., Bron, P.A., Unleashing natural competence in Lactococcus lactis by induction of the competence regulator ComX. Appl Environ Microbiol 83 (2017), e01320–01317 This is one of the two first papers (see also Davidet al. [11]) reporting active natural competence in Lactococcus lactis.
    • (2017) Appl Environ Microbiol , vol.83 , pp. e01320-01317
    • Mulder, J.1    Wels, M.2    Kuipers, O.P.3    Kleerebezem, M.4    Bron, P.A.5
  • 13
    • 84857955907 scopus 로고    scopus 로고
    • Alternative sigma factor σH activates competence gene expression in Lactobacillus sakei
    • Schmid, S., Bevilacqua, C., Crutz-Le Coq, A.-M., Alternative sigma factor σH activates competence gene expression in Lactobacillus sakei. BMC Microbiol, 12, 2012, 32.
    • (2012) BMC Microbiol , vol.12 , pp. 32
    • Schmid, S.1    Bevilacqua, C.2    Crutz-Le Coq, A.-M.3
  • 14
    • 85054563335 scopus 로고    scopus 로고
    • Host range and genetic plasticity explain the co-existence of integrative and extrachromosomal mobile genetic elements
    • This paper proposes that conjugative plasmids and ICE lifestyles are interchangeable and play distinct roles in bacterial evolution, that is having increased genetic plasticity and expanded host range, respectively.
    • Cury, J., Oliveira, P.H., de la Cruz, F., Rocha, E.P.C., Host range and genetic plasticity explain the co-existence of integrative and extrachromosomal mobile genetic elements. Mol Biol Evol 35 (2018), 2230–2239 This paper proposes that conjugative plasmids and ICE lifestyles are interchangeable and play distinct roles in bacterial evolution, that is having increased genetic plasticity and expanded host range, respectively.
    • (2018) Mol Biol Evol , vol.35 , pp. 2230-2239
    • Cury, J.1    Oliveira, P.H.2    de la Cruz, F.3    Rocha, E.P.C.4
  • 15
    • 84948767494 scopus 로고    scopus 로고
    • Integrative and conjugative elements (ICEs): what they do and how they work
    • Johnson, C.M., Grossman, A.D., Integrative and conjugative elements (ICEs): what they do and how they work. Annu Rev Genet 49 (2015), 577–601.
    • (2015) Annu Rev Genet , vol.49 , pp. 577-601
    • Johnson, C.M.1    Grossman, A.D.2
  • 16
    • 85030983055 scopus 로고    scopus 로고
    • Integrative and conjugative elements and their hosts: composition, distribution and organization
    • This paper describes an elegant method for the delimitation of ICEs by exploiting the principal absence of core genome functions in ICEs.
    • Cury, J., Touchon, M., Rocha, E.P.C., Integrative and conjugative elements and their hosts: composition, distribution and organization. Nucleic Acids Res 45 (2017), 8943–8956 This paper describes an elegant method for the delimitation of ICEs by exploiting the principal absence of core genome functions in ICEs.
    • (2017) Nucleic Acids Res , vol.45 , pp. 8943-8956
    • Cury, J.1    Touchon, M.2    Rocha, E.P.C.3
  • 17
    • 85050880898 scopus 로고    scopus 로고
    • oriTfinder: a web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements
    • Li, X., Xie, Y., Liu, M., Tai, C., Sun, J., Deng, Z., Ou, H.Y., oriTfinder: a web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements. Nucleic Acids Res 46:W1 (2018), W229–W234.
    • (2018) Nucleic Acids Res , vol.46 , Issue.W1 , pp. W229-W234
    • Li, X.1    Xie, Y.2    Liu, M.3    Tai, C.4    Sun, J.5    Deng, Z.6    Ou, H.Y.7
  • 18
    • 85039870750 scopus 로고    scopus 로고
    • A practical guide for comparative genomics of mobile genetic elements in prokaryotic genomes
    • Oliveira Alvarenga, D., Moreira, L.M., Chandler, M., Varani, A.M., A practical guide for comparative genomics of mobile genetic elements in prokaryotic genomes. Methods Mol Biol 1704 (2018), 213–242.
