-
1
-
-
77956268224
-
Resolving lineage assignation on Mycobacterium tuberculosis clinical isolates classified by spoligotyping with a new high-throughput 3R SNPs based method
-
Abadia E, Zhang J, dos Vultos T, Ritacco V, Kremer K, et al. 2010. Resolving lineage assignation on Mycobacterium tuberculosis clinical isolates classified by spoligotyping with a new high-throughput 3R SNPs based method. Infect. Genet. Evol. 10:1066-74
-
(2010)
Infect. Genet. Evol.
, vol.10
, pp. 1066-1074
-
-
Abadia, E.1
Zhang, J.2
Dos Vultos, T.3
Ritacco, V.4
Kremer, K.5
-
2
-
-
79955133408
-
The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method: Providing guidelines for quality assurance when working on membranes
-
Abadia E, Zhang J, Ritacco V, Kremer K, Tuimy R, et al. 2011. The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method: providing guidelines for quality assurance when working on membranes. BMC Infect. Dis. 11:110
-
(2011)
BMC Infect. Dis.
, vol.11
, pp. 110
-
-
Abadia, E.1
Zhang, J.2
Ritacco, V.3
Kremer, K.4
Tuimy, R.5
-
3
-
-
79960468271
-
Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage
-
Anderson RE, Brazelton WJ, Baross JA. 2011. Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage. FEMS Microbiol. Ecol. 77:120-33
-
(2011)
FEMS Microbiol. Ecol.
, vol.77
, pp. 120-133
-
-
Anderson, R.E.1
Brazelton, W.J.2
Baross, J.A.3
-
4
-
-
44449133775
-
Virus population dynamics and acquired virus resistance in naturalmicrobial communities
-
Andersson AF, Banfield JF. 2008. Virus population dynamics and acquired virus resistance in naturalmicrobial communities. Science 320:1047-50
-
(2008)
Science
, vol.320
, pp. 1047-1050
-
-
Andersson, A.F.1
Banfield, J.F.2
-
5
-
-
84876440888
-
CRISPR-Cas systems and RNA-guided interference
-
Barrangou R. 2013. CRISPR-Cas systems and RNA-guided interference. Wiley Interdiscip. Rev. RNA 4:267-78
-
(2013)
Wiley Interdiscip. Rev. RNA
, vol.4
, pp. 267-278
-
-
Barrangou, R.1
-
6
-
-
84920871112
-
The roles of CRISPR-Cas systems in adaptive immunity and beyond
-
Barrangou R. 2015. The roles of CRISPR-Cas systems in adaptive immunity and beyond. Curr. Opin. Immunol. 32:36-41
-
(2015)
Curr. Opin. Immunol.
, vol.32
, pp. 36-41
-
-
Barrangou, R.1
-
7
-
-
67649397594
-
Comparison of the complete genome sequences of Bifidobacterium animalis subsp. LactisDSM10140 and Bl-04
-
Barrangou R, Briczinski EP, Traeger LL, Loquasto JR, Richards M, et al. 2009. Comparison of the complete genome sequences of Bifidobacterium animalis subsp. LactisDSM10140 and Bl-04. J. Bacteriol. 191:4144-51
-
(2009)
J. Bacteriol.
, vol.191
, pp. 4144-4151
-
-
Barrangou, R.1
Briczinski, E.P.2
Traeger, L.L.3
Loquasto, J.R.4
Richards, M.5
-
8
-
-
84887855994
-
Genomic impact of CRISPR immunization against bacteriophages
-
Barrangou R, Côuté-Monvoisin AC, Stahl B, Chavichvily I, Damange F, et al. 2013. Genomic impact of CRISPR immunization against bacteriophages. Biochem. Soc. Trans. 41:1383-91
-
(2013)
Biochem. Soc. Trans.
, vol.41
, pp. 1383-1391
-
-
Barrangou, R.1
Côuté-Monvoisin, A.C.2
Stahl, B.3
Chavichvily, I.4
Damange, F.5
-
9
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou R, FremauxC, DeveauH, Richards M, Boyaval P, et al. 2007. CRISPR provides acquired resistance against viruses in prokaryotes. Science 315:1709-12
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
-
10
-
-
84862657238
-
CRISPR: New horizons in phage resistance and strain identification
-
Barrangou R, Horvath P. 2012. CRISPR: new horizons in phage resistance and strain identification. Annu. Rev. Food Sci. Technol. 3:143-62
-
(2012)
Annu. Rev. Food Sci. Technol.
, vol.3
, pp. 143-162
-
-
Barrangou, R.1
Horvath, P.2
-
11
-
-
84899134190
-
CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunity
-
Barrangou R, Marraffini LA. 2014. CRISPR-Cas systems: prokaryotes upgrade to adaptive immunity. Mol. Cell 54:234-44
-
(2014)
Mol. Cell
, vol.54
, pp. 234-244
-
-
Barrangou, R.1
Marraffini, L.A.2
-
12
-
-
84923107960
-
Unraveling the potential of CRISPR-Cas9 for gene therapy
-
Barrangou R, May AP. 2015. Unraveling the potential of CRISPR-Cas9 for gene therapy. Expert Opin. Biol. Ther. 15:311-14
-
(2015)
Expert Opin. Biol. Ther.
, vol.15
, pp. 311-314
-
-
Barrangou, R.1
May, A.P.2
-
13
-
-
23844505202
-
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
-
Bolotin A, Quinquis B, Sorokin A, Ehrlich SD. 2005. Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 151:2551-61
-
(2005)
Microbiology
, vol.151
, pp. 2551-2561
-
-
Bolotin, A.1
Quinquis, B.2
Sorokin, A.3
Ehrlich, S.D.4
-
14
-
-
79957859266
-
Using affinity propagation for identifying subspecies among clonal organisms: Lessons from M. Tuberculosis
-
Borile C, Labarre M, Franz S, Sola C, Refregier G. 2011. Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. Tuberculosis. BCM Bioinform. 12:224
-
(2011)
BCM Bioinform.
, vol.12
, pp. 224
-
-
Borile, C.1
Labarre, M.2
Franz, S.3
Sola, C.4
Refregier, G.5
-
15
-
-
84857044523
-
Food fermentations: Microorganisms with technological beneficial use
-
Bourdichon F, Casaregola S, Farrokh C, Frisvad JC, Gerds ML, et al. 2012. Food fermentations: microorganisms with technological beneficial use. Int. J. Food Microbiol. 154:87-97
-
(2012)
Int. J. Food Microbiol.
