메뉴 건너뛰기




Volumn 33, Issue 2, 2018, Pages 309-321.e5

DNA Methylation Patterns Separate Senescence from Transformation Potential and Indicate Cancer Risk

Author keywords

aging; cancer; cancer risk; DNA methylation; epigenetic; malignant transformation; oncogene induced senescence; promoter CpG island; senescence

Indexed keywords

DNA;

EID: 85044335041     PISSN: 15356108     EISSN: 18783686     Source Type: Journal    
DOI: 10.1016/j.ccell.2018.01.008     Document Type: Article
Times cited : (74)

References (74)
  • 1
    • 0032401808 scopus 로고    scopus 로고
    • Aging and DNA methylation in colorectal mucosa and cancer
    • Ahuja, N., Li, Q., Mohan, A.L., Baylin, S.B., Issa, J.P., Aging and DNA methylation in colorectal mucosa and cancer. Cancer Res. 58 (1998), 5489–5494.
    • (1998) Cancer Res. , vol.58 , pp. 5489-5494
    • Ahuja, N.1    Li, Q.2    Mohan, A.L.3    Baylin, S.B.4    Issa, J.P.5
  • 2
    • 84897548625 scopus 로고    scopus 로고
    • Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
    • Aryee, M., Jaffe, A., Corrada-Bravo, H., Ladd-Acosta, C., Feinberg, A., Hansen, K., Irizarry, R.A., Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays. Bioinformatics 30 (2014), 1363–1369.
    • (2014) Bioinformatics , vol.30 , pp. 1363-1369
    • Aryee, M.1    Jaffe, A.2    Corrada-Bravo, H.3    Ladd-Acosta, C.4    Feinberg, A.5    Hansen, K.6    Irizarry, R.A.7
  • 4
    • 80053144962 scopus 로고    scopus 로고
    • A decade of exploring the cancer epigenome - biological and translational implications
    • Baylin, S.B., Jones, P.A., A decade of exploring the cancer epigenome - biological and translational implications. Nat. Rev. Cancer 11 (2011), 726–734.
    • (2011) Nat. Rev. Cancer , vol.11 , pp. 726-734
    • Baylin, S.B.1    Jones, P.A.2
  • 10
    • 0035500487 scopus 로고    scopus 로고
    • Cellular senescence as a tumor-suppressor mechanism
    • Campisi, J., Cellular senescence as a tumor-suppressor mechanism. Trends Cell Biol. 11 (2001), S27–S31.
    • (2001) Trends Cell Biol. , vol.11 , pp. S27-S31
    • Campisi, J.1
  • 11
    • 84873638532 scopus 로고    scopus 로고
    • Aging, cellular senescence, and cancer
    • Campisi, J., Aging, cellular senescence, and cancer. Annu. Rev. Physiol. 75 (2013), 685–705.
    • (2013) Annu. Rev. Physiol. , vol.75 , pp. 685-705
    • Campisi, J.1
  • 12
    • 34548186667 scopus 로고    scopus 로고
    • Cellular senescence: when bad things happen to good cells
    • Campisi, J., d'Adda di Fagagna, F., Cellular senescence: when bad things happen to good cells. Nat. Rev. Mol. Cell Biol. 8 (2007), 729–740.
    • (2007) Nat. Rev. Mol. Cell Biol. , vol.8 , pp. 729-740
    • Campisi, J.1    d'Adda di Fagagna, F.2
  • 15
    • 0036241916 scopus 로고    scopus 로고
    • Molecular mechanisms of gene silencing mediated by DNA methylation
    • Curradi, M., Izzo, A., Badaracco, G., Landsberger, N., Molecular mechanisms of gene silencing mediated by DNA methylation. Mol. Cell. Biol. 22 (2002), 3157–3173.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 3157-3173
    • Curradi, M.1    Izzo, A.2    Badaracco, G.3    Landsberger, N.4
  • 18
    • 84901853867 scopus 로고    scopus 로고
    • Cancer epigenetics: tumor heterogeneity, plasticity of stem-like states, and drug resistance
    • Easwaran, H., Tsai, H.C., Baylin, S.B., Cancer epigenetics: tumor heterogeneity, plasticity of stem-like states, and drug resistance. Mol. Cell 54 (2014), 716–727.
    • (2014) Mol. Cell , vol.54 , pp. 716-727
