메뉴 건너뛰기




Volumn 122, Issue 14, 2018, Pages 3760-3770

Modeling Protein S-Aromatic Motifs Reveals Their Structural and Redox Flexibility

Author keywords

[No Author keywords available]

Indexed keywords

AROMATIZATION; ATOMS; CHARGE TRANSFER; GASES; IONIZATION OF GASES; IONIZATION POTENTIAL; LIGANDS; MOLECULAR DYNAMICS; PHENOLS; PLANTS (BOTANY); POLYCYCLIC AROMATIC HYDROCARBONS; PROTEINS;

EID: 85045460282     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/acs.jpcb.8b00089     Document Type: Article
Times cited : (21)

References (85)
  • 1
    • 0033950182 scopus 로고    scopus 로고
    • Evidence for a Strong Sulfur-Aromatic Interaction Derived from Crystallographic Data
    • Zauhar, R. J.; Colbert, C. L.; Morgan, R. S.; Welsh, W. J. Evidence for a Strong Sulfur-Aromatic Interaction Derived from Crystallographic Data. Biopolymers 2000, 53, 233-248, 10.1002/(sici)1097-0282(200003)53:3<233::aid-bip3>3.0.co;2-4
    • (2000) Biopolymers , vol.53 , pp. 233-248
    • Zauhar, R.J.1    Colbert, C.L.2    Morgan, R.S.3    Welsh, W.J.4
  • 2
    • 64549109361 scopus 로고    scopus 로고
    • Intermolecular S···π interactions in Crystalline Sulfanyl-Triazine Derivatives
    • Wan, C.-Q.; Han, J.; Mak, T. C. W. Intermolecular S···π interactions in Crystalline Sulfanyl-Triazine Derivatives. New J. Chem. 2009, 33, 707-712, 10.1039/b818344a
    • (2009) New J. Chem. , vol.33 , pp. 707-712
    • Wan, C.-Q.1    Han, J.2    Mak, T.C.W.3
  • 3
    • 84946213367 scopus 로고    scopus 로고
    • Attractive S···π and π-π Interactions in the Pyrazine-2-Thiocarboxamide Structure: Experimental and Computational Studies in the Context of Crystal Engineering and Microbiological Properties
    • Chylewska, A.; Sikorski, A.; Ogryzek, M.; Makowski, M. Attractive S···π and π-π Interactions in the Pyrazine-2-Thiocarboxamide Structure: Experimental and Computational Studies in the Context of Crystal Engineering and Microbiological Properties. J. Mol. Struct. 2016, 1105, 96-104, 10.1016/j.molstruc.2015.10.032
    • (2016) J. Mol. Struct. , vol.1105 , pp. 96-104
    • Chylewska, A.1    Sikorski, A.2    Ogryzek, M.3    Makowski, M.4
  • 4
    • 0017799801 scopus 로고
    • A Survey of Atomic Interactions in 21 Proteins
    • Warme, P. K.; Morgan, R. S. A Survey of Atomic Interactions in 21 Proteins. J. Mol. Biol. 1978, 118, 273-287, 10.1016/0022-2836(78)90228-0
    • (1978) J. Mol. Biol. , vol.118 , pp. 273-287
    • Warme, P.K.1    Morgan, R.S.2
  • 5
    • 0017872911 scopus 로고
    • A Survey of Amino Acid Side-Chain Interactions in 21 Proteins
    • Warme, P. K.; Morgan, R. S. A Survey of Amino Acid Side-Chain Interactions in 21 Proteins. J. Mol. Biol. 1978, 118, 289-304, 10.1016/0022-2836(78)90229-2
    • (1978) J. Mol. Biol. , vol.118 , pp. 289-304
    • Warme, P.K.1    Morgan, R.S.2
  • 6
    • 0000059250 scopus 로고
    • Sulphur-Aromatic Interactions in Proteins
    • Reid, K. S. C.; Lindley, P. F.; Thornton, J. M. Sulphur-Aromatic Interactions in Proteins. FEBS Lett. 1985, 190, 209-213, 10.1016/0014-5793(85)81285-0
    • (1985) FEBS Lett. , vol.190 , pp. 209-213
    • Reid, K.S.C.1    Lindley, P.F.2    Thornton, J.M.3
  • 7
    • 0031862793 scopus 로고    scopus 로고
    • Different Types of Interactions Involving Cysteine Sulfhydryl Group in Proteins
    • Pal, D.; Chakrabarti, P. Different Types of Interactions Involving Cysteine Sulfhydryl Group in Proteins. J. Biomol. Struct. Dyn. 1998, 15, 1059-1072, 10.1080/07391102.1998.10509001
    • (1998) J. Biomol. Struct. Dyn. , vol.15 , pp. 1059-1072
    • Pal, D.1    Chakrabarti, P.2
  • 8
    • 0032815051 scopus 로고    scopus 로고
    • Conservation of Cys-Cys Trp Structural Triads and Their Geometry in the Protein Domains of Immunoglobulin Superfamily Members
    • Ioerger, T. R.; Du, C.; Linthicum, D. S. Conservation of Cys-Cys Trp Structural Triads and Their Geometry in the Protein Domains of Immunoglobulin Superfamily Members. Mol. Immunol. 1999, 36, 373-386, 10.1016/s0161-5890(99)00032-2
    • (1999) Mol. Immunol. , vol.36 , pp. 373-386
    • Ioerger, T.R.1    Du, C.2    Linthicum, D.S.3
  • 9
    • 0034846083 scopus 로고    scopus 로고
    • Non-Hydrogen Bond Interactions Involving the Methionine Sulfur Atom
    • Pal, D.; Chakrabarti, P. Non-Hydrogen Bond Interactions Involving the Methionine Sulfur Atom. J. Biomol. Struct. Dyn. 2001, 19, 115-128, 10.1080/07391102.2001.10506725