    • (2018) Methods Mol Biol , vol.1704 , pp. 213-242
    • Oliveira Alvarenga, D.1    Moreira, L.M.2    Chandler, M.3    Varani, A.M.4
  • 19
    • 85044871986 scopus 로고    scopus 로고
    • Versatile Cas9-driven subpopulation selection toolbox for Lactococcus lactis
    • This paper describes a Cas9-based method for effective curing and effective delimitation of mobile genetic elements.
    • van der Els, S., James, J.K., Kleerebezem, M., Bron, P.A., Versatile Cas9-driven subpopulation selection toolbox for Lactococcus lactis. Appl Environ Microbiol 84 (2018), e02752–02717 This paper describes a Cas9-based method for effective curing and effective delimitation of mobile genetic elements.
    • (2018) Appl Environ Microbiol , vol.84 , pp. e02752-02717
    • van der Els, S.1    James, J.K.2    Kleerebezem, M.3    Bron, P.A.4
  • 21
    • 0029450424 scopus 로고
    • Genetics of the nisin operon and the sucrose-nisin conjugative transposon Tn5276
    • De Vos, W.M., Beerthuyzen, M.M., Luesink, E.L., Kuipers, O.P., Genetics of the nisin operon and the sucrose-nisin conjugative transposon Tn5276. Dev Biol Stand 85 (1995), 617–625.
    • (1995) Dev Biol Stand , vol.85 , pp. 617-625
    • De Vos, W.M.1    Beerthuyzen, M.M.2    Luesink, E.L.3    Kuipers, O.P.4
  • 22
    • 79551490035 scopus 로고    scopus 로고
    • Molecular description and industrial potential of Tn6098 conjugative transfer conferring alpha-galactoside metabolism in Lactococcus lactis
    • Machielsen, R., Siezen, R.J., van Hijum, S.A., van Hylckama Vlieg, J.E., Molecular description and industrial potential of Tn6098 conjugative transfer conferring alpha-galactoside metabolism in Lactococcus lactis. Appl Environ Microbiol 77 (2011), 555–563.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 555-563
    • Machielsen, R.1    Siezen, R.J.2    van Hijum, S.A.3    van Hylckama Vlieg, J.E.4
  • 23
    • 85021444537 scopus 로고    scopus 로고
    • A multibacteriocin cheese starter system, comprising nisin and lacticin 3147 in Lactococcus lactis, in combination with Plantaricin from Lactobacillus plantarum
    • Mills, S., Griffin, C., O'Connor, P.M., Serrano, L.M., Meijer, W.C., Hill, C., Ross, R.P., A multibacteriocin cheese starter system, comprising nisin and lacticin 3147 in Lactococcus lactis, in combination with Plantaricin from Lactobacillus plantarum. Appl Environ Microbiol, 83, 2017.
    • (2017) Appl Environ Microbiol , vol.83
    • Mills, S.1    Griffin, C.2    O'Connor, P.M.3    Serrano, L.M.4    Meijer, W.C.5    Hill, C.6    Ross, R.P.7
  • 25
    • 85038933877 scopus 로고    scopus 로고
    • Antibiotic resistance-susceptibility profiles of Streptococcus thermophilus isolated from raw milk and genome analysis of the genetic basis of acquired resistances
    • Florez, A.B., Mayo, B., Antibiotic resistance-susceptibility profiles of Streptococcus thermophilus isolated from raw milk and genome analysis of the genetic basis of acquired resistances. Front Microbiol, 8, 2017, 2608.
    • (2017) Front Microbiol , vol.8 , pp. 2608
    • Florez, A.B.1    Mayo, B.2
  • 27
    • 85020488316 scopus 로고    scopus 로고
    • Diversity of integrative and conjugative elements of Streptococcus salivarius and their intra- and interspecies transfer
    • Dahmane, N., Libante, V., Charron-Bourgoin, F., Guedon, E., Guedon, G., Leblond-Bourget, N., Payot, S., Diversity of integrative and conjugative elements of Streptococcus salivarius and their intra- and interspecies transfer. Appl Environ Microbiol 83 (2017), e00337–00317.