, vol.154
, pp. 87-97
-
-
Bourdichon, F.1
Casaregola, S.2
Farrokh, C.3
Frisvad, J.C.4
Gerds, M.L.5
-
16
-
-
84892992798
-
Lactobacillus buchneri genotyping on the basis of clustered regularly interspaced short palindromic repeat (CRISPR) locus diversity
-
Briner AE, Barrangou R. 2014. Lactobacillus buchneri genotyping on the basis of clustered regularly interspaced short palindromic repeat (CRISPR) locus diversity. Appl. Environ. Microbiol. 80:994-1001
-
(2014)
Appl. Environ. Microbiol.
, vol.80
, pp. 994-1001
-
-
Briner, A.E.1
Barrangou, R.2
-
17
-
-
84941992154
-
Occurrence and diversity of CRISPR-Cas systems in the genus Bifidobacterium
-
Briner AE, Lugli GA, Milani C, Duranti S, Turroni F, et al. 2015. Occurrence and diversity of CRISPR-Cas systems in the genus Bifidobacterium. PLOS ONE 10:e0133661
-
(2015)
PLOS ONE
, vol.10
, pp. e0133661
-
-
Briner, A.E.1
Lugli, G.A.2
Milani, C.3
Duranti, S.4
Turroni, F.5
-
18
-
-
84867018919
-
Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation
-
Broadbent JR, Neeno-Eckwall EC, Stahl B, Tandee K, Cai H, et al. 2012. Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation. BMC Genomics 13:533
-
(2012)
BMC Genomics
, vol.13
, pp. 533
-
-
Broadbent, J.R.1
Neeno-Eckwall, E.C.2
Stahl, B.3
Tandee, K.4
Cai, H.5
-
19
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns SJ, Jore MM, Lundgren M, Westra ER, Slijkhuis RJ, et al. 2008. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321:960-64
-
(2008)
Science
, vol.321
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.5
-
20
-
-
33646227714
-
Mycobacterium tuberculosis complex genetic diversity: Mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
-
Brudey K, Driscoll JR, Rigouts L, Prodinger WM, Gori A, et al. 2006. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol. 6:23
-
(2006)
BMC Microbiol.
, vol.6
, pp. 23
-
-
Brudey, K.1
Driscoll, J.R.2
Rigouts, L.3
Prodinger, W.M.4
Gori, A.5
-
21
-
-
84859142721
-
CRISPR/Cas loci of type II Propionibacterium acnes confer immunity against acquisition of mobile elements present in type i P
-
Brüggemann H, LomholtHB, Tettelin H, Kilian M. 2012. CRISPR/Cas loci of type II Propionibacterium acnes confer immunity against acquisition of mobile elements present in type I P. Acnes. PLOS ONE 7:e34171
-
(2012)
Acnes. PLOS ONE
, vol.7
, pp. e34171
-
-
Brüggemann, H.1
Lomholt, H.B.2
Tettelin, H.3
Kilian, M.4
-
22
-
-
79951505084
-
Prevalence, conservation and functional analysis of Yersinia and Escherichia CRISPR regions in clinical Pseudomonas aeruginosa isolates
-
Cady KC, White AS, Hammond JH, Abendroth MD, Karthikeyan RS, et al. 2011. Prevalence, conservation and functional analysis of Yersinia and Escherichia CRISPR regions in clinical Pseudomonas aeruginosa isolates. Microbiology 157:430-37
-
(2011)
Microbiology
, vol.157
, pp. 430-437
-
-
Cady, K.C.1
White, A.S.2
Hammond, J.H.3
Abendroth, M.D.4
Karthikeyan, R.S.5
-
23
-
-
84894063115
-
Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system
-
Chen B, Gilbert LA, Cimini BA, Schnitzbauer J, Zhang W, et al. 2013. Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system. Cell 155:1479-91
-
(2013)
Cell
, vol.155
, pp. 1479-1491
-
-
Chen, B.1
Gilbert, L.A.2
Cimini, B.A.3
Schnitzbauer, J.4
Zhang, W.5
-
24
-
-
84873729095
-
Multiplex genome engineering using CRISPR/Cas systems
-
Cong L, Ran FA, Cox D, Lin S, Barretto R, et al. 2013. Multiplex genome engineering using CRISPR/Cas systems. Science 339:819-23
-
(2013)
Science
, vol.339
, pp. 819-823
-
-
Cong, L.1
Ran, F.A.2
Cox, D.3
Lin, S.4
Barretto, R.5
-
25
-
-
50349083723
-
Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats
-
Cui Y, Li Y, Gorge O, Platonov ME, Yan Y, et al. 2008. Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats. PLOS ONE 3:e2652
-
(2008)
PLOS ONE
, vol.3
, pp. e2652
-
-
Cui, Y.1
Li, Y.2
Gorge, O.3
Platonov, M.E.4
Yan, Y.5
-
26
-
-
77952260431
-
Legionella pneumophila pangenome reveals strain-specific virulence factors
-
D'Auria G, Jimenez-Hernandez N, Peris-Bondia F, Moya A, Latorre A. 2010. Legionella pneumophila pangenome reveals strain-specific virulence factors. BMC Genomics 11:181
-
(2010)
BMC Genomics
, vol.11
, pp. 181
-
-
D'Auria, G.1
Jimenez-Hernandez, N.2
Peris-Bondia, F.3
Moya, A.4
Latorre, A.5
-
27
-
-
79953250082
-
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
-
Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, et al. 2011. CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471:602-7
-
(2011)
Nature
, vol.471
, pp. 602-607
-
-
Deltcheva, E.1
Chylinski, K.2
Sharma, C.M.3
Gonzales, K.4
Chao, Y.5
-
28
-
-
38949123143
-
Phage response to CRISPR-encoded resistance in Streptococcus thermophilus
-
DeveauH, Barrangou R, Garneau JE, Labonté J, Fremaux C, et al. 2008. Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J. Bacteriol. 190:1390-400
-
(2008)
J. Bacteriol.
, vol.190
, pp. 1390-1400
-
-
Deveau, H.1
Barrangou, R.2
Garneau, J.E.3
Labonté, J.4
Fremaux, C.5
-
30
-
-
84882428020
-
Antibiotic resistance in Salmonella Typhimurium associates with CRISPR sequence type
-
DiMarzio M, Shariat N, Kariyawasam S, Barrangou R, Dudley EG. 2013. Antibiotic resistance in Salmonella Typhimurium associates with CRISPR sequence type. Antimicrob. Agents Chemother. 9:4282-89
-
(2013)
Antimicrob. Agents Chemother.