    • Easwaran, H.1    Tsai, H.C.2    Baylin, S.B.3
  • 27
    • 0344622606 scopus 로고
    • The serial cultivation of human diploid cell strains
    • Hayflick, L., Moorhead, P.S., The serial cultivation of human diploid cell strains. Exp. Cell Res. 25 (1961), 585–621.
    • (1961) Exp. Cell Res. , vol.25 , pp. 585-621
    • Hayflick, L.1    Moorhead, P.S.2
  • 29
    • 0028106737 scopus 로고
    • Dependence of transcriptional repression on CpG methylation density
    • Hsieh, C.L., Dependence of transcriptional repression on CpG methylation density. Mol. Cell. Biol. 14 (1994), 5487–5494.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 5487-5494
    • Hsieh, C.L.1
  • 30
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang da, W., Sherman, B.T., Lempicki, R.A., Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 37 (2009), 1–13.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 31
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da, W., Sherman, B.T., Lempicki, R.A., Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4 (2009), 44–57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 32
    • 84892909863 scopus 로고    scopus 로고
    • Aging and epigenetic drift: a vicious cycle
    • Issa, J.P., Aging and epigenetic drift: a vicious cycle. J. Clin. Invest. 124 (2014), 24–29.
    • (2014) J. Clin. Invest. , vol.124 , pp. 24-29
    • Issa, J.P.1
  • 33
    • 0028001087 scopus 로고
    • Methylation of the oestrogen receptor CpG island links ageing and neoplasia in human colon
    • Issa, J.P., Ottaviano, Y.L., Celano, P., Hamilton, S.R., Davidson, N.E., Baylin, S.B., Methylation of the oestrogen receptor CpG island links ageing and neoplasia in human colon. Nat. Genet. 7 (1994), 536–540.
    • (1994) Nat. Genet. , vol.7 , pp. 536-540
    • Issa, J.P.1    Ottaviano, Y.L.2    Celano, P.3    Hamilton, S.R.4    Davidson, N.E.5    Baylin, S.B.6
  • 34
    • 33847065486 scopus 로고    scopus 로고
    • The epigenomics of cancer
    • Jones, P.A., Baylin, S.B., The epigenomics of cancer. Cell 128 (2007), 683–692.
    • (2007) Cell , vol.128 , pp. 683-692
    • Jones, P.A.1    Baylin, S.B.2
  • 35
    • 77957757417 scopus 로고    scopus 로고
    • A Myc network accounts for similarities between embryonic stem and cancer cell transcription programs
    • Kim, J., Woo, A.J., Chu, J., Snow, J.W., Fujiwara, Y., Kim, C.G., Cantor, A.B., Orkin, S.H., A Myc network accounts for similarities between embryonic stem and cancer cell transcription programs. Cell 143 (2010), 313–324.
    • (2010) Cell , vol.143 , pp. 313-324
    • Kim, J.1    Woo, A.J.2    Chu, J.3    Snow, J.W.4    Fujiwara, Y.5    Kim, C.G.6    Cantor, A.B.7    Orkin, S.H.8
  • 36
    • 85047290006 scopus 로고    scopus 로고
    • Contribution of epigenetic mechanisms to variation in cancer risk among tissues
    • Klutstein, M., Moss, J., Kaplan, T., Cedar, H., Contribution of epigenetic mechanisms to variation in cancer risk among tissues. Proc. Natl. Acad. Sci. USA 114 (2017), 2230–2234.
    • (2017) Proc. Natl. Acad. Sci. USA , vol.114 , pp. 2230-2234
    • Klutstein, M.1    Moss, J.2    Kaplan, T.3    Cedar, H.4
  • 39
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
    • Krueger, F., Andrews, S.R., Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics 27 (2011), 1571–1572.
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Krueger, F.1    Andrews, S.R.2
  • 41
    • 47249111724 scopus 로고    scopus 로고
    • Epigenetic alteration of Wnt pathway antagonists in progressive glandular neoplasia of the lung