    • (2001) J. Biomol. Struct. Dyn. , vol.19 , pp. 115-128
    • Pal, D.1    Chakrabarti, P.2
  • 10
    • 0035841343 scopus 로고    scopus 로고
    • Characterization of Aromatic-Thiol π-Type Hydrogen Bonding and Phenylalanine-Cysteine Side Chain Interactions Through Ab Initio Calculations and Protein Database Analyses
    • Duan, G.; Smith, V. H., Jr.; Weaver, D. F. Characterization of Aromatic-Thiol π-Type Hydrogen Bonding and Phenylalanine-Cysteine Side Chain Interactions Through Ab Initio Calculations and Protein Database Analyses. Mol. Phys. 2001, 99, 1689-1699, 10.1080/00268970110063917
    • (2001) Mol. Phys. , vol.99 , pp. 1689-1699
    • Duan, G.1    Smith, V.H.2    Weaver, D.F.3
  • 11
    • 0036325843 scopus 로고    scopus 로고
    • Weak Nonbonded S···X (X = O, N, and S) Interactions in Proteins. Statistical and Theoretical Studies
    • Iwaoka, M.; Takemoto, S.; Okada, M.; Tomoda, S. Weak Nonbonded S···X (X = O, N, and S) Interactions in Proteins. Statistical and Theoretical Studies. Bull. Chem. Soc. Jpn. 2002, 75, 1611-1625, 10.1246/bcsj.75.1611
    • (2002) Bull. Chem. Soc. Jpn. , vol.75 , pp. 1611-1625
    • Iwaoka, M.1    Takemoto, S.2    Okada, M.3    Tomoda, S.4
  • 13
    • 84867427213 scopus 로고    scopus 로고
    • The Methionine-Aromatic Motif Plays a Unique Role in Stabilizing Protein Structure
    • Valley, C. C.; Cembran, A.; Perlmutter, J. D.; Lewis, A. K.; Labello, N. P.; Gao, J.; Sachs, J. N. The Methionine-Aromatic Motif Plays a Unique Role in Stabilizing Protein Structure. J. Biol. Chem. 2012, 287, 34979-34991, 10.1074/jbc.m112.374504
    • (2012) J. Biol. Chem. , vol.287 , pp. 34979-34991
    • Valley, C.C.1    Cembran, A.2    Perlmutter, J.D.3    Lewis, A.K.4    Labello, N.P.5    Gao, J.6    Sachs, J.N.7
  • 14
    • 84878558448 scopus 로고    scopus 로고
    • Sulfur-Containing Amino Acids in 7TMRs: Molecular Gears for Pharmacology and Function
    • Cordomí, A.; Gómez-Tamayo, J. C.; Gigoux, V.; Fourmy, D. Sulfur-Containing Amino Acids in 7TMRs: Molecular Gears for Pharmacology and Function. Trends Pharmacol. Sci. 2013, 34, 320-331, 10.1016/j.tips.2013.03.008
    • (2013) Trends Pharmacol. Sci. , vol.34 , pp. 320-331
    • Cordomí, A.1    Gómez-Tamayo, J.C.2    Gigoux, V.3    Fourmy, D.4
  • 15
    • 0029034436 scopus 로고
    • Side-Chain Interactions between Sulfur-Containing Amino Acids and Phenyalanine in α-Helices
    • Viguera, A. R.; Serrano, L. Side-Chain Interactions between Sulfur-Containing Amino Acids and Phenyalanine in α-Helices. Biochemistry 1995, 34, 8771-8779, 10.1021/bi00027a028
    • (1995) Biochemistry , vol.34 , pp. 8771-8779
    • Viguera, A.R.1    Serrano, L.2
  • 16
    • 0028822255 scopus 로고
    • Addition of Side Chain Interactions to Modified Lifson-Roig Helix-Coil Theory: Application to Energetics of Phenylalanine-Methionine Interactions
    • Stapley, B. J.; Rohl, C. A.; Doig, A. J. Addition of Side Chain Interactions to Modified Lifson-Roig Helix-Coil Theory: Application to Energetics of Phenylalanine-Methionine Interactions. Protein Sci. 1995, 4, 2383-2391, 10.1002/pro.5560041117
    • (1995) Protein Sci. , vol.4 , pp. 2383-2391
    • Stapley, B.J.1    Rohl, C.A.2    Doig, A.J.3
  • 17
    • 4344673535 scopus 로고    scopus 로고
    • Investigation of the Nature of the Methionine-π Interaction in β-Hairpin Peptide Model Systems
    • Tatko, C. D.; Waters, M. L. Investigation of the Nature of the Methionine-π Interaction in β-Hairpin Peptide Model Systems. Protein Sci. 2004, 13, 2515-2522, 10.1110/ps.04820104
    • (2004) Protein Sci. , vol.13 , pp. 2515-2522
    • Tatko, C.D.1    Waters, M.L.2
  • 18
    • 84982233493 scopus 로고    scopus 로고
    • Sulfur-Aromatic Interactions: Modeling Cysteine and Methionine Binding to Tyrosinate and Histidinium Ions to Assess Their Influence on Protein Electron Transfer
    • Orabi, E. A.; English, A. M. Sulfur-Aromatic Interactions: Modeling Cysteine and Methionine Binding to Tyrosinate and Histidinium Ions to Assess Their Influence on Protein Electron Transfer. Isr. J. Chem. 2016, 56, 872-885, 10.1002/ijch.201600047
    • (2016) Isr. J. Chem. , vol.56 , pp. 872-885
    • Orabi, E.A.1    English, A.M.2
  • 19
    • 84865723813 scopus 로고    scopus 로고
    • Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone Φ, ψ and Side-Chain χ(1) and χ(2) Dihedral Angles