, vol.9
, pp. 4282-4289
-
-
DiMarzio, M.1
Shariat, N.2
Kariyawasam, S.3
Barrangou, R.4
Dudley, E.G.5
-
31
-
-
84913594397
-
Genome editing the new frontier of genome engineering with CRISPRCas9
-
Doudna JA, Charpentier E. 2014. Genome editing. The new frontier of genome engineering with CRISPRCas9. Science 346:6213
-
(2014)
Science
, vol.346
, pp. 6213
-
-
Doudna, J.A.1
Charpentier, E.2
-
32
-
-
84862078522
-
CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections
-
Fabre L, Zhang J, Guigon G, Le Hello S, Guibert V, et al. 2012. CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections. PLOS ONE 7:e36995
-
(2012)
PLOS ONE
, vol.7
, pp. e36995
-
-
Fabre, L.1
Zhang, J.2
Guigon, G.3
Le Hello, S.4
Guibert, V.5
-
33
-
-
28944433798
-
Insights on biology and evolution from microbial genome sequencing
-
Fraser-Liggett CM. 2005. Insights on biology and evolution from microbial genome sequencing. Genome Res. 15:1603-10
-
(2005)
Genome Res.
, vol.15
, pp. 1603-1610
-
-
Fraser-Liggett, C.M.1
-
34
-
-
79960418330
-
Comparative genomics of 28 Salmonella enterica isolates: Evidence for CRISPR-mediated adaptive sublineage evolution
-
FrickeWF, Mammel MK, McDermott PF, Tartera C, White DG, et al. 2011. Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution. J. Bacteriol. 193:3556-68
-
(2011)
J. Bacteriol.
, vol.193
, pp. 3556-3568
-
-
Fricke, W.F.1
Mammel, M.K.2
McDermott, P.F.3
Tartera, C.4
White, D.G.5
-
35
-
-
78149261827
-
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
-
Garneau JE, Dupuis ME, Villion M, Romero DA, Barrangou R, et al. 2010. The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 468:67-71
-
(2010)
Nature
, vol.468
, pp. 67-71
-
-
Garneau, J.E.1
Dupuis, M.E.2
Villion, M.3
Romero, D.A.4
Barrangou, R.5
-
36
-
-
84866859751
-
Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
-
Gasiunas G, Barrangou R, Horvath P, Siksnys V. 2012. Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. PNAS 109:E2579-86
-
(2012)
PNAS
, vol.109
, pp. E2579-E2586
-
-
Gasiunas, G.1
Barrangou, R.2
Horvath, P.3
Siksnys, V.4
-
37
-
-
33744941078
-
The repetitive DNA elements called CRISPRs and their associated genes: Evidence of horizontal transfer among prokaryotes
-
Godde JS, Bickerton A. 2006. The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. J. Mol. Evol. 62:718-29
-
(2006)
J. Mol. Evol.
, vol.62
, pp. 718-729
-
-
Godde, J.S.1
Bickerton, A.2
-
38
-
-
84903362877
-
Programmable removal of bacterial strains by use of genome-targeting CRISPR-Cas systems
-
Gomaa AA, KlumpeHE, LuoML, Selle K, Barrangou R, Beisel CL. 2014. Programmable removal of bacterial strains by use of genome-targeting CRISPR-Cas systems. mBio 5:e00928-13
-
(2014)
MBio
, vol.5
, pp. e00928-e001013
-
-
Gomaa, A.A.1
Klumpe, H.E.2
Luo, M.L.3
Selle, K.4
Barrangou, R.5
Beisel, C.L.6
-
39
-
-
34250662138
-
TheCRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
-
Grissa I, Vergnaud G, PourcelC. 2007. TheCRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinform. 23:172
-
(2007)
BMC Bioinform.
, vol.23
, pp. 172
-
-
Grissa, I.1
Vergnaud, G.2
Pourcel, C.3
-
40
-
-
0027724480
-
Nature of DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis; Application for strain differentiation by a novel typing method
-
Groenen PM, Bunschoten AE, van SoolingenD, van Embden JD. 1993. Nature of DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis; application for strain differentiation by a novel typing method. Mol. Microbiol. 10:1057-65
-
(1993)
Mol. Microbiol.
, vol.10
, pp. 1057-1065
-
-
Groenen, P.M.1
Bunschoten, A.E.2
Van Soolingen, D.3
Van Embden, J.D.4
-
41
-
-
79955415735
-
Host specific diversity in Lactobacillus johnsonii as evidenced by a major chromosomal inversion and phage resistance mechanisms
-
Guinane C, Kent RM, Norberg S, Hill C, Fitzgerald GF, et al. 2011. Host specific diversity in Lactobacillus johnsonii as evidenced by a major chromosomal inversion and phage resistance mechanisms. PLOS ONE 6:e18740
-
(2011)
PLOS ONE
, vol.6
, pp. e18740
-
-
Guinane, C.1
Kent, R.M.2
Norberg, S.3
Hill, C.4
Fitzgerald, G.F.5
-
42
-
-
34248400310
-
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
-
Haft DH, Selengut J, MongodinEF, Nelson KE. 2005. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLOS Comput. Biol. 1:e60
-
(2005)
PLOS Comput. Biol.
, vol.1
, pp. e60
-
-
Haft, D.H.1
Selengut, J.2
Mongodin, E.F.3
Nelson, K.E.4
-
43
-
-
70449753811
-
RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
-
Hale CR, Zhao P, Olson S, Duff MO, Graveley BR, et al. 2009. RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 139:945-56
-
(2009)
Cell
, vol.139
, pp. 945-956
-
-
Hale, C.R.1
Zhao, P.2
Olson, S.3
Duff, M.O.4
Graveley, B.R.5
-
44
-
-
84908432854
-
Abundant and diverse clustered regularly interspaced short palindromic repeat spacers in Clostridium difficile strains and prophages target multiple phage types within this pathogen
-
Hargreaves KR, Flores CO, Lawley TD, Clokie MR. 2014. Abundant and diverse clustered regularly interspaced short palindromic repeat spacers in Clostridium difficile strains and prophages target multiple phage types within this pathogen. mBio 5:e01045-13
-
(2014)
MBio
, vol.5
, pp. e01045-e01113
-
-
Hargreaves, K.R.1
Flores, C.O.2
Lawley, T.D.3
Clokie, M.R.4
-
45
-
-
77957124941
-
Heterogeneous diversity of spacers within CRISPR (clustered regularly interspaced short palindromic repeats)
-
He J, Deem MW. 2010. Heterogeneous diversity of spacers within CRISPR (clustered regularly interspaced short palindromic repeats). Phys. Rev. Lett. 105:128102
-
(2010)
Phys. Rev. Lett.