    • (2017) Appl Environ Microbiol , vol.83 , pp. e00337-00317
    • Dahmane, N.1    Libante, V.2    Charron-Bourgoin, F.3    Guedon, E.4    Guedon, G.5    Leblond-Bourget, N.6    Payot, S.7
  • 28
    • 85054563335 scopus 로고    scopus 로고
    • Host range and genetic plasticity explain the co-existence of integrative and extrachromosomal mobile genetic elements
    • Cury, J., Oliveira, P.H., de la Cruz, F., Rocha, E.P.C., Host range and genetic plasticity explain the co-existence of integrative and extrachromosomal mobile genetic elements. Mol Biol Evol 35 (2018), 2230–2239.
    • (2018) Mol Biol Evol , vol.35 , pp. 2230-2239
    • Cury, J.1    Oliveira, P.H.2    de la Cruz, F.3    Rocha, E.P.C.4
  • 29
    • 84919614715 scopus 로고    scopus 로고
    • Interaction between conjugative and retrotransposable elements in horizontal gene transfer
    • Novikova, O., Smith, D., Hahn, I., Beauregard, A., Belfort, M., Interaction between conjugative and retrotransposable elements in horizontal gene transfer. PLoS Genet, 10, 2014, e1004853.
    • (2014) PLoS Genet , vol.10 , pp. e1004853
    • Novikova, O.1    Smith, D.2    Hahn, I.3    Beauregard, A.4    Belfort, M.5
  • 30
    • 85051977564 scopus 로고    scopus 로고
    • Group II intron inhibits conjugative relaxase expression in bacteria by mRNA targeting
    • Qu, G., Piazza, C.L., Smith, D., Belfort, M., Group II intron inhibits conjugative relaxase expression in bacteria by mRNA targeting. eLife, 7, 2018, e34268.
    • (2018) eLife , vol.7 , pp. e34268
    • Qu, G.1    Piazza, C.L.2    Smith, D.3    Belfort, M.4
  • 33
    • 33646572506 scopus 로고    scopus 로고
    • Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei
    • Ventura, M., Canchaya, C., Bernini, V., Altermann, E., Barrangou, R., McGrath, S., Claesson, M.J., Li, Y., Leahy, S., Walker, C.D., et al. Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei. Appl Environ Microbiol 72 (2006), 3130–3146.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 3130-3146
    • Ventura, M.1    Canchaya, C.2    Bernini, V.3    Altermann, E.4    Barrangou, R.5    McGrath, S.6    Claesson, M.J.7    Li, Y.8    Leahy, S.9    Walker, C.D.10
  • 34
    • 84870312215 scopus 로고    scopus 로고
    • Molecular characterization and structural instability of the industrially important composite metabolic plasmid pLP712
    • Wegmann, U., Overweg, K., Jeanson, S., Gasson, M., Shearman, C., Molecular characterization and structural instability of the industrially important composite metabolic plasmid pLP712. Microbiology 158 (2012), 2936–2945.
    • (2012) Microbiology , vol.158 , pp. 2936-2945
    • Wegmann, U.1    Overweg, K.2    Jeanson, S.3    Gasson, M.4    Shearman, C.5
  • 35
    • 33646057656 scopus 로고    scopus 로고
    • Effective plasmid pX3 transduction in Lactobacillus delbrueckii by bacteriophage LL-H
    • Ravin, V., Sasaki, T., Raisanen, L., Riipinen, K.A., Alatossava, T., Effective plasmid pX3 transduction in Lactobacillus delbrueckii by bacteriophage LL-H. Plasmid 55 (2006), 184–193.
    • (2006) Plasmid , vol.55 , pp. 184-193
    • Ravin, V.1    Sasaki, T.2    Raisanen, L.3    Riipinen, K.A.4    Alatossava, T.5
  • 36
    • 41949117269 scopus 로고    scopus 로고
    • Plasmid transfer via transduction from Streptococcus thermophilus to Lactococcus lactis
    • Ammann, A., Neve, H., Geis, A., Heller, K.J., Plasmid transfer via transduction from Streptococcus thermophilus to Lactococcus lactis. J Bacteriol 190 (2008), 3083–3087.
    • (2008) J Bacteriol , vol.190 , pp. 3083-3087
    • Ammann, A.1    Neve, H.2    Geis, A.3    Heller, K.J.4
  • 37
    • 85042941571 scopus 로고    scopus 로고
    • Host recognition by lactic acid bacterial phages
    • Excellent review of the state of the art of our understanding of the molecular mechanism of phage-host recognition and its specificity in lactic acid bacteria.