    • Best, R. B.; Zhu, X.; Shim, J.; Lopes, P. E. M.; Mittal, J.; Feig, M.; Mackerell, A. D., Jr. Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone Φ, ψ and Side-Chain χ(1) and χ(2) Dihedral Angles. J. Chem. Theory Comput. 2012, 8, 3257-3273, 10.1021/ct300400x
    • (2012) J. Chem. Theory Comput. , vol.8 , pp. 3257-3273
    • Best, R.B.1    Zhu, X.2    Shim, J.3    Lopes, P.E.M.4    Mittal, J.5    Feig, M.6    Mackerell, A.D.7
  • 20
    • 0017861813 scopus 로고
    • Chains of Alternating Sulfur and π-Bonded Atoms in Eight Small Proteins
    • Morgan, R. S.; Tatsch, C. E.; Gushard, R. H.; Mcadon, J. M.; Warme, P. K. Chains of Alternating Sulfur and π-Bonded Atoms in Eight Small Proteins. Int. J. Pept. Protein Res. 1978, 11, 209-217, 10.1111/j.1399-3011.1978.tb02841.x
    • (1978) Int. J. Pept. Protein Res. , vol.11 , pp. 209-217
    • Morgan, R.S.1    Tatsch, C.E.2    Gushard, R.H.3    McAdon, J.M.4    Warme, P.K.5
  • 21
    • 0032493389 scopus 로고    scopus 로고
    • Role of Methionine 56 in the Control of the Oxidation-Reduction Potentials of the Clostridium Beijerinckii Flavodoxin: Effects of Substitutions by Aliphatic Amino Acids and Evidence for a Role of Sulfur-Flavin Interactions
    • Druhan, L. J.; Swenson, R. P. Role of Methionine 56 in the Control of the Oxidation-Reduction Potentials of the Clostridium Beijerinckii Flavodoxin: Effects of Substitutions by Aliphatic Amino Acids and Evidence for a Role of Sulfur-Flavin Interactions. Biochemistry 1998, 37, 9668-9678, 10.1021/bi980770b
    • (1998) Biochemistry , vol.37 , pp. 9668-9678
    • Druhan, L.J.1    Swenson, R.P.2
  • 22
    • 0035846563 scopus 로고    scopus 로고
    • The Role of Redox-Active Amino Acids on Compound i Stability, Substrate Oxidation, and Protein Cross-Linking in Yeast Cytochrome c Peroxidase
    • Pfister, T. D.; Gengenbach, A. J.; Syn, S.; Lu, Y. The Role of Redox-Active Amino Acids on Compound I Stability, Substrate Oxidation, and Protein Cross-Linking in Yeast Cytochrome c Peroxidase. Biochemistry 2001, 40, 14942-14951, 10.1021/bi011400h
    • (2001) Biochemistry , vol.40 , pp. 14942-14951
    • Pfister, T.D.1    Gengenbach, A.J.2    Syn, S.3    Lu, Y.4
  • 24
    • 70349952257 scopus 로고    scopus 로고
    • Electron Transfer in Peptides with Cysteine and Methionine as Relay Amino Acids
    • Wang, M.; Gao, J.; Müller, P.; Giese, B. Electron Transfer in Peptides with Cysteine and Methionine as Relay Amino Acids. Angew. Chem., Int. Ed. 2009, 48, 4232-4234, 10.1002/anie.200900827
    • (2009) Angew. Chem., Int. Ed. , vol.48 , pp. 4232-4234
    • Wang, M.1    Gao, J.2    Müller, P.3    Giese, B.4
  • 25
    • 78650581853 scopus 로고    scopus 로고
    • Proton-Coupled Electron Flow in Protein Redox Machines
    • Dempsey, J. L.; Winkler, J. R.; Gray, H. B. Proton-Coupled Electron Flow in Protein Redox Machines. Chem. Rev. 2010, 110, 7024-7039, 10.1021/cr100182b
    • (2010) Chem. Rev. , vol.110 , pp. 7024-7039
    • Dempsey, J.L.1    Winkler, J.R.2    Gray, H.B.3
  • 27
    • 84940995096 scopus 로고    scopus 로고
    • Hole Hopping Through Tyrosine/Tryptophan Chains Protects Proteins from Oxidative Damage
    • Gray, H. B.; Winkler, J. R. Hole Hopping Through Tyrosine/Tryptophan Chains Protects Proteins from Oxidative Damage. Proc. Natl. Acad. Sci. U.S.A. 2015, 112, 10920-10925, 10.1073/pnas.1512704112
    • (2015) Proc. Natl. Acad. Sci. U.S.A. , vol.112 , pp. 10920-10925
    • Gray, H.B.1    Winkler, J.R.2
  • 29
    • 77950145038 scopus 로고    scopus 로고
    • Anodic oxidation of m-Terphenyl Thio-, Seleno- and Telluroethers: Lowered Oxidation Potentials Due to Chalcogen···π Interaction
    • Ammam, M.; Zakai, U. I.; Wilson, G. S.; Glass, R. S. Anodic oxidation of m-Terphenyl Thio-, Seleno- and Telluroethers: Lowered Oxidation Potentials Due to Chalcogen···π Interaction. Pure Appl. Chem. 2010, 82, 555-563, 10.1351/pac-con-09-08-10
    • (2010) Pure Appl. Chem. , vol.82 , pp. 555-563
    • Ammam, M.1    Zakai, U.I.2    Wilson, G.S.3    Glass, R.S.4
  • 30
    • 84885144890 scopus 로고    scopus 로고
    • Spectroscopic Evidence for a New Type of Bonding between a Thioether Radical Cation and a Phenyl Group
    • Monney, N. P.-A.; Bally, T.; Bhagavathy, G. S.; Glass, R. S. Spectroscopic Evidence for a New Type of Bonding between a Thioether Radical Cation and a Phenyl Group. Org. Lett. 2013, 15, 4932-4935, 10.1021/ol402126f
    • (2013) Org. Lett. , vol.15 , pp. 4932-4935
    • Monney, N.P.-A.1    Bally, T.2    Bhagavathy, G.S.3    Glass, R.S.4
  • 31
    • 84948128221 scopus 로고    scopus 로고
    • Sulphur Atoms from Methionines Interacting with Aromatic Residues Are Less Prone to Oxidation
    • Aledo, J. C.; Cantón, F. R.; Veredas, F. J. Sulphur Atoms from Methionines Interacting with Aromatic Residues Are Less Prone to Oxidation. Sci. Rep. 2015, 5, 16955, 10.1038/srep16955
    • (2015) Sci. Rep. , vol.5 , pp. 16955
    • Aledo, J.C.1    Cantón, F.R.2    Veredas, F.J.3
  • 32
    • 0842341771 scopus 로고
    • Development and Use of Quantum Mechanical Molecular Models. 76. AM1: A New General Purpose Quantum Mechanical Molecular Model
    • Dewar, M. J. S.; Zoebisch, E. G.; Healy, E. F.; Stewart, J. J. P. Development and Use of Quantum Mechanical Molecular Models. 76. AM1: A New General Purpose Quantum Mechanical Molecular Model. J. Am. Chem. Soc. 1985, 107, 3902-3909, 10.1021/ja00299a024
    • (1985) J. Am. Chem. Soc. , vol.107 , pp. 3902-3909
    • Dewar, M.J.S.1    Zoebisch, E.G.2    Healy, E.F.3    Stewart, J.J.P.4
  • 33
    • 84988129057 scopus 로고
    • Optimization of Parameters for Semiempirical Methods I. Methods
    • Stewart, J. J. P. Optimization of Parameters for Semiempirical Methods I. Methods. J. Comput. Chem. 1989, 10, 209-220, 10.1002/jcc.540100208
    • (1989) J. Comput. Chem. , vol.10 , pp. 209-220
    • Stewart, J.J.P.1
  • 34
    • 35948970643 scopus 로고    scopus 로고
    • Density Functional and Semiempirical Molecular Orbital Methods Including Dispersion Corrections for the Accurate Description of Noncovalent Interactions Involving Sulfur-Containing Molecules
    • Morgado, C. A.; McNamara, J. P.; Hillier, I. H.; Burton, N. A.; Vincent, M. A. Density Functional and Semiempirical Molecular Orbital Methods Including Dispersion Corrections for the Accurate Description of Noncovalent Interactions Involving Sulfur-Containing Molecules. J. Chem. Theory Comput. 2007, 3, 1656-1664, 10.1021/ct700072a
    • (2007) J. Chem. Theory Comput. , vol.3 , pp. 1656-1664
    • Morgado, C.A.1    McNamara, J.P.2    Hillier, I.H.3    Burton, N.A.4    Vincent, M.A.5
  • 36
    • 84890021933 scopus 로고
    • The Calculation of Small Molecular Interactions by the Differences of Separate Total Energies. Some Procedures with Reduced Errors
    • Boys, S. F.; Bernardi, F. The Calculation of Small Molecular Interactions by the Differences of Separate Total Energies. Some Procedures with Reduced Errors. Mol. Phys. 1970, 19, 553-566, 10.1080/00268977000101561
    • (1970) Mol. Phys. , vol.19 , pp. 553-566
    • Boys, S.F.1    Bernardi, F.2
  • 38
    • 26044444670 scopus 로고    scopus 로고
    • Effect of Partial Charge Parametrization on the Fluid Phase Behavior of Hydrogen Sulfide
    • Kamath, G.; Lubna, N.; Potoff, J. J. Effect of Partial Charge Parametrization on the Fluid Phase Behavior of Hydrogen Sulfide. J. Chem. Phys. 2005, 123, 124505, 10.1063/1.2049278
    • (2005) J. Chem. Phys. , vol.123
    • Kamath, G.1    Lubna, N.2    Potoff, J.J.3
  • 40
    • 0031204342 scopus 로고    scopus 로고
    • Sulfur-Aromatic Interactions: A Computational Study of the Dimethyl Sulfide-Benzene Complex
    • Pranata, J. Sulfur-Aromatic Interactions: A Computational Study of the Dimethyl Sulfide-Benzene Complex. Bioorg. Chem. 1997, 25, 213-219, 10.1006/bioo.1997.1064
    • (1997) Bioorg. Chem. , vol.25 , pp. 213-219
    • Pranata, J.1
  • 41
    • 70349466392 scopus 로고    scopus 로고
    • Assessment of Standard Force Field Models against High-Quality Ab Initio Potential Curves for Prototypes of π-π, CH/π, and SH/π Interactions
    • Sherrill, C. D.; Sumpter, B. G.; Sinnokrot, M. O.; Marshall, M. S.; Hohenstein, E. G.; Walker, R. C.; Gould, I. R. Assessment of Standard Force Field Models against High-Quality Ab Initio Potential Curves for Prototypes of π-π, CH/π, and SH/π Interactions. J. Comput. Chem. 2009, 30, 2187-2193, 10.1002/jcc.21226
    • (2009) J. Comput. Chem. , vol.30 , pp. 2187-2193
    • Sherrill, C.D.1    Sumpter, B.G.2    Sinnokrot, M.O.3    Marshall, M.S.4    Hohenstein, E.G.5    Walker, R.C.6    Gould, I.R.7
  • 42
    • 25644448901 scopus 로고    scopus 로고
    • CH/π interactions involving aromatic amino acids: Refinement of the CHARMM Tryptophan Force Field
    • Macias, A. T.; MacKerell, A. D. CH/π interactions involving aromatic amino acids: Refinement of the CHARMM Tryptophan Force Field. J. Comput. Chem. 2005, 26, 1452-1463, 10.1002/jcc.20281
    • (2005) J. Comput. Chem. , vol.26 , pp. 1452-1463
    • Macias, A.T.1    Mackerell, A.D.2
  • 43
    • 84906248113 scopus 로고    scopus 로고
    • Simulation of Liquid and Supercritical Hydrogen Sulfide and of Alkali Ions in the Pure and Aqueous Liquid
    • Orabi, E. A.; Lamoureux, G. Simulation of Liquid and Supercritical Hydrogen Sulfide and of Alkali Ions in the Pure and Aqueous Liquid. J. Chem. Theory Comput. 2014, 10, 3221-3235, 10.1021/ct5002335
    • (2014) J. Chem. Theory Comput. , vol.10 , pp. 3221-3235
    • Orabi, E.A.1    Lamoureux, G.2
  • 44
    • 0022272067 scopus 로고
    • Molecular Electrostatic Potentials: An Effective Tool for the Elucidation of Biochemical Phenomena
    • Politzer, P.; Laurence, P. R.; Jayasuriya, K. Molecular Electrostatic Potentials: An Effective Tool for the Elucidation of Biochemical Phenomena. Environ. Health Perspect. 1985, 61, 191-202
    • (1985) Environ. Health Perspect. , vol.61 , pp. 191-202
    • Politzer, P.1    Laurence, P.R.2    Jayasuriya, K.3
  • 45
    • 0029745052 scopus 로고    scopus 로고
    • Cation-π Interactions in Aromatics of Biological and Medicinal Interest: Electrostatic Potential Surfaces as a Useful Qualitative Guide
    • Mecozzi, S.; West, A. P.; Dougherty, D. A. Cation-π Interactions in Aromatics of Biological and Medicinal Interest: Electrostatic Potential Surfaces as a Useful Qualitative Guide. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 10566-10571, 10.1073/pnas.93.20.10566
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , pp. 10566-10571
    • Mecozzi, S.1    West, A.P.2    Dougherty, D.A.3
  • 47
    • 80054695491 scopus 로고    scopus 로고
    • Computational Study of the Interaction of Indole-Like Molecules with Water and Hydrogen Sulfide
    • Cabaleiro-Lago, E. M.; Rodríguez-Otero, J.; Peña-Gallego, Á. Computational Study of the Interaction of Indole-Like Molecules with Water and Hydrogen Sulfide. J. Chem. Phys. 2011, 135, 134310, 10.1063/1.3643840
    • (2011) J. Chem. Phys. , vol.135
    • Cabaleiro-Lago, E.M.1    Rodríguez-Otero, J.2    Peña-Gallego, Á.3
  • 49
    • 77954332246 scopus 로고    scopus 로고
    • O-H···O versus O-H···S Hydrogen Bonding. 2. Alcohols and Thiols as Hydrogen Bond Acceptors
    • Biswal, H. S.; Shirhatti, P. R.; Wategaonkar, S. O-H···O versus O-H···S Hydrogen Bonding. 2. Alcohols and Thiols as Hydrogen Bond Acceptors. J. Phys. Chem. A 2010, 114, 6944-6955, 10.1021/jp102346n
    • (2010) J. Phys. Chem. A , vol.114 , pp. 6944-6955
    • Biswal, H.S.1    Shirhatti, P.R.2    Wategaonkar, S.3
  • 50
    • 77952397300 scopus 로고    scopus 로고
    • O-H···O versus O-H···S Hydrogen Bonding. 3. IR-UV Double Resonance Study of Hydrogen Bonded Complexes of p-Cresol with Diethyl Ether and Its Sulfur Analog
    • Biswal, H. S.; Wategaonkar, S. O-H···O versus O-H···S Hydrogen Bonding. 3. IR-UV Double Resonance Study of Hydrogen Bonded Complexes of p-Cresol with Diethyl Ether and Its Sulfur Analog. J. Phys. Chem. A 2010, 114, 5947-5957, 10.1021/jp100439w
    • (2010) J. Phys. Chem. A , vol.114 , pp. 5947-5957
    • Biswal, H.S.1    Wategaonkar, S.2
  • 51
    • 0003025551 scopus 로고
    • Mass Spectrum, Ionization Potential, and Appearance Potentials for Fragment Ions of Sulfuric Acid Vapor
    • Snow, K. B.; Thomas, T. F. Mass Spectrum, Ionization Potential, and Appearance Potentials for Fragment Ions of Sulfuric Acid Vapor. Int. J. Mass Spectrom. Ion Processes 1990, 96, 49-68, 10.1016/0168-1176(90)80041-z
    • (1990) Int. J. Mass Spectrom. Ion Processes , vol.96 , pp. 49-68
    • Snow, K.B.1    Thomas, T.F.2
  • 55
    • 36549100601 scopus 로고
    • High Resolution Zero Kinetic Energy Photoelectron Spectroscopy of Benzene and Determination of the Ionization Potential
    • Chewter, L. A.; Sander, M.; Müller-Dethlefs, K.; Schlag, E. W. High Resolution Zero Kinetic Energy Photoelectron Spectroscopy of Benzene and Determination of the Ionization Potential. J. Chem. Phys. 1987, 86, 4737-4744, 10.1063/1.452694
    • (1987) J. Chem. Phys. , vol.86 , pp. 4737-4744
    • Chewter, L.A.1    Sander, M.2    Müller-Dethlefs, K.3    Schlag, E.W.4
  • 56
    • 0001267281 scopus 로고
    • Toluene Cation: Nearly Free Rotation of the Methyl Group
    • Lu, K. T.; Eiden, G. C.; Weisshaar, J. C. Toluene Cation: Nearly Free Rotation of the Methyl Group. J. Phys. Chem. 1992, 96, 9742-9748, 10.1021/j100203a032
    • (1992) J. Phys. Chem. , vol.96 , pp. 9742-9748
    • Lu, K.T.1    Eiden, G.C.2    Weisshaar, J.C.3
  • 57
    • 33845279304 scopus 로고
    • Two-Laser Photoionization Supersonic Jet Mass Spectrometry of Aromatic Molecules
    • Hager, J. W.; Wallace, S. C. Two-Laser Photoionization Supersonic Jet Mass Spectrometry of Aromatic Molecules. Anal. Chem. 1988, 60, 5-10, 10.1021/ac00152a003
    • (1988) Anal. Chem. , vol.60 , pp. 5-10
    • Hager, J.W.1    Wallace, S.C.2
  • 58
    • 0000796009 scopus 로고
    • 2O) from the Electric Field Dependence of the Pump-Probe Photoionization Threshold
    • 2O) from the Electric Field Dependence of the Pump-Probe Photoionization Threshold. J. Chem. Phys. 1990, 92, 3240-3241, 10.1063/1.457879
    • (1990) J. Chem. Phys. , vol.92 , pp. 3240-3241
    • Lipert, R.J.1    Colson, S.D.2
  • 59
    • 3743085291 scopus 로고
    • Effects of Induction and Resonance in the Calculation of Ionization Potentials of Substituted Benzenes by Perturbation Molecular Orbital Theory
    • Johnstone, R. A. W.; Mellon, F. A. Effects of Induction and Resonance in the Calculation of Ionization Potentials of Substituted Benzenes by Perturbation Molecular Orbital Theory. J. Chem. Soc., Faraday Trans. 2 1973, 69, 36-42, 10.1039/f29736900036
    • (1973) J. Chem. Soc., Faraday Trans. 2 , vol.69 , pp. 36-42
    • Johnstone, R.A.W.1    Mellon, F.A.2
  • 60
    • 0037615284 scopus 로고
    • The Thermochemistry and Dissociation Dynamics of Internal-Energy-Selected Pyrazole and Imidazole Ions
    • Main-Bobo, J.; Olesik, S.; Gase, W.; Baer, T.; Mommers, A. A.; Holmes, J. L. The Thermochemistry and Dissociation Dynamics of Internal-Energy-Selected Pyrazole and Imidazole Ions. J. Am. Chem. Soc. 1986, 108, 677-683, 10.1021/ja00264a018
    • (1986) J. Am. Chem. Soc. , vol.108 , pp. 677-683
    • Main-Bobo, J.1    Olesik, S.2    Gase, W.3    Baer, T.4    Mommers, A.A.5    Holmes, J.L.6
  • 61
    • 79953276706 scopus 로고    scopus 로고
    • Calculated Vertical Ionization Energies of the Common α-Amino Acids in the Gas Phase and in Solution
    • Close, D. M. Calculated Vertical Ionization Energies of the Common α-Amino Acids in the Gas Phase and in Solution. J. Phys. Chem. A 2011, 115, 2900-2912, 10.1021/jp200503z
    • (2011) J. Phys. Chem. A , vol.115 , pp. 2900-2912
    • Close, D.M.1
  • 62
    • 0000978754 scopus 로고
    • He(I) and He(II) Photoelectron Spectra of Glycine and Related Molecules
    • Cannington, P. H.; Ham, N. S. He(I) and He(II) Photoelectron Spectra of Glycine and Related Molecules. J. Electron Spectrosc. Relat. Phenom. 1983, 32, 139-151, 10.1016/0368-2048(83)85092-0
    • (1983) J. Electron Spectrosc. Relat. Phenom. , vol.32 , pp. 139-151
    • Cannington, P.H.1    Ham, N.S.2
  • 63
    • 0001086499 scopus 로고
    • Complexes of Benzene with Formamide and Methanethiol as Models for Interactions of Protein Substructures
    • Cheney, B. V.; Schulz, M. W.; Cheney, J. Complexes of Benzene with Formamide and Methanethiol as Models for Interactions of Protein Substructures. Biochim. Biophys. Acta, Protein Struct. Mol. Enzymol. 1989, 996, 116-124, 10.1016/0167-4838(89)90103-9
    • (1989) Biochim. Biophys. Acta, Protein Struct. Mol. Enzymol. , vol.996 , pp. 116-124
    • Cheney, B.V.1    Schulz, M.W.2    Cheney, J.3
  • 64
    • 34347252335 scopus 로고    scopus 로고
    • Attractive Sulfur···π Interaction between Fluorinated Dimethyl Sulfur (FDMS) and Benzene
    • Yan, S.; Lee, J.; Kang, S.; Choi, K.-H.; Rhee, S. K.; Lee, J. Y. Attractive Sulfur···π Interaction between Fluorinated Dimethyl Sulfur (FDMS) and Benzene. Bull. Korean Chem. Soc. 2007, 28, 959-964, 10.5012/bkcs.2007.28.6.959
    • (2007) Bull. Korean Chem. Soc. , vol.28 , pp. 959-964
    • Yan, S.1    Lee, J.2    Kang, S.3    Choi, K.-H.4    Rhee, S.K.5    Lee, J.Y.6
  • 65
    • 34250177636 scopus 로고    scopus 로고
    • 2S-Benzene Dimer with DFT and Wavefunction-Based ab Initio Methods
    • 2S-Benzene Dimer with DFT and Wavefunction-Based ab Initio Methods. Chem. Phys. Lett. 2007, 441, 187-193, 10.1016/j.cplett.2007.05.026
    • (2007) Chem. Phys. Lett. , vol.441 , pp. 187-193
    • Wang, Y.1    Paulus, B.2
  • 66
    • 67649132908 scopus 로고    scopus 로고
    • Study of the Interaction between Water and Hydrogen Sulfide with Polycyclic Aromatic Hydrocarbons
    • Cabaleiro-Lago, E. M.; Carrazana-García, J. A.; Rodríguez-Otero, J. Study of the Interaction between Water and Hydrogen Sulfide with Polycyclic Aromatic Hydrocarbons. J. Chem. Phys. 2009, 130, 234307, 10.1063/1.3152577
    • (2009) J. Chem. Phys. , vol.130
    • Cabaleiro-Lago, E.M.1    Carrazana-García, J.A.2    Rodríguez-Otero, J.3
  • 68
    • 70449591226 scopus 로고    scopus 로고
    • Sulfur, Not Too Far behind O, N, and C: SH···π Hydrogen Bond
    • Biswal, H. S.; Wategaonkar, S. Sulfur, Not Too Far Behind O, N, and C: SH···π Hydrogen Bond. J. Phys. Chem. A 2009, 113, 12774-12782, 10.1021/jp907747w
    • (2009) J. Phys. Chem. A , vol.113 , pp. 12774-12782
    • Biswal, H.S.1    Wategaonkar, S.2
  • 69
    • 84856404085 scopus 로고    scopus 로고
    • Benchmark Interaction Energies for Biologically Relevant Noncovalent Complexes Containing Divalent Sulfur
    • Mintz, B. J.; Parks, J. M. Benchmark Interaction Energies for Biologically Relevant Noncovalent Complexes Containing Divalent Sulfur. J. Phys. Chem. A 2012, 116, 1086-1092, 10.1021/jp209536e
    • (2012) J. Phys. Chem. A , vol.116 , pp. 1086-1092
    • Mintz, B.J.1    Parks, J.M.2
  • 70
    • 84924416219 scopus 로고    scopus 로고
    • On the Properties of S···O and S···π Noncovalent Interactions: The Analysis of Geometry, Interaction Energy and Electron Density
    • Zhou, F.; Liu, R.; Li, P.; Zhang, H. On the Properties of S···O and S···π Noncovalent Interactions: The Analysis of Geometry, Interaction Energy and Electron Density. New J. Chem. 2015, 39, 1611-1618, 10.1039/c4nj01420k
    • (2015) New J. Chem. , vol.39 , pp. 1611-1618
    • Zhou, F.1    Liu, R.2    Li, P.3    Zhang, H.4
  • 72
    • 84990244455 scopus 로고    scopus 로고
    • Preferred Hydrogen-Bonding Partners of Cysteine: Implications for Regulating Cys Functions
    • Mazmanian, K.; Sargsyan, K.; Grauffel, C.; Dudev, T.; Lim, C. Preferred Hydrogen-Bonding Partners of Cysteine: Implications for Regulating Cys Functions. J. Phys. Chem. B 2016, 120, 10288-10296, 10.1021/acs.jpcb.6b08109
    • (2016) J. Phys. Chem. B , vol.120 , pp. 10288-10296
    • Mazmanian, K.1    Sargsyan, K.2    Grauffel, C.3    Dudev, T.4    Lim, C.5
  • 73
    • 66249145702 scopus 로고    scopus 로고
    • Geometric Characteristics of Hydrogen Bonds Involving Sulfur Atoms in Proteins
    • Zhou, P.; Tian, F.; Lv, F.; Shang, Z. Geometric Characteristics of Hydrogen Bonds Involving Sulfur Atoms in Proteins. Proteins: Struct., Funct., Bioinf. 2009, 76, 151-163, 10.1002/prot.22327
    • (2009) Proteins: Struct., Funct., Bioinf. , vol.76 , pp. 151-163
    • Zhou, P.1    Tian, F.2    Lv, F.3    Shang, Z.4
  • 74
    • 84866649748 scopus 로고    scopus 로고
    • Aromatic Residues Regulating Electron Relay Ability of S-Containing Amino Acids by Formations of S-π Multicenter Three-Electron Bonds in Proteins
    • Chen, X.; Tao, Y.; Li, J.; Dai, H.; Sun, W.; Huang, X.; Wei, Z. Aromatic Residues Regulating Electron Relay Ability of S-Containing Amino Acids by Formations of S-π Multicenter Three-Electron Bonds in Proteins. J. Phys. Chem. C 2012, 116, 19682-19688, 10.1021/jp306154x
    • (2012) J. Phys. Chem. C , vol.116 , pp. 19682-19688
    • Chen, X.1    Tao, Y.2    Li, J.3    Dai, H.4    Sun, W.5    Huang, X.6    Wei, Z.7
  • 75
    • 0029126537 scopus 로고
    • Regulation of Interprotein Electron Transfer by Trp 191 of Cytochrome c Peroxidase
    • Miller, M. A.; Vitello, L.; Erman, J. E. Regulation of Interprotein Electron Transfer By Trp 191 of Cytochrome c Peroxidase. Biochemistry 1995, 34, 12048-12058, 10.1021/bi00037a048
    • (1995) Biochemistry , vol.34 , pp. 12048-12058
    • Miller, M.A.1    Vitello, L.2    Erman, J.E.3
  • 76
    • 0032478116 scopus 로고    scopus 로고
    • Tryptophan Fluorescence Quenching by Methionine and Selenomethionine Residues of Calmodulin: Orientation of Peptide and Protein Binding
    • Yuan, T.; Weljie, A. M.; Vogel, H. J. Tryptophan Fluorescence Quenching by Methionine and Selenomethionine Residues of Calmodulin: Orientation of Peptide and Protein Binding. Biochemistry 1998, 37, 3187-3195, 10.1021/bi9716579