, vol.105
, pp. 128102
-
-
He, J.1
Deem, M.W.2
-
46
-
-
58349087246
-
Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes
-
Heidelberg JF, Nelson WC, Schoenfeld T, Bhaya D. 2009. Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes. PLOS ONE 4:e4169
-
(2009)
PLOS ONE
, vol.4
, pp. e4169
-
-
Heidelberg, J.F.1
Nelson, W.C.2
Schoenfeld, T.3
Bhaya, D.4
-
47
-
-
77958590947
-
CRISPR associated diversity within a population of Sulfolobus islandicus
-
Held NL, Herrera A, Cadillo-QuirozH, Whitaker RJ. 2010. CRISPR associated diversity within a population of Sulfolobus islandicus. PLOS ONE 5:e12988
-
(2010)
PLOS ONE
, vol.5
, pp. e12988
-
-
Held, N.L.1
Herrera, A.2
Cadillo-Quiroz, H.3
Whitaker, R.J.4
-
48
-
-
58549120798
-
Viral biogeography revealed by signatures in Sulfolobus islandicus genomes
-
Held NL, Whitaker RJ. 2009. Viral biogeography revealed by signatures in Sulfolobus islandicus genomes. Environ. Microbiol. 11:457-66
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 457-466
-
-
Held, N.L.1
Whitaker, R.J.2
-
49
-
-
84929135130
-
Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers
-
Hilton IB, D'Ippolito AM, Vockley CM, Thakore PI, Crawford GE, et al. 2015. Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers. Nat. Biotechnol. 33:510-17
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 510-517
-
-
Hilton, I.B.1
D'Ippolito, A.M.2
Vockley, C.M.3
Thakore, P.I.4
Crawford, G.E.5
-
50
-
-
74249095519
-
CRISPR/Cas, the immune system of bacteria and archaea
-
Horvath P, Barrangou R. 2010. CRISPR/Cas, the immune system of bacteria and archaea. Science 327:167-70
-
(2010)
Science
, vol.327
, pp. 167-170
-
-
Horvath, P.1
Barrangou, R.2
-
51
-
-
64449088715
-
Comparative analysis of CRISPR loci in lactic acid bacteria genomes
-
Horvath P, Côuté-Monvoisin AC, Romero DA, Boyaval P, Fremaux C, Barrangou R. 2009. Comparative analysis of CRISPR loci in lactic acid bacteria genomes. Int. J. Food Microbiol. 131:62-70
-
(2009)
Int. J. Food Microbiol.
, vol.131
, pp. 62-70
-
-
Horvath, P.1
Côuté-Monvoisin, A.C.2
Romero, D.A.3
Boyaval, P.4
Fremaux, C.5
Barrangou, R.6
-
52
-
-
38949214103
-
Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus
-
Horvath P, Romero DA, Côuté-Monvoisin AC, Richards M, Deveau H, et al. 2008. Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus. J. Bacteriol. 190:1401-12
-
(2008)
J. Bacteriol.
, vol.190
, pp. 1401-1412
-
-
Horvath, P.1
Romero, D.A.2
Côuté-Monvoisin, A.C.3
Richards, M.4
Deveau, H.5
-
53
-
-
0023600057
-
Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product
-
Ishino Y, Shinagawa H, Makino K, Amemura M, Nakata A. 1987. Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product. J. Bacteriol. 169:5429-33
-
(1987)
J. Bacteriol.
, vol.169
, pp. 5429-5433
-
-
Ishino, Y.1
Shinagawa, H.2
Makino, K.3
Amemura, M.4
Nakata, A.5
-
54
-
-
0036267740
-
Identification of genes that are associated with DNA repeats in prokaryotes
-
Jansen R, Embden JD, GaastraW, Schouls LM. 2002a. Identification of genes that are associated with DNA repeats in prokaryotes. Mol. Microbiol. 43:1565-75
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 1565-1575
-
-
Jansen, R.1
Embden, J.D.2
Gaastra, W.3
Schouls, L.M.4
-
55
-
-
0036408356
-
Identification of a novel family of sequence repeats among prokaryotes
-
Jansen R, van Embden JD, GaastraW, Schouls LM. 2002b. Identification of a novel family of sequence repeats among prokaryotes. OMICS 6:23-33
-
(2002)
OMICS
, vol.6
, pp. 23-33
-
-
Jansen, R.1
Van Embden, J.D.2
Gaastra, W.3
Schouls, L.M.4
-
56
-
-
84874608929
-
RNA-guided editing of bacterial genomes using CRISPR-Cas systems
-
Jiang W, Bikard D, Cox D, Zhang F, Marraffini LA. 2013. RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat. Biotechnol. 31:233-39
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 233-239
-
-
Jiang, W.1
Bikard, D.2
Cox, D.3
Zhang, F.4
Marraffini, L.A.5
-
57
-
-
84865070369
-
A programmable dual-RNAguided DNA endonuclease in adaptive bacterial immunity
-
Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E. 2012. A programmable dual-RNAguided DNA endonuclease in adaptive bacterial immunity. Science 337:816-21
-
(2012)
Science
, vol.337
, pp. 816-821
-
-
Jinek, M.1
Chylinski, K.2
Fonfara, I.3
Hauer, M.4
Doudna, J.A.5
Charpentier, E.6
-
58
-
-
84872021607
-
Emergence of sequence type 779 methicillin-resistant Staphylococcus aureus harboring a novel pseudo staphylococcal cassette chromosome mec (SCCmec)-SCC-SCCCRISPR composite element in Irish hospitals
-
Kinnevey PM, Shore AC, Brennan GI, Sullivan DJ, Ehricht R, et al. 2013. Emergence of sequence type 779 methicillin-resistant Staphylococcus aureus harboring a novel pseudo staphylococcal cassette chromosome mec (SCCmec)-SCC-SCCCRISPR composite element in Irish hospitals. Antimicrob. Agents Chemother. 57:524-31
-
(2013)
Antimicrob. Agents Chemother.
, vol.57
, pp. 524-531
-
-
Kinnevey, P.M.1
Shore, A.C.2
Brennan, G.I.3
Sullivan, D.J.4
Ehricht, R.5
-
59
-
-
84902535534
-
A combination of MLST and CRISPR typing reveals dominant Campylobacter jejuni types in organically farmed laying hens
-
Kovanen SM, Kivistö RI, Rossi M, HänninenML. 2014. A combination of MLST and CRISPR typing reveals dominant Campylobacter jejuni types in organically farmed laying hens. J. Appl. Microbiol. 117:249-57
-
(2014)
J. Appl. Microbiol.
, vol.117
, pp. 249-257
-
-
Kovanen, S.M.1
Kivistö, R.I.2
Rossi, M.3
Hänninen, M.L.4
-
60
-
-
35748974534
-
Evolutionary conservation of sequence and secondary structures in CRISPR repeats
-
Kunin V, Sorek R, Hugenholtz P. 2007. Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol. 8:R61
-
(2007)
Genome Biol.