    • Licchesi, J.D., Westra, W.H., Hooker, C.M., Machida, E.O., Baylin, S.B., Herman, J.G., Epigenetic alteration of Wnt pathway antagonists in progressive glandular neoplasia of the lung. Carcinogenesis 29 (2008), 895–904.
    • (2008) Carcinogenesis , vol.29 , pp. 895-904
    • Licchesi, J.D.1    Westra, W.H.2    Hooker, C.M.3    Machida, E.O.4    Baylin, S.B.5    Herman, J.G.6
  • 44
    • 9244224723 scopus 로고    scopus 로고
    • Intrinsic tumour suppression
    • Lowe, S.W., Cepero, E., Evan, G., Intrinsic tumour suppression. Nature 432 (2004), 307–315.
    • (2004) Nature , vol.432 , pp. 307-315
    • Lowe, S.W.1    Cepero, E.2    Evan, G.3
  • 45
    • 84862173149 scopus 로고    scopus 로고
    • SWAN: subset-quantile within array normalization for Illumina Infinium HumanMethylation450 BeadChips
    • Maksimovic, J., Gordon, L., Oshlack, A., SWAN: subset-quantile within array normalization for Illumina Infinium HumanMethylation450 BeadChips. Genome Biol., 13, 2012, R44.
    • (2012) Genome Biol. , vol.13 , pp. R44
    • Maksimovic, J.1    Gordon, L.2    Oshlack, A.3
  • 47
    • 0025352187 scopus 로고
    • Advanced mammalian gene transfer: high titre retroviral vectors with multiple drug selection markers and a complementary helper-free packaging cell line
    • Morgenstern, J.P., Land, H., Advanced mammalian gene transfer: high titre retroviral vectors with multiple drug selection markers and a complementary helper-free packaging cell line. Nucleic Acids Res. 18 (1990), 3587–3596.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3587-3596
    • Morgenstern, J.P.1    Land, H.2
  • 48
    • 0037667702 scopus 로고    scopus 로고
    • Rb-mediated heterochromatin formation and silencing of E2F target genes during cellular senescence
    • Narita, M., Nunez, S., Heard, E., Narita, M., Lin, A.W., Hearn, S.A., Spector, D.L., Hannon, G.J., Lowe, S.W., Rb-mediated heterochromatin formation and silencing of E2F target genes during cellular senescence. Cell 113 (2003), 703–716.
    • (2003) Cell , vol.113 , pp. 703-716
    • Narita, M.1    Nunez, S.2    Heard, E.3    Narita, M.4    Lin, A.W.5    Hearn, S.A.6    Spector, D.L.7    Hannon, G.J.8    Lowe, S.W.9
  • 49
    • 33846569960 scopus 로고    scopus 로고
    • A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing
    • Ohm, J.E., McGarvey, K.M., Yu, X., Cheng, L., Schuebel, K.E., Cope, L., Mohammad, H.P., Chen, W., Daniel, V.C., Yu, W., et al. A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing. Nat. Genet. 39 (2007), 237–242.
    • (2007) Nat. Genet. , vol.39 , pp. 237-242
    • Ohm, J.E.1    McGarvey, K.M.2    Yu, X.3    Cheng, L.4    Schuebel, K.E.5    Cope, L.6    Mohammad, H.P.7    Chen, W.8    Daniel, V.C.9    Yu, W.10
  • 50
    • 39349096526 scopus 로고    scopus 로고
    • Hematopoiesis: an evolving paradigm for stem cell biology
    • Orkin, S.H., Zon, L.I., Hematopoiesis: an evolving paradigm for stem cell biology. Cell 132 (2008), 631–644.
    • (2008) Cell , vol.132 , pp. 631-644
    • Orkin, S.H.1    Zon, L.I.2
  • 52
    • 84926507971 scopus 로고    scopus 로고
    • Limma powers differential expression analyses for RNA-sequencing and microarray studies
    • Ritchie, M.E., Phipson, B., Wu, D., Hu, Y., Law, C.W., Shi, W., Smyth, G.K., Limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res., 43, 2015, e47.
    • (2015) Nucleic Acids Res. , vol.43 , pp. e47
    • Ritchie, M.E.1    Phipson, B.2    Wu, D.3    Hu, Y.4    Law, C.W.5    Shi, W.6    Smyth, G.K.7
  • 53
    • 79951912532 scopus 로고    scopus 로고
    • Four faces of cellular senescence
    • Rodier, F., Campisi, J., Four faces of cellular senescence. J. Cell Biol. 192 (2011), 547–556.
    • (2011) J. Cell Biol. , vol.192 , pp. 547-556
    • Rodier, F.1    Campisi, J.2
  • 54
    • 79952384705 scopus 로고    scopus 로고
    • Cancer epigenetics reaches mainstream oncology
    • Rodriguez-Paredes, M., Esteller, M., Cancer epigenetics reaches mainstream oncology. Nat. Med. 17 (2011), 330–339.
    • (2011) Nat. Med. , vol.17 , pp. 330-339
    • Rodriguez-Paredes, M.1    Esteller, M.2
  • 56
    • 34247897276 scopus 로고    scopus 로고
    • Dose-dependent oncogene-induced senescence in vivo and its evasion during mammary tumorigenesis
    • Sarkisian, C.J., Keister, B.A., Stairs, D.B., Boxer, R.B., Moody, S.E., Chodosh, L.A., Dose-dependent oncogene-induced senescence in vivo and its evasion during mammary tumorigenesis. Nat. Cell Biol. 9 (2007), 493–505.
    • (2007) Nat. Cell Biol. , vol.9 , pp. 493-505
    • Sarkisian, C.J.1    Keister, B.A.2    Stairs, D.B.3    Boxer, R.B.4    Moody, S.E.5    Chodosh, L.A.6
  • 59
    • 0030944985 scopus 로고    scopus 로고
    • Oncogenic ras provokes premature cell senescence associated with accumulation of p53 and p16INK4a
    • Serrano, M., Lin, A.W., McCurrach, M.E., Beach, D., Lowe, S.W., Oncogenic ras provokes premature cell senescence associated with accumulation of p53 and p16INK4a. Cell 88 (1997), 593–602.
    • (1997) Cell , vol.88 , pp. 593-602
    • Serrano, M.1    Lin, A.W.2    McCurrach, M.E.3    Beach, D.4    Lowe, S.W.5
  • 60
    • 84875745673 scopus 로고    scopus 로고
    • Interplay between the cancer genome and epigenome
    • Shen, H., Laird, P.W., Interplay between the cancer genome and epigenome. Cell 153 (2013), 38–55.
    • (2013) Cell , vol.153 , pp. 38-55
    • Shen, H.1    Laird, P.W.2
  • 61
    • 0242333835 scopus 로고    scopus 로고
    • Normalization of cDNA microarray data
    • Smyth, G.K., Speed, T., Normalization of cDNA microarray data. Methods 31 (2003), 265–273.
    • (2003) Methods , vol.31 , pp. 265-273
    • Smyth, G.K.1    Speed, T.2
  • 64
    • 85016121430 scopus 로고    scopus 로고
    • Stem cell divisions, somatic mutations, cancer etiology, and cancer prevention
    • Tomasetti, C., Li, L., Vogelstein, B., Stem cell divisions, somatic mutations, cancer etiology, and cancer prevention. Science 355 (2017), 1330–1334.
    • (2017) Science , vol.355 , pp. 1330-1334
    • Tomasetti, C.1    Li, L.2    Vogelstein, B.3
  • 65
    • 84921288028 scopus 로고    scopus 로고
    • Cancer etiology. Variation in cancer risk among tissues can be explained by the number of stem cell divisions
    • Tomasetti, C., Vogelstein, B., Cancer etiology. Variation in cancer risk among tissues can be explained by the number of stem cell divisions. Science 347 (2015), 78–81.
    • (2015) Science , vol.347 , pp. 78-81
    • Tomasetti, C.1    Vogelstein, B.2
  • 66
    • 84901288438 scopus 로고    scopus 로고
    • The role of senescent cells in ageing
    • van Deursen, J.M., The role of senescent cells in ageing. Nature 509 (2014), 439–446.
    • (2014) Nature , vol.509 , pp. 439-446
    • van Deursen, J.M.1
  • 68
    • 85030425782 scopus 로고    scopus 로고
    • Chronic cigarette smoke-induced epigenomic changes precede sensitization of bronchial epithelial cells to single-step transformation by KRAS mutations
    • Vaz, M., Hwang, S.Y., Kagiampakis, I., Phallen, J., Patil, A., O'Hagan, H.M., Murphy, L., Zahnow, