메뉴 건너뛰기




Volumn 72, Issue 5, 2006, Pages 3130-3146

Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivanus, and Lactobacillus casei

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BIODIVERSITY; ELECTROPHORESIS; GENES; GENETIC ENGINEERING; MICROBIOLOGY; RNA;

EID: 33646572506     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.72.5.3130-3146.2006     Document Type: Article
Times cited : (60)

References (44)
  • 1
    • 0032798540 scopus 로고    scopus 로고
    • Primary structure and features of the genome of the Lactobacillus gasseri temperate bacteriophage φadh
    • Altermann, E., J. R. Klein, and B. Henrich. 1999. Primary structure and features of the genome of the Lactobacillus gasseri temperate bacteriophage φadh. Gene 236:333-346.
    • (1999) Gene , vol.236 , pp. 333-346
    • Altermann, E.1    Klein, J.R.2    Henrich, B.3
  • 5
    • 0028839570 scopus 로고
    • Identification of prophage genes expressed in lysogens of the Lactococcus lactis bacteriophage BK5-T
    • Boyce, J. D., B. E. Davidson, and A. J. Killer. 1995. Identification of prophage genes expressed in lysogens of the Lactococcus lactis bacteriophage BK5-T. Appl. Environ. Microbiol. 61:4099-4104.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 4099-4104
    • Boyce, J.D.1    Davidson, B.E.2    Killer, A.J.3
  • 6
    • 0036843960 scopus 로고    scopus 로고
    • Common themes among bacteriophage-encoded virulence factors and diversity among the bacteriophages involved
    • Boyd, E. F., and H. Brussow. 2002. Common themes among bacteriophage-encoded virulence factors and diversity among the bacteriophages involved. Trends Microbiol. 10:521-529.
    • (2002) Trends Microbiol. , vol.10 , pp. 521-529
    • Boyd, E.F.1    Brussow, H.2
  • 8
    • 0000332222 scopus 로고
    • Evolution of dsDNA tailed-bacteriophage genomes
    • Casjens, S., G. Hatfull, and R. Hendrix. 1992. Evolution of dsDNA tailed-bacteriophage genomes. Semin. Virol. 3:383-397.
    • (1992) Semin. Virol. , vol.3 , pp. 383-397
    • Casjens, S.1    Hatfull, G.2    Hendrix, R.3
  • 9
    • 0035253405 scopus 로고    scopus 로고
    • Analysis of six prophages in Lactococcus lactis IL1403: Different genetic structure of temperate and virulent phage populations
    • Chopin, A., A. Bolotin, A. Sorokin, S. D. Ehrlich, and M. Chopin. 2001. Analysis of six prophages in Lactococcus lactis IL1403: different genetic structure of temperate and virulent phage populations. Nucleic Acids Res. 29:644-651.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 644-651
    • Chopin, A.1    Bolotin, A.2    Sorokin, A.3    Ehrlich, S.D.4    Chopin, M.5
  • 10
    • 0034734832 scopus 로고    scopus 로고
    • Comparative genomics of the late gene cluster from Lactobacillus phages
    • Desiere, F., and H. Brussow. 2000. Comparative genomics of the late gene cluster from Lactobacillus phages. Virology 275:294-305.
    • (2000) Virology , vol.275 , pp. 294-305
    • Desiere, F.1    Brussow, H.2
  • 11
    • 0035975594 scopus 로고    scopus 로고
    • Comparative genomics reveals close genetic relationships between phages from dairy bacteria and pathogenic streptococci: Evolutionary implications for prophage-host interactions
    • Desiere, F., W. M. McShan, D. van Sinderen, J. J. Ferretti, and H. Brussow. 2001. Comparative genomics reveals close genetic relationships between phages from dairy bacteria and pathogenic streptococci: evolutionary implications for prophage-host interactions. Virology 288:325-341.
    • (2001) Virology , vol.288 , pp. 325-341
    • Desiere, F.1    McShan, W.M.2    Van Sinderen, D.3    Ferretti, J.J.4    Brussow, H.5
  • 13
    • 0033987383 scopus 로고    scopus 로고
    • Widespread distribution of a group I intron and its three deletion derivatives in the lysin gene of Streptococcus thermophilus bacteriophages
    • Foley, S., A. Bruttin, and H. Brussow. 2000. Widespread distribution of a group I intron and its three deletion derivatives in the lysin gene of Streptococcus thermophilus bacteriophages. J. Virol. 74:611-618.