    • Mahony, J., Cambillau, C., van Sinderen, D., Host recognition by lactic acid bacterial phages. FEMS Microbiol Rev 41 (2017), S16–S26 Excellent review of the state of the art of our understanding of the molecular mechanism of phage-host recognition and its specificity in lactic acid bacteria.
    • (2017) FEMS Microbiol Rev , vol.41 , pp. S16-S26
    • Mahony, J.1    Cambillau, C.2    van Sinderen, D.3
  • 40
    • 79951705599 scopus 로고    scopus 로고
    • Intercellular nanotubes mediate bacterial communication
    • Dubey, G.P., Ben-Yehuda, S., Intercellular nanotubes mediate bacterial communication. Cell 144 (2011), 590–600.
    • (2011) Cell , vol.144 , pp. 590-600
    • Dubey, G.P.1    Ben-Yehuda, S.2
  • 42
    • 33746561249 scopus 로고    scopus 로고
    • Special delivery: vesicle trafficking in prokaryotes
    • Mashburn-Warren, L.M., Whiteley, M., Special delivery: vesicle trafficking in prokaryotes. Mol Microbiol 61 (2006), 839–846.
    • (2006) Mol Microbiol , vol.61 , pp. 839-846
    • Mashburn-Warren, L.M.1    Whiteley, M.2
  • 43
    • 84876784406 scopus 로고    scopus 로고
    • Bacterial outer membrane vesicles in trafficking, communication and the host-pathogen interaction
    • Schertzer, J.W., Whiteley, M., Bacterial outer membrane vesicles in trafficking, communication and the host-pathogen interaction. J Mol Microbiol Biotechnol 23 (2013), 118–130.
    • (2013) J Mol Microbiol Biotechnol , vol.23 , pp. 118-130
    • Schertzer, J.W.1    Whiteley, M.2
  • 44
    • 85047645835 scopus 로고    scopus 로고
    • A novel extracellular vesicle-associated endodeoxyribonuclease helps Streptococcus pneumoniae evade neutrophil extracellular traps and is required for full virulence
    • Jhelum, H., Sori, H., Sehgal, D., A novel extracellular vesicle-associated endodeoxyribonuclease helps Streptococcus pneumoniae evade neutrophil extracellular traps and is required for full virulence. Sci Rep, 8, 2018, 7985.
    • (2018) Sci Rep , vol.8 , pp. 7985
    • Jhelum, H.1    Sori, H.2    Sehgal, D.3
  • 45
    • 84949604085 scopus 로고    scopus 로고
    • LL-37 triggers formation of Streptococcus pyogenes extracellular vesicle-like structures with immune stimulatory properties
    • Uhlmann, J., Rohde, M., Siemens, N., Kreikemeyer, B., Bergman, P., Johansson, L., Norrby-Teglund, A., LL-37 triggers formation of Streptococcus pyogenes extracellular vesicle-like structures with immune stimulatory properties. J Innate Immun 8 (2016), 243–257.
    • (2016) J Innate Immun , vol.8 , pp. 243-257
    • Uhlmann, J.1    Rohde, M.2    Siemens, N.3    Kreikemeyer, B.4    Bergman, P.5    Johansson, L.6    Norrby-Teglund, A.7
  • 46
    • 84938378699 scopus 로고    scopus 로고
    • Isolation, characterization and biological properties of membrane vesicles produced by the swine pathogen Streptococcus suis
    • Haas, B., Grenier, D., Isolation, characterization and biological properties of membrane vesicles produced by the swine pathogen Streptococcus suis. PLoS One, 10, 2015, e0130528.
    • (2015) PLoS One , vol.10 , pp. e0130528
    • Haas, B.1    Grenier, D.2
  • 47
    • 85021079664 scopus 로고    scopus 로고
    • The inhibitory impacts of Lactobacillus rhamnosus GG-derived extracellular vesicles on the growth of hepatic cancer cells
    • Behzadi, E., Mahmoodzadeh Hosseini, H., Imani Fooladi, A.A., The inhibitory impacts of Lactobacillus rhamnosus GG-derived extracellular vesicles on the growth of hepatic cancer cells. Microb Pathog 110 (2017), 1–6.
    • (2017) Microb Pathog , vol.110 , pp. 1-6
    • Behzadi, E.1    Mahmoodzadeh Hosseini, H.2    Imani Fooladi, A.A.3
  • 48
    • 85015054280 scopus 로고    scopus 로고
    • Lactobacillus-derived extracellular vesicles enhance host immune responses against vancomycin-resistant enterococci
    • Li, M., Lee, K., Hsu, M., Nau, G., Mylonakis, E., Ramratnam, B., Lactobacillus-derived extracellular vesicles enhance host immune responses against vancomycin-resistant enterococci. BMC Microbiol, 17, 2017, 66.
    • (2017) BMC Microbiol , vol.17 , pp. 66
    • Li, M.1    Lee, K.2    Hsu, M.3    Nau, G.4    Mylonakis, E.5    Ramratnam, B.6
  • 51
    • 85029280775 scopus 로고    scopus 로고
    • Evolutionary genomics of defense systems in archaea and bacteria
    • Koonin, E.V., Makarova, K.S., Wolf, Y.I., Evolutionary genomics of defense systems in archaea and bacteria. Annu Rev Microbiol 71 (2017), 233–261.
    • (2017) Annu Rev Microbiol , vol.71 , pp. 233-261
    • Koonin, E.V.1    Makarova, K.S.2    Wolf, Y.I.3
  • 52
    • 84959889614 scopus 로고    scopus 로고
    • CRISPR-based typing and next-generation tracking technologies
    • Barrangou, R., Dudley, E.G., CRISPR-based typing and next-generation tracking technologies. Annu Rev Food Sci Technol 7 (2016), 395–411.
    • (2016) Annu Rev Food Sci Technol , vol.7 , pp. 395-411
    • Barrangou, R.1    Dudley, E.G.2
  • 54
    • 84876001507 scopus 로고    scopus 로고
    • The population and evolutionary dynamics of phage and bacteria with CRISPR-mediated immunity
    • Levin, B.R., Moineau, S., Bushman, M., Barrangou, R., The population and evolutionary dynamics of phage and bacteria with CRISPR-mediated immunity. PLoS Genet, 9, 2013, e1003312.
    • (2013) PLoS Genet , vol.9 , pp. e1003312
    • Levin, B.R.1    Moineau, S.2    Bushman, M.3    Barrangou, R.4
  • 56
    • 85044959586 scopus 로고    scopus 로고
    • Evolved Cas9 variants with broad PAM compatibility and high DNA specificity
    • This paper describes the phage-assisted evolution of Cas9 to accommodate a broader spectrum of PAM target sequence.
    • Hu, J.H., Miller, S.M., Geurts, M.H., Tang, W., Chen, L., Sun, N., Zeina, C.M., Gao, X., Rees, H.A., Lin, Z., et al. Evolved Cas9 variants with broad PAM compatibility and high DNA specificity. Nature 556 (2018), 57–63 This paper describes the phage-assisted evolution of Cas9 to accommodate a broader spectrum of PAM target sequence.
    • (2018) Nature , vol.556 , pp. 57-63
    • Hu, J.H.1    Miller, S.M.2    Geurts, M.H.3    Tang, W.4    Chen, L.5    Sun, N.6    Zeina, C.M.7    Gao, X.8    Rees, H.A.9    Lin, Z.10
  • 57
    • 84974717567 scopus 로고    scopus 로고
    • CRISPR/Cas9 in genome editing and beyond
    • Wang, H., La Russa, M., Qi, L.S., CRISPR/Cas9 in genome editing and beyond. Annu Rev Biochem 85 (2016), 227–264.
    • (2016) Annu Rev Biochem , vol.85 , pp. 227-264
    • Wang, H.1    La Russa, M.2    Qi, L.S.3
  • 58
    • 84970046200 scopus 로고    scopus 로고
    • Consequences of Cas9 cleavage in the chromosome of Escherichia coli
    • Cui, L., Bikard, D., Consequences of Cas9 cleavage in the chromosome of Escherichia coli. Nucleic Acids Res 44 (2016), 4243–4251.
    • (2016) Nucleic Acids Res , vol.44 , pp. 4243-4251
    • Cui, L.1    Bikard, D.2
  • 59
    • 84937886246 scopus 로고    scopus 로고
    • CRISPR-based screening of genomic island excision events in bacteria
    • Selle, K., Klaenhammer, T.R., Barrangou, R., CRISPR-based screening of genomic island excision events in bacteria. Proc Natl Acad Sci U S A 112 (2015), 8076–8081.
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. 8076-8081
    • Selle, K.1    Klaenhammer, T.R.2    Barrangou, R.3
  • 60
    • 85018762216 scopus 로고    scopus 로고
    • Elimination of the cryptic plasmid in Leuconostoc citreum by CRISPR/Cas9 system
    • Jang, Y.J., Seo, S.O., Kim, S.A., Li, L., Kim, T.J., Kim, S.C., Jin, Y.S., Han, N.S., Elimination of the cryptic plasmid in Leuconostoc citreum by CRISPR/Cas9 system. J Biotechnol 251 (2017), 151–155.
    • (2017) J Biotechnol , vol.251 , pp. 151-155
    • Jang, Y.J.1    Seo, S.O.2    Kim, S.A.3    Li, L.4    Kim, T.J.5    Kim, S.C.6    Jin, Y.S.7    Han, N.S.8
  • 61
    • 85020703557 scopus 로고    scopus 로고
    • Genome engineering of virulent lactococcal phages using CRISPR-Cas9
    • Lemay, M.L., Tremblay, D.M., Moineau, S., Genome engineering of virulent lactococcal phages using CRISPR-Cas9. ACS Synth Biol 6 (2017), 1351–1358.
    • (2017) ACS Synth Biol , vol.6 , pp. 1351-1358
    • Lemay, M.L.1    Tremblay, D.M.2    Moineau, S.3
  • 62
    • 84906216646 scopus 로고    scopus 로고
    • CRISPR-Cas: an efficient tool for genome engineering of virulent bacteriophages
    • Martel, B., Moineau, S., CRISPR-Cas: an efficient tool for genome engineering of virulent bacteriophages. Nucleic Acids Res 42 (2014), 9504–9513.
    • (2014) Nucleic Acids Res , vol.42 , pp. 9504-9513
    • Martel, B.1    Moineau, S.2
  • 63
    • 84964315717 scopus 로고    scopus 로고
    • CRISPR-Cas9-assisted recombineering in Lactobacillus reuteri
    • Oh, J.H., van Pijkeren, J.P., CRISPR-Cas9-assisted recombineering in Lactobacillus reuteri. Nucleic Acids Res, 42, 2014, e131.
    • (2014) Nucleic Acids Res , vol.42 , pp. e131
    • Oh, J.H.1    van Pijkeren, J.P.2
  • 64
    • 85032683575 scopus 로고    scopus 로고
    • CRISPR-Cas9(D10A) nickase-assisted genome editing in Lactobacillus casei
    • Song, X., Huang, H., Xiong, Z., Ai, L., Yang, S., CRISPR-Cas9(D10A) nickase-assisted genome editing in Lactobacillus casei. Appl Environ Microbiol 83 (2017), e01259–01217.
    • (2017) Appl Environ Microbiol , vol.83 , pp. e01259-01217
    • Song, X.1    Huang, H.2    Xiong, Z.3    Ai, L.4    Yang, S.5
  • 65
    • 85040775746 scopus 로고    scopus 로고
    • Single plasmid systems for inducible dual protein expression and for CRISPR-Cas9/CRISPRi gene regulation in lactic acid bacterium Lactococcus lactis
    • Berlec, A., Skrlec, K., Kocjan, J., Olenic, M., Strukelj, B., Single plasmid systems for inducible dual protein expression and for CRISPR-Cas9/CRISPRi gene regulation in lactic acid bacterium Lactococcus lactis. Sci Rep, 8, 2018, 1009.
    • (2018) Sci Rep , vol.8 , pp. 1009
    • Berlec, A.1    Skrlec, K.2    Kocjan, J.3    Olenic, M.4    Strukelj, B.5
  • 66
    • 85034861903 scopus 로고    scopus 로고
    • Programmable base editing of A*T to G*C in genomic DNA without DNA cleavage
    • This paper describes the use of dCas9 fused to base editor functions, enabling targeted, single-step, ‘true’ genome editing in prokaryotic genomes.
    • Gaudelli, N.M., Komor, A.C., Rees, H.A., Packer, M.S., Badran, A.H., Bryson, D.I., Liu, D.R., Programmable base editing of A*T to G*C in genomic DNA without DNA cleavage. Nature 551 (2017), 464–471 This paper describes the use of dCas9 fused to base editor functions, enabling targeted, single-step, ‘true’ genome editing in prokaryotic genomes.
    • (2017) Nature , vol.551 , pp. 464-471
    • Gaudelli, N.M.1    Komor, A.C.2    Rees, H.A.3    Packer, M.S.4    Badran, A.H.5    Bryson, D.I.6    Liu, D.R.7
  • 67
    • 84971006562 scopus 로고    scopus 로고
    • Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage
    • Komor, A.C., Kim, Y.B., Packer, M.S., Zuris, J.A., Liu, D.R., Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage. Nature 533 (2016), 420–424.
    • (2016) Nature , vol.533 , pp. 420-424
    • Komor, A.C.1    Kim, Y.B.2    Packer, M.S.3    Zuris, J.A.4    Liu, D.R.5
  • 68
    • 85038965174 scopus 로고    scopus 로고
    • Future access and improvement of industrial lactic acid bacteria cultures
    • Johansen, E., Future access and improvement of industrial lactic acid bacteria cultures. Microb Cell Fact, 16, 2017, 230.
    • (2017) Microb Cell Fact , vol.16 , pp. 230
    • Johansen, E.1
  • 69
    • 0037113945 scopus 로고    scopus 로고
    • Preservation and fermentation: past, present and future
    • Ross, R.P., Morgan, S., Hill, C., Preservation and fermentation: past, present and future. Int J Food Microbiol 79 (2002), 3–16.
    • (2002) Int J Food Microbiol , vol.79 , pp. 3-16
    • Ross, R.P.1    Morgan, S.2    Hill, C.3
  • 70
    • 85016157609 scopus 로고    scopus 로고
    • High-throughput system-wide engineering and screening for microbial biotechnology
    • This paper reviews state of the art high throughput screening methods for microbes, including the application of nano reactors for single cell screening that paves the way to recognize and isolate variants with non-selectable phenotypes.
    • Vervoort, Y., Linares, A.G., Roncoroni, M., Liu, C., Steensels, J., Verstrepen, K.J., High-throughput system-wide engineering and screening for microbial biotechnology. Curr Opin Biotechnol 46 (2017), 120–125 This paper reviews state of the art high throughput screening methods for microbes, including the application of nano reactors for single cell screening that paves the way to recognize and isolate variants with non-selectable phenotypes.
    • (2017) Curr Opin Biotechnol , vol.46 , pp. 120-125
    • Vervoort, Y.1    Linares, A.G.2    Roncoroni, M.3    Liu, C.4    Steensels, J.5    Verstrepen, K.J.6
  • 72
    • 85040714055 scopus 로고    scopus 로고
    • Advances in microfluidics applied to single cell operation
    • Zhu, X.D., Chu, J., Wang, Y.H., Advances in microfluidics applied to single cell operation. Biotechnol J, 13, 2018.
    • (2018) Biotechnol J , vol.13
    • Zhu, X.D.1    Chu, J.2    Wang, Y.H.3
  • 73
    • 0346964274 scopus 로고    scopus 로고
    • Recognition of individual genes in a single bacterial cell by fluorescence in situ hybridization—RING-FISH
    • Zwirglmaier, K., Ludwig, W., Schleifer, K.H., Recognition of individual genes in a single bacterial cell by fluorescence in situ hybridization—RING-FISH. Mol Microbiol 51 (2004), 89–96.
    • (2004) Mol Microbiol , vol.51 , pp. 89-96
    • Zwirglmaier, K.1    Ludwig, W.2    Schleifer, K.H.3
  • 74
    • 54349113792 scopus 로고    scopus 로고
    • DNA mimics for the rapid identification of microorganisms by fluorescence in situ hybridization (FISH)
    • Cerqueira, L., Azevedo, N.F., Almeida, C., Jardim, T., Keevil, C.W., Vieira, M.J., DNA mimics for the rapid identification of microorganisms by fluorescence in situ hybridization (FISH). Int J Mol Sci 9 (2008), 1944–1960.
    • (2008) Int J Mol Sci , vol.9 , pp. 1944-1960
    • Cerqueira, L.1    Azevedo, N.F.2    Almeida, C.3    Jardim, T.4    Keevil, C.W.5    Vieira, M.J.6


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