    • (1998) Biochemistry , vol.37 , pp. 3187-3195
    • Yuan, T.1    Weljie, A.M.2    Vogel, H.J.3
  • 77
    • 33947666527 scopus 로고    scopus 로고
    • Propensities of Polar and Aromatic Amino Acids in Noncanonical Interactions: Nonbonded Contacts Analysis of Protein-Ligand Complexes in Crystal Structures
    • Imai, Y. N.; Inoue, Y.; Yamamoto, Y. Propensities of Polar and Aromatic Amino Acids in Noncanonical Interactions: Nonbonded Contacts Analysis of Protein-Ligand Complexes in Crystal Structures. J. Med. Chem. 2007, 50, 1189-1196, 10.1021/jm061038a
    • (2007) J. Med. Chem. , vol.50 , pp. 1189-1196
    • Imai, Y.N.1    Inoue, Y.2    Yamamoto, Y.3
  • 79
    • 1842491681 scopus 로고    scopus 로고
    • Synthesis and in Vitro Evaluation of 2-Aminoquinazolin-4(3H)-One-Based Inhibitors for tRNA-Guanine Transglycosylase (TGT)
    • Meyer, E. A.; Furler, M.; Diederich, F.; Brenk, R.; Klebe, G. Synthesis and In Vitro Evaluation of 2-Aminoquinazolin-4(3H)-One-Based Inhibitors for tRNA-Guanine Transglycosylase (TGT). Helv. Chim. Acta 2004, 87, 1333-1356, 10.1002/hlca.200490122
    • (2004) Helv. Chim. Acta , vol.87 , pp. 1333-1356
    • Meyer, E.A.1    Furler, M.2    Diederich, F.3    Brenk, R.4    Klebe, G.5
  • 80
    • 33745670361 scopus 로고    scopus 로고
    • Structural Basis of the Inhibition of Golgi α-Mannosidase II by Mannostatin A and the Role of the Thiomethyl Moiety in Ligand-Protein Interactions
    • Kawatkar, S. P.; Kuntz, D. A.; Woods, R. J.; Rose, D. R.; Boons, G.-J. Structural Basis of the Inhibition of Golgi α-Mannosidase II by Mannostatin A and the Role of the Thiomethyl Moiety in Ligand-Protein Interactions. J. Am. Chem. Soc. 2006, 128, 8310-8319, 10.1021/ja061216p
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 8310-8319
    • Kawatkar, S.P.1    Kuntz, D.A.2    Woods, R.J.3    Rose, D.R.4    Boons, G.-J.5
  • 81
    • 33645549367 scopus 로고    scopus 로고
    • Structural Studies of a Potent Insect Maturation Inhibitor Bound to the Juvenile Hormone Esterase of Manduca Sexta
    • Wogulis, M.; Wheelock, C. E.; Kamita, S. G.; Hinton, A. C.; Whetstone, P. A.; Hammock, B. D.; Wilson, D. K. Structural Studies of a Potent Insect Maturation Inhibitor Bound to the Juvenile Hormone Esterase of Manduca Sexta. Biochemistry 2006, 45, 4045-4057, 10.1021/bi0521644
    • (2006) Biochemistry , vol.45 , pp. 4045-4057
    • Wogulis, M.1    Wheelock, C.E.2    Kamita, S.G.3    Hinton, A.C.4    Whetstone, P.A.5    Hammock, B.D.6    Wilson, D.K.7
  • 82
    • 68049090031 scopus 로고    scopus 로고
    • Binding and Inactivation Mechanism of a Humanized Fatty Acid Amide Hydrolase by α-Ketoheterocycle Inhibitors Revealed from Cocrystal Structures
    • Mileni, M.; Garfunkle, J.; DeMartino, J. K.; Cravatt, B. F.; Boger, D. L.; Stevens, R. C. Binding and Inactivation Mechanism of a Humanized Fatty Acid Amide Hydrolase by α-Ketoheterocycle Inhibitors Revealed from Cocrystal Structures. J. Am. Chem. Soc. 2009, 131, 10497-10506, 10.1021/ja902694n
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 10497-10506
    • Mileni, M.1    Garfunkle, J.2    Demartino, J.K.3    Cravatt, B.F.4    Boger, D.L.5    Stevens, R.C.6
  • 83
    • 73449138429 scopus 로고    scopus 로고
    • How to Replace the Residual Solvation Shell of Polar Active Site Residues to Achieve Nanomolar Inhibition of tRNA-Guanine Transglycosylase
    • Ritschel, T.; Kohler, P. C.; Neudert, G.; Heine, A.; Diederich, F.; Klebe, G. How to Replace the Residual Solvation Shell of Polar Active Site Residues to Achieve Nanomolar Inhibition of tRNA-Guanine Transglycosylase. ChemMedChem 2009, 4, 2012-2023, 10.1002/cmdc.200900343
    • (2009) ChemMedChem , vol.4 , pp. 2012-2023
    • Ritschel, T.1    Kohler, P.C.2    Neudert, G.3    Heine, A.4    Diederich, F.5    Klebe, G.6
  • 84
    • 79955766939 scopus 로고    scopus 로고
    • Aromatic Rings in Chemical and Biological Recognition: Energetics and Structures
    • Salonen, L. M.; Ellermann, M.; Diederich, F. Aromatic Rings in Chemical and Biological Recognition: Energetics and Structures. Angew. Chem., Int. Ed. 2011, 50, 4808-4842, 10.1002/anie.201007560
    • (2011) Angew. Chem., Int. Ed. , vol.50 , pp. 4808-4842
    • Salonen, L.M.1    Ellermann, M.2    Diederich, F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.