    • (2000) J. Virol. , vol.74 , pp. 611-618
    • Foley, S.1    Bruttin, A.2    Brussow, H.3
  • 14
    • 0026722016 scopus 로고
    • Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonym of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with type-strain of Lactobacillus amylovorus (Nakamura 1981)
    • Fujishawa, T., Y. Benno, T. Yaeshima, and T. Mitsuoka. 1992. Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonym of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with type-strain of Lactobacillus amylovorus (Nakamura 1981). Int. J. Syst. Bacteriol. 42:487-491.
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 487-491
    • Fujishawa, T.1    Benno, Y.2    Yaeshima, T.3    Mitsuoka, T.4
  • 15
    • 0028954627 scopus 로고
    • Primary structure and functional analysis of the lysis genes of Lactobacillus gasseri bacteriophage phi adh
    • Hendrich, B., B. Binishofer, and U. Blasi. 1995. Primary structure and functional analysis of the lysis genes of Lactobacillus gasseri bacteriophage phi adh. J. Bacteriol. 177:723-732.
    • (1995) J. Bacteriol. , vol.177 , pp. 723-732
    • Hendrich, B.1    Binishofer, B.2    Blasi, U.3
  • 16
    • 0036408356 scopus 로고    scopus 로고
    • Identification of a novel family of sequence repeats among prokaryotes
    • Jansen, R., J. D. van Embden, W. Gaastra, and L. M. Schouls. 2002. Identification of a novel family of sequence repeats among prokaryotes. OMICS 6:23-33.
    • (2002) OMICS , vol.6 , pp. 23-33
    • Jansen, R.1    Van Embden, J.D.2    Gaastra, W.3    Schouls, L.M.4
  • 18
    • 0000219186 scopus 로고
    • Regular, nonsporing gram-positive rods
    • P. H. A. Sneath, N. S. Main M. E. Sharpe, and J. G. Holt (ed.), William & Wilkins, Baltimore, Md.
    • Kandler, O., and N. Weiss. 1986. Regular, nonsporing gram-positive rods, p. 1208-1260. In P. H. A. Sneath, N. S. Main M. E. Sharpe, and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, vol. 2. William & Wilkins, Baltimore, Md.
    • (1986) Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 1208-1260
    • Kandler, O.1    Weiss, N.2
  • 19
    • 0032541129 scopus 로고    scopus 로고
    • Complete nucleotide sequence and molecular characterization of the temperate staphylococcal bacteriophage PVL carrying Panton-Valentine leukocidin genes
    • Kaneko, J., T. Kimura, S. Narita, T. Tomita, and Y. Kamio. 1998. Complete nucleotide sequence and molecular characterization of the temperate staphylococcal bacteriophage PVL carrying Panton-Valentine leukocidin genes. Gene 215:57-67.
    • (1998) Gene , vol.215 , pp. 57-67
    • Kaneko, J.1    Kimura, T.2    Narita, S.3    Tomita, T.4    Kamio, Y.5
  • 21
    • 0031039129 scopus 로고    scopus 로고
    • Genome structure of the Lactobacillus temperate phage φg1e: The whole genome sequence and the putative promoter/repressor system
    • Kodaira, K. I., M. Kakikawa, N. Watanabe, M. Hirakawa, K. Yamada, and A. Taketo. 1997. Genome structure of the Lactobacillus temperate phage φg1e: the whole genome sequence and the putative promoter/repressor system. Gene 187:45-53.
    • (1997) Gene , vol.187 , pp. 45-53
    • Kodaira, K.I.1    Kakikawa, M.2    Watanabe, N.3    Hirakawa, M.4    Yamada, K.5    Taketo, A.6
  • 22
    • 0027208795 scopus 로고
    • Mechanisms of genome propagation and helper exploitation by satellite phage P4
    • Lindqvist, B. H., G. Deho, and R. Calendar. 1993. Mechanisms of genome propagation and helper exploitation by satellite phage P4. Microbiol. Rev. 57:683-702.
    • (1993) Microbiol. Rev. , vol.57 , pp. 683-702
    • Lindqvist, B.H.1    Deho, G.2    Calendar, R.3
  • 23
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity searches
    • Lipinan, D. J., and W. R. Pearson. 1985. Rapid and sensitive protein similarity searches. Science 227:1435-1441.
    • (1985) Science , vol.227 , pp. 1435-1441
    • Lipinan, D.J.1    Pearson, W.R.2
  • 24
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. M., and S. R. Eddy. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 25
    • 0038439524 scopus 로고    scopus 로고
    • Isolation and characterization of a Lactobacillus plantarum bacteriophage, φJL-1, from a cucumber fermentation
    • Lu, Z., F. Breidt, Jr., H. P. Fleming, E. Altermann, and T. R. Klaenhammer. 2003. Isolation and characterization of a Lactobacillus plantarum bacteriophage, φJL-1, from a cucumber fermentation. Int. J. Food Microbiol. 84:225-235.
    • (2003) Int. J. Food Microbiol. , vol.84 , pp. 225-235
    • Lu, Z.1    Breidt Jr., F.2    Fleming, H.P.3    Altermann, E.4    Klaenhammer, T.R.5
  • 26
    • 0032844934 scopus 로고    scopus 로고
    • Comparative genomics of Streptococcus thermophilus phage species supports a modular evolution theory
    • Lucchini, S., F. Desiere, and H. Brussow. 1999. Comparative genomics of Streptococcus thermophilus phage species supports a modular evolution theory. J. Virol. 73:8647-8656.
    • (1999) J. Virol. , vol.73 , pp. 8647-8656
    • Lucchini, S.1    Desiere, F.2    Brussow, H.3
  • 27
    • 0033604287 scopus 로고    scopus 로고
    • Similarly organized lysogeny modules in temperate Siphoviridae from low GC content gram-positive bacteria
    • Lucchini, S., F. Desiere, and H. Brussow. 1999. Similarly organized lysogeny modules in temperate Siphoviridae from low GC content gram-positive bacteria. Virology 263:427-435.
    • (1999) Virology , vol.263 , pp. 427-435
    • Lucchini, S.1    Desiere, F.2    Brussow, H.3
  • 28
    • 0036172406 scopus 로고    scopus 로고
    • Identification and characterization of phage-resistance genes in temperate lactococcal bacteriophages
    • McGrath, S., G. F. Fitzgerald, and D. van Sinderen. 2002. Identification and characterization of phage-resistance genes in temperate lactococcal bacteriophages. Mol. Microbiol. 43:509-520.
    • (2002) Mol. Microbiol. , vol.43 , pp. 509-520
    • McGrath, S.1    Fitzgerald, G.F.2    Van Sinderen, D.3
  • 29
    • 0032924950 scopus 로고    scopus 로고
    • Molecular characterization of a phage-encoded resistance system in Lactococcus lactis
    • McGrath, S., J. Seegers, G. F. Fitzgerald, and D. van Sinderen. 1999. Molecular characterization of a phage-encoded resistance system in Lactococcus lactis. Appl. Environ. Microbiol. 65:1891-1899.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1891-1899
    • McGrath, S.1    Seegers, J.2    Fitzgerald, G.F.3    Van Sinderen, D.4
  • 30
    • 0029954540 scopus 로고    scopus 로고
    • The urea cycle of Helicobacter pylori
    • Mendz, G. L., and S. L. Hazell. 1996. The urea cycle of Helicobacter pylori. Microbiology 142:2959-2967.
    • (1996) Microbiology , vol.142 , pp. 2959-2967
    • Mendz, G.L.1    Hazell, S.L.2
  • 31
    • 0029882472 scopus 로고    scopus 로고
    • Defective site-specific integration elements are present in the genome of virulent bacteriophage LL-H of Lactobacillus delbrueckii
    • Mikkonen, M., L. Dupont, T. Alatossava, and P. Ritzenthaler. 1996. Defective site-specific integration elements are present in the genome of virulent bacteriophage LL-H of Lactobacillus delbrueckii Appl. Environ. Microbiol. 62:1847-1851.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1847-1851
    • Mikkonen, M.1    Dupont, L.2    Alatossava, T.3    Ritzenthaler, P.4
  • 32
    • 0030946721 scopus 로고    scopus 로고
    • Combining the hok/sok, parDE, and pnd postsegregational killer loci to enhance plasmid stability
    • Pecota, D. C., C. S. Kim, K. Wu, K. Gerdes, and T. K. Wood. 1997. Combining the hok/sok, parDE, and pnd postsegregational killer loci to enhance plasmid stability. Appl. Environ. Microbiol. 63:1917-1924.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1917-1924
    • Pecota, D.C.1    Kim, C.S.2    Wu, K.3    Gerdes, K.4    Wood, T.K.5
  • 34
    • 0036838138 scopus 로고    scopus 로고
    • The dilemma of phage taxonomy illustrated by comparative gcnomics of Sfi21-like Siphoviridae in lactic acid bacteria
    • Proux, C., D. van Sinderen, J. Suarez, P. Garcia, V. Ladero, G. F. Fitzgerald, F. Desiere, and H. Brussow. 2002. The dilemma of phage taxonomy illustrated by comparative gcnomics of Sfi21-like Siphoviridae in lactic acid bacteria. J. Bacteriol. 184:6026-6036.
    • (2002) J. Bacteriol. , vol.184 , pp. 6026-6036
    • Proux, C.1    Van Sinderen, D.2    Suarez, J.3    Garcia, P.4    Ladero, V.5    Fitzgerald, G.F.6    Desiere, F.7    Brussow, H.8
  • 35
    • 0036330981 scopus 로고    scopus 로고
    • The phage proteomic tree: A genome based taxonomy for phage
    • Rohwer, F., and R. Edwards. 2002. The phage proteomic tree: a genome based taxonomy for phage. J. Bacteriol. 184:4529-4535.
    • (2002) J. Bacteriol. , vol.184 , pp. 4529-4535
    • Rohwer, F.1    Edwards, R.2
  • 36
    • 1942521220 scopus 로고    scopus 로고
    • Gcnomic organization and molecular analysis of the inducible prophage EJ-1, a mosaic myovirus from an atypical pneumococcus
    • Romero, P., R. Lopez, and E. Garcia. 2004. Gcnomic organization and molecular analysis of the inducible prophage EJ-1, a mosaic myovirus from an atypical pneumococcus. Virology 322:239-252.
    • (2004) Virology , vol.322 , pp. 239-252
    • Romero, P.1    Lopez, R.2    Garcia, E.3
  • 38
    • 0036434356 scopus 로고    scopus 로고
    • Transcription analysis of Streptococcus thermophilus phages in the lysogenic state
    • Ventura, M., A. Bruttin, C. Canchaya, and H. Bruessow. 2002. Transcription analysis of Streptococcus thermophilus phages in the lysogenic state. Virology 302:21-32.
    • (2002) Virology , vol.302 , pp. 21-32
    • Ventura, M.1    Bruttin, A.2    Canchaya, C.3    Bruessow, H.4
  • 39
    • 0038782101 scopus 로고    scopus 로고
    • Integration and distribution of Lactobacillus johnsonii prophages
    • Ventura, M., C. Canchaya, and H. Brussow. 2003. Integration and distribution of Lactobacillus johnsonii prophages. J. Bacteriol. 185:4603-4608.
    • (2003) J. Bacteriol. , vol.185 , pp. 4603-4608
    • Ventura, M.1    Canchaya, C.2    Brussow, H.3
  • 40
    • 1542375392 scopus 로고    scopus 로고
    • The prophages of Lactobacillus johnsonii NCC 533: Comparative genomics and transcription analysis
    • Ventura, M., C. Canchaya, and H. Brussow. 2004. The prophages of Lactobacillus johnsonii NCC 533: comparative genomics and transcription analysis. Virology 320:229-242.
    • (2004) Virology , vol.320 , pp. 229-242
    • Ventura, M.1    Canchaya, C.2    Brussow, H.3
  • 43
    • 0036346031 scopus 로고    scopus 로고
    • Transcription mapping as a tool in phage genomics: The case of temperate Streptococcus thermophilus phage Sfi21
    • Ventura, M., S. Foley, A. Bruttin, C. Canchaya, and H. Brussow. 2003. Transcription mapping as a tool in phage genomics: the case of temperate Streptococcus thermophilus phage Sfi21. Virology 296:62-76.
    • (2003) Virology , vol.296 , pp. 62-76
    • Ventura, M.1    Foley, S.2    Bruttin, A.3    Canchaya, C.4    Brussow, H.5
  • 44


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.