, vol.8
, pp. R61
-
-
Kunin, V.1
Sorek, R.2
Hugenholtz, P.3
-
61
-
-
84866171953
-
Intricate interactions between the bloom-forming cyanobacterium Microcystis aeruginosa and foreign genetic elements, revealed by diversified clustered regularly interspaced short palindromic repeat (CRISPR) signatures
-
Kuno S, Yoshida T, Kaneko T, Sako Y. 2012. Intricate interactions between the bloom-forming cyanobacterium Microcystis aeruginosa and foreign genetic elements, revealed by diversified clustered regularly interspaced short palindromic repeat (CRISPR) signatures. Appl. Environ. Microbiol. 78:5353-60
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 5353-5360
-
-
Kuno, S.1
Yoshida, T.2
Kaneko, T.3
Sako, Y.4
-
62
-
-
67650447476
-
Fifteen years of microbial genomics: Meeting the challenges and fulfilling the dream
-
Kyrpides NC. 2009. Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream. Nat. Biotechnol. 27:627-32
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 627-632
-
-
Kyrpides, N.C.1
-
63
-
-
84930613203
-
CRISPR, the disruptor
-
Ledford H. 2015. CRISPR, the disruptor. Nature 522:20-24
-
(2015)
Nature
, vol.522
, pp. 20-24
-
-
Ledford, H.1
-
64
-
-
84876001507
-
The population and evolutionary dynamics of phage and bacteria with CRISPR-mediated immunity
-
Levin BR, Moineau S, Bushman M, Barrangou R. 2013. The population and evolutionary dynamics of phage and bacteria with CRISPR-mediated immunity. PLOS Genet. 9:e1003312
-
(2013)
PLOS Genet.
, vol.9
, pp. e1003312
-
-
Levin, B.R.1
Moineau, S.2
Bushman, M.3
Barrangou, R.4
-
65
-
-
84940104173
-
Analysis of the type II-A CRISPR-Cas system of Streptococcus agalactiae reveals distinctive features according to genetic lineages
-
Lier C, Baticle E, Horvath P, Haguenoer E, Valentin AS, et al. 2015. Analysis of the type II-A CRISPR-Cas system of Streptococcus agalactiae reveals distinctive features according to genetic lineages. Front. Genet. 6:214
-
(2015)
Front. Genet.
, vol.6
, pp. 214
-
-
Lier, C.1
Baticle, E.2
Horvath, P.3
Haguenoer, E.4
Valentin, A.S.5
-
66
-
-
83155175251
-
Comparison of genotypic and phenotypic cluster analyses of virulence determinants and possible role of CRISPR elements towards their incidence in Enterococcus faecalis and Enterococcus faecium
-
Lindenstrauss AG, Pavlovic M, Bringmann A, Behr J, EhrmannMA, VogelRF. 2011. Comparison of genotypic and phenotypic cluster analyses of virulence determinants and possible role of CRISPR elements towards their incidence in Enterococcus faecalis and Enterococcus faecium. Syst. Appl. Microbiol. 34:553-60
-
(2011)
Syst. Appl. Microbiol.
, vol.34
, pp. 553-560
-
-
Lindenstrauss, A.G.1
Pavlovic, M.2
Bringmann, A.3
Behr, J.4
Ehrmann, M.A.5
Vogel, R.F.6
-
67
-
-
79953205601
-
Novel virulence gene and clustered regularly interspaced short palindromic repeat (CRISPR) multilocus sequence typing scheme for subtyping of the major serovars of Salmonella enterica subsp. Enterica
-
Liu F, Barrangou R, Gerner-Smidt P, Ribot EM, Knabel SJ, et al. 2011a. Novel virulence gene and clustered regularly interspaced short palindromic repeat (CRISPR) multilocus sequence typing scheme for subtyping of the major serovars of Salmonella enterica subsp. Enterica. Appl. Environ. Microbiol. 77:1946-56
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 1946-1956
-
-
Liu, F.1
Barrangou, R.2
Gerner-Smidt, P.3
Ribot, E.M.4
Knabel, S.J.5
-
68
-
-
79960084127
-
Subtyping Salmonella serovar Enteritidis isolates from different sources using sequence typing based on virulence genes and CRISPRs
-
Liu F, Kariyawasam S, Jayarao B, Barrangou R, Gerner-Smidt P, et al. 2011b. Subtyping Salmonella serovar Enteritidis isolates from different sources using sequence typing based on virulence genes and CRISPRs. App. Environ. Microbiol. 77:4520-26
-
(2011)
App. Environ. Microbiol.
, vol.77
, pp. 4520-4526
-
-
Liu, F.1
Kariyawasam, S.2
Jayarao, B.3
Barrangou, R.4
Gerner-Smidt, P.5
-
69
-
-
33750341148
-
Comparative genomics of the lactic acid bacteria
-
Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, et al. 2006a. Comparative genomics of the lactic acid bacteria. PNAS 103:15611-16
-
(2006)
PNAS
, vol.103
, pp. 15611-15616
-
-
Makarova, K.1
Slesarev, A.2
Wolf, Y.3
Sorokin, A.4
Mirkin, B.5
-
70
-
-
34248374277
-
A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
-
Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV. 2006b. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol. Direct 1:7
-
(2006)
Biol. Direct
, vol.1
, pp. 7
-
-
Makarova, K.S.1
Grishin, N.V.2
Shabalina, S.A.3
Wolf, Y.I.4
Koonin, E.V.5
-
71
-
-
79956157571
-
Evolution and classification of the CRISPR/Cas systems
-
Makarova KS, Haft DH, Barrangou R, Brouns SJ, Charpentier E, et al. 2011. Evolution and classification of the CRISPR/Cas systems. Nat. Rev. Microbiol. 9:467-77
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.4
Charpentier, E.5
-
72
-
-
84944449180
-
An updated evolutionary classification scheme for CRISPR-Cas systems
-
Makarova KS, Wolf YI, Alkhnbashi O, Costa F, Shah S, et al. 2015. An updated evolutionary classification scheme for CRISPR-Cas systems. Nat. Rev. Microbiol. 13:722-36
-
(2015)
Nat. Rev. Microbiol.
, vol.13
, pp. 722-736
-
-
Makarova, K.S.1
Wolf, Y.I.2
Alkhnbashi, O.3
Costa, F.4
Shah, S.5
-
73
-
-
84873734105
-
RNA-guided human genome engineering via Cas9
-
Mali P, Yang L, Esvelt KM, Aach J, Guell M, et al. 2013. RNA-guided human genome engineering via Cas9. Science 339:823-26
-
(2013)
Science
, vol.339
, pp. 823-826
-
-
Mali, P.1
Yang, L.2
Esvelt, K.M.3
Aach, J.4
Guell, M.5
-
74
-
-
57849137502
-
CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
-
Marraffini LA, Sontheimer EJ. 2008. CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322:1843-45
-
(2008)
Science
, vol.322
, pp. 1843-1845
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
75
-
-
57349084131
-
Genome sequence of a nephritogenic and highly transformable M49 strain of Streptococcus pyogenes
-
McShanWM, Ferretti JJ, Karasawa T, Suvorov AN, Lin S, et al. 2008. Genome sequence of a nephritogenic and highly transformable M49 strain of Streptococcus pyogenes. J. Bacteriol. 190:7773-85
-
(2008)
J. Bacteriol.
, vol.190
, pp. 7773-7785
-
-
McShan, W.M.1
Ferretti, J.J.2
Karasawa, T.3
Suvorov, A.N.4
Lin, S.5
-
77
-
-
16444385662
-
Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
-
Mojica FJ, Díez-Villaseñor C, García-Martínez J, Soria E. 2005. Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J. Mol. Evol. 60:174-82
-
(2005)
J. Mol. Evol.
, vol.60
, pp. 174-182
-
-
Mojica, F.J.1
Díez-Villaseñor, C.2
García-Martínez, J.3
Soria, E.4
-
78
-
-
34547405296
-
Corynebacterium diphtheriae spoligotyping based on combined use of two CRISPR loci
-
Mokrousov I, Limeschenko E, Vyazovaya A, Narvskaya O. 2007. Corynebacterium diphtheriae spoligotyping based on combined use of two CRISPR loci. Biotechnol. J. 2:901-6
-
(2007)
Biotechnol. J.
, vol.2
, pp. 901-906
-
-
Mokrousov, I.1
Limeschenko, E.2
Vyazovaya, A.3
Narvskaya, O.4
-
79
-
-
67349134525
-
Novel macroarraybased method of Corynebacterium diphtheriae genotyping: Evaluation in a field study in Belarus
-
Mokrousov I, Vyazovaya A, Kolodkina V, Limeschenko E, Titov L, Narvskaya O. 2009. Novel macroarraybased method of Corynebacterium diphtheriae genotyping: evaluation in a field study in Belarus. Eur. J. Clin. Microbiol. Infect. Dis. 28:701-3
-
(2009)
Eur. J. Clin. Microbiol. Infect. Dis.
, vol.28
, pp. 701-703
-
-
Mokrousov, I.1
Vyazovaya, A.2
Kolodkina, V.3
Limeschenko, E.4
Titov, L.5
Narvskaya, O.6
-
80
-
-
84924664059
-
Integrase-mediated spacer acquisition duringCRISPR-Cas adaptive immunity
-
Nuñez JK, LeeAS, Engelman A, Doudna JA. 2015. Integrase-mediated spacer acquisition duringCRISPR-Cas adaptive immunity. Nature 519:193-98
-
(2015)
Nature
, vol.519
, pp. 193-198
-
-
Nuñez, J.K.1
Lee, A.S.2
Engelman, A.3
Doudna, J.A.4
-
81
-
-
84964315717
-
CRISPR-Cas9-assisted recombineering in Lactobacillus reuteri
-
Oh JH, van Pijkeren JP. 2014. CRISPR-Cas9-assisted recombineering in Lactobacillus reuteri. Nucleic Acids Res. 42:e131
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. e131
-
-
Oh, J.H.1
Van Pijkeren, J.P.2
-
82
-
-
84874619358
-
Strong bias in the bacterial CRISPR elements that confer immunity to phage
-
Paez-Espino D, Morovic W, Sun CL, Thomas BC, Ueda K, et al. 2013. Strong bias in the bacterial CRISPR elements that confer immunity to phage. Nat. Commun. 4:1430
-
(2013)
Nat. Commun.
, vol.4
, pp. 1430
-
-
Paez-Espino, D.1
Morovic, W.2
Sun, C.L.3
Thomas, B.C.4
Ueda, K.5
-
83
-
-
84882787078
-
The CRISPR craze
-
Pennisi E. 2013. The CRISPR craze. Science 341:833-36
-
(2013)
Science
, vol.341
, pp. 833-836
-
-
Pennisi, E.1
-
84
-
-
84899091748
-
The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. Enterica
-
Pettengill JB, Timme RE, Barrangou R, Toro M, Allard MW, et al. 2014. The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. Enterica. Peer J. 2:e340
-
(2014)
Peer J.
, vol.2
, pp. e340
-
-
Pettengill, J.B.1
Timme, R.E.2
Barrangou, R.3
Toro, M.4
Allard, M.W.5
-
85
-
-
15844390228
-
CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
-
Pourcel C, Salvignol G, Vergnaud G. 2005. CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 151:653-63
-
(2005)
Microbiology
, vol.151
, pp. 653-663
-
-
Pourcel, C.1
Salvignol, G.2
Vergnaud, G.3
-
86
-
-
78651482834
-
Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time
-
Pride DT, Sun CL, Salzman J, RaoN, Loomer P, et al. 2011. Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. Genome Res. 21:126-36
-
(2011)
Genome Res.
, vol.21
, pp. 126-136
-
-
Pride, D.T.1
Sun, C.L.2
Salzman, J.3
Rao, N.4
Loomer, P.5
-
87
-
-
84874687019
-
Repurposing CRISPR as an RNAguided platform for sequence-specific control of gene expression
-
Qi LS, Larson MH, Gilbert LA, Doudna JA, Weissman JS, et al. 2013. Repurposing CRISPR as an RNAguided platform for sequence-specific control of gene expression. Cell 152:1173-83
-
(2013)
Cell
, vol.152
, pp. 1173-1183
-
-
Qi, L.S.1
Larson, M.H.2
Gilbert, L.A.3
Doudna, J.A.4
Weissman, J.S.5
-
88
-
-
79960859891
-
Microbial genomics and infectious diseases
-
Relman DA. 2011. Microbial genomics and infectious diseases. N. Engl. J. Med. 365:347-57
-
(2011)
N. Engl. J. Med.
, vol.365
, pp. 347-357
-
-
Relman, D.A.1
-
89
-
-
79958285933
-
Diversity, evolution and functionality of clustered regularly interspaced short palindromic repeat (CRISPR) regions in the fire blight pathogen Erwinia amylovora
-
Rezzonico F, Smits THM, Duffy B. 2011. Diversity, evolution and functionality of clustered regularly interspaced short palindromic repeat (CRISPR) regions in the fire blight pathogen Erwinia amylovora. Appl. Environ. Microbiol. 77:3819-29
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 3819-3829
-
-
Rezzonico, F.1
Smits, T.H.M.2
Duffy, B.3
-
90
-
-
84857188832
-
Yersinia pestis lineages in Mongolia
-
Riehm JM, Vergnaud G, Kiefer D, Damdindorj T, Dashdavaa O, et al. 2012. Yersinia pestis lineages in Mongolia. PLOS ONE 7:e30624
-
(2012)
PLOS ONE
, vol.7
, pp. e30624
-
-
Riehm, J.M.1
Vergnaud, G.2
Kiefer, D.3
Damdindorj, T.4
Dashdavaa, O.5
-
91
-
-
84925876620
-
Harnessing CRISPR-Cas systems for bacterial genome editing
-
Selle K, Barrangou R. 2015. Harnessing CRISPR-Cas systems for bacterial genome editing. Trends Microbiol. 23:225-32
-
(2015)
Trends Microbiol.
, vol.23
, pp. 225-232
-
-
Selle, K.1
Barrangou, R.2
-
92
-
-
84937886246
-
CRISPR-based screening of genomic island excision events in bacteria
-
Selle K, Klaenhammer TR, Barrangou R. 2015. CRISPR-based screening of genomic island excision events in bacteria. PNAS 112:8076-81
-
(2015)
PNAS
, vol.112
, pp. 8076-8081
-
-
Selle, K.1
Klaenhammer, T.R.2
Barrangou, R.3
-
93
-
-
67149084593
-
Analysis of CRISPR system function in plant pathogen Xanthomonas oryzae
-
Semenova E, Nagornykh M, Pyatnitskiy M, Artamonova, II, Severinov K. 2009. Analysis of CRISPR system function in plant pathogen Xanthomonas oryzae. FEMS Microbiol. Lett. 296:110-16
-
(2009)
FEMS Microbiol. Lett.
, vol.296
, pp. 110-116
-
-
Semenova, E.1
Nagornykh, M.2
Pyatnitskiy, M.3
Artamonova, I.I.4
Severinov, K.5
-
94
-
-
84892765883
-
Genome-scale CRISPR-Cas9 knockout screening in human cells
-
Shalem O, Sanjana NE, Hartenian E, Shi X, Scott DA, et al. 2014. Genome-scale CRISPR-Cas9 knockout screening in human cells. Science 343:84-87
-
(2014)
Science
, vol.343
, pp. 84-87
-
-
Shalem, O.1
Sanjana, N.E.2
Hartenian, E.3
Shi, X.4
Scott, D.A.5
-
95
-
-
84872243390
-
The combination of CRISPRMVLST and PFGE provides increased discriminatory power for differentiating human clinical isolates of Salmonella enterica subsp. Enterica serovar Enteritidis
-
Shariat N, DiMarzio MJ, Yin S, Dettinger L, Sandt CH, et al. 2013a. The combination of CRISPRMVLST and PFGE provides increased discriminatory power for differentiating human clinical isolates of Salmonella enterica subsp. Enterica serovar Enteritidis. Food Microbiol. 34:164-73
-
(2013)
Food Microbiol.
, vol.34
, pp. 164-173
-
-
Shariat, N.1
DiMarzio, M.J.2
Yin, S.3
Dettinger, L.4
Sandt, C.H.5
-
96
-
-
84892453591
-
CRISPRs: Molecular signatures used for pathogen subtyping
-
Shariat N, Dudley EG. 2014. CRISPRs: molecular signatures used for pathogen subtyping. Appl. Environ. Microbiol. 80:430-39
-
(2014)
Appl. Environ. Microbiol.
, vol.80
, pp. 430-439
-
-
Shariat, N.1
Dudley, E.G.2
-
97
-
-
84879442753
-
Subtyping of Salmonella enterica serovar Newport outbreak isolates by CRISPR-MVLST and determination of the relationship between CRISPR-MVLST and PFGE results
-
Shariat N, Kirchner MK, Sandt CH, Trees E, Barrangou R, Dudley EG. 2013b. Subtyping of Salmonella enterica serovar Newport outbreak isolates by CRISPR-MVLST and determination of the relationship between CRISPR-MVLST and PFGE results. J. Clin. Microbiol. 51:2328-36
-
(2013)
J. Clin. Microbiol.
, vol.51
, pp. 2328-2336
-
-
Shariat, N.1
Kirchner, M.K.2
Sandt, C.H.3
Trees, E.4
Barrangou, R.5
Dudley, E.G.6
-
98
-
-
84887279490
-
CRISPR-MVLST subtyping of Salmonella enterica subsp. Enterica serovars Typhimurium and Heidelberg and application in identifying outbreak isolates
-
Shariat N, Sandt CH, DiMarzio MJ, Barrangou R, Dudley EG. 2013c. CRISPR-MVLST subtyping of Salmonella enterica subsp. Enterica serovars Typhimurium and Heidelberg and application in identifying outbreak isolates. BMC Microbiol. 13:254
-
(2013)
BMC Microbiol.
, vol.13
, pp. 254
-
-
Shariat, N.1
Sandt, C.H.2
DiMarzio, M.J.3
Barrangou, R.4
Dudley, E.G.5
-
99
-
-
84944176468
-
Characterization and evolution of Salmonella CRISPR-Cas systems
-
Shariat N, Timme RE, Pettengill JB, Barrangou R, Dudley E. 2014. Characterization and evolution of Salmonella CRISPR-Cas systems. Microbiology 161:374-86
-
(2014)
Microbiology
, vol.161
, pp. 374-386
-
-
Shariat, N.1
Timme, R.E.2
Pettengill, J.B.3
Barrangou, R.4
Dudley, E.5
-
100
-
-
84937558548
-
The bacterial origins of the CRISPR genome editing revolution
-
Sontheimer E, Barrangou R. 2015. The bacterial origins of the CRISPR genome editing revolution. Hum. Gene Ther. 26:413-24
-
(2015)
Hum. Gene Ther.
, vol.26
, pp. 413-424
-
-
Sontheimer, E.1
Barrangou, R.2
-
101
-
-
84873129118
-
Phage mutations in response to CRISPR diversification in a bacterial population
-
Sun CL, Barrangou R, Thomas BC, Horvath P, Fremaux C, Banfield JF. 2013. Phage mutations in response to CRISPR diversification in a bacterial population. Environ. Microbiol. 15:463-70
-
(2013)
Environ. Microbiol.
, vol.15
, pp. 463-470
-
-
Sun, C.L.1
Barrangou, R.2
Thomas, B.C.3
Horvath, P.4
Fremaux, C.5
Banfield, J.F.6
-
102
-
-
84921277835
-
Association ofCRISPR/Cas evolution with Vibrio parahaemolyticus virulence factors and genotypes
-
SunH, Li Y, Shi X, Lin Y, Qiu Y, et al. 2015. Association ofCRISPR/Cas evolution with Vibrio parahaemolyticus virulence factors and genotypes. Foodborne Pathog. Dis. 12:68-73
-
(2015)
Foodborne Pathog. Dis.
, vol.12
, pp. 68-73
-
-
Sun, H.1
Li, Y.2
Shi, X.3
Lin, Y.4
Qiu, Y.5
-
103
-
-
84892665620
-
Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. Enterica inferred from genome-wide reference-free SNP characters
-
Timme RE, Pettengill JB, AllardMW, Strain E, Barrangou R, et al. 2013. Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. Enterica inferred from genome-wide reference-free SNP characters. Genome Biol. Evol. 5:2109-23
-
(2013)
Genome Biol. Evol.
, vol.5
, pp. 2109-2123
-
-
Timme, R.E.1
Pettengill, J.B.2
Allard, M.W.3
Strain, E.4
Barrangou, R.5
-
104
-
-
84893415098
-
Association of clustered regularly interspaced short palindromic repeat (CRISPR) elements with specific serotypes and virulence potential of Shiga toxin-producing Escherichia coli
-
Toro M, Cao G, Ju W, Allard M, Barrangou R, et al. 2014. Association of clustered regularly interspaced short palindromic repeat (CRISPR) elements with specific serotypes and virulence potential of shiga toxin-producing Escherichia coli. Appl. Environ. Microbiol. 80:1411-20
-
(2014)
Appl. Environ. Microbiol.
, vol.80
, pp. 1411-1420
-
-
Toro, M.1
Cao, G.2
Ju, W.3
Allard, M.4
Barrangou, R.5
-
105
-
-
79956154321
-
CRISPR distribution within the Escherichia coli species is not suggestive of immunity-associated diversifying selection
-
Touchon M, Charpentier S, Clermont O, Rocha EPC, Denamur E, Branger C. 2011. CRISPR distribution within the Escherichia coli species is not suggestive of immunity-associated diversifying selection. J. Bacteriol. 193:2460-67
-
(2011)
J. Bacteriol.
, vol.193
, pp. 2460-2467
-
-
Touchon, M.1
Charpentier, S.2
Clermont, O.3
Rocha, E.P.C.4
Denamur, E.5
Branger, C.6
-
106
-
-
77956213914
-
The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella
-
Touchon M, Rocha EP. 2010. The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella. PLOS ONE 5:e11126
-
(2010)
PLOS ONE
, vol.5
, pp. e11126
-
-
Touchon, M.1
Rocha, E.P.2
-
107
-
-
84884244608
-
Characterization of hospital-associated lineages of ampicillin-resistant Enterococcus faecium from clinical cases in dogs and humans
-
Tremblay CL, CharleboisA, MassonL, Archambault M. 2013. Characterization of hospital-associated lineages of ampicillin-resistant Enterococcus faecium from clinical cases in dogs and humans. Front. Microbiol. 4:245
-
(2013)
Front. Microbiol.
, vol.4
, pp. 245
-
-
Tremblay, C.L.1
Charlebois, A.2
Masson, L.3
Archambault, M.4
-
108
-
-
38149061877
-
Rapidly evolvingCRISPRs implicated in acquired resistance ofmicroorganisms to viruses
-
TysonGW, Banfield JF. 2008. Rapidly evolvingCRISPRs implicated in acquired resistance ofmicroorganisms to viruses. Environ. Microbiol. 10:200-7
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 200-207
-
-
Tyson, G.W.1
Banfield, J.F.2
-
109
-
-
70350495673
-
Comparative analyses of prophagelike elements present in bifidobacterial genomes
-
VenturaM, Turroni F, Lima-Mendez G, Foroni E, Zomer A, et al. 2009. Comparative analyses of prophagelike elements present in bifidobacterial genomes. Appl. Environ. Microbiol. 75:6929-36
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 6929-6936
-
-
Ventura, M.1
Turroni, F.2
Lima-Mendez, G.3
Foroni, E.4
Zomer, A.5
-
110
-
-
84939152282
-
Prevalence and spacial distribution of Salmonella infections in the Pennsylvania common raccoon (Procyon lotor)
-
Very KJ, Kirchner MF, Shariat N, Cottrell W, Sandt CH, et al. 2015. Prevalence and spacial distribution of Salmonella infections in the Pennsylvania common raccoon (Procyon lotor). Zoonoses Pub. Health doi: 10. 1111/zph. 12222
-
(2015)
Zoonoses Pub. Health
-
-
Very, K.J.1
Kirchner, M.F.2
Shariat, N.3
Cottrell, W.4
Sandt, C.H.5
-
111
-
-
84908021528
-
Determination of Salmonella clustered regularly interspaced short palindromic repeats (CRISPR) diversity on dairy farms in Wisconsin and Minnesota
-
Wehnes CA, Rehberger TG, Barrangou R, Smith AH. 2014. Determination of Salmonella clustered regularly interspaced short palindromic repeats (CRISPR) diversity on dairy farms in Wisconsin and Minnesota. J. Dairy Sci. 97:6370-77
-
(2014)
J. Dairy Sci.
, vol.97
, pp. 6370-6377
-
-
Wehnes, C.A.1
Rehberger, T.G.2
Barrangou, R.3
Smith, A.H.4
-
112
-
-
84861117236
-
Persisting viral sequences shape microbial CRISPR-based immunity
-
Weinberger AD, Sun CL, Plucínski MM, Denef VJ, Thomas BC, et al. 2012. Persisting viral sequences shape microbial CRISPR-based immunity. PLOS Comput. Biol. 8:e1002475
-
(2012)
PLOS Comput. Biol.
, vol.8
, pp. e1002475
-
-
Weinberger, A.D.1
Sun, C.L.2
Plucínski, M.M.3
Denef, V.J.4
Thomas, B.C.5
-
113
-
-
84884263150
-
The evolutionary divergence of Shiga toxin-producing Escherichia coli is reflected in clustered regularly interspaced short palindromic repeat (CRISPR) spacer composition
-
Yin S, Jensen MA, Bai J, Debroy C, Barrangou R, Dudley EG. 2013. The evolutionary divergence of shiga toxin-producing Escherichia coli is reflected in clustered regularly interspaced short palindromic repeat (CRISPR) spacer composition. Appl. Environ. Microbiol. 79:5710-20
-
(2013)
Appl. Environ. Microbiol.
, vol.79
, pp. 5710-5720
-
-
Yin, S.1
Jensen, M.A.2
Bai, J.3
Debroy, C.4
Barrangou, R.5
Dudley, E.G.6
-
114
-
-
76649135130
-
Mycobacterium tuberculosis complex CRISPR genotyping: Improving efficiency, throughput and discriminative power of "spoligotyping" with new spacers and a microbead-based hybridization assay
-
Zhang J, Abadia E, Refregier G, Tafaj S, Boschiroli ML, et al. 2010. Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of "spoligotyping" with new spacers and a microbead-based hybridization assay. J. Med. Microbiol. 59:285-94
-
(2010)
J. Med. Microbiol.
, vol.59
, pp. 285-294
-
-
Zhang, J.1
Abadia, E.2
Refregier, G.3
Tafaj, S.4
Boschiroli, M.L.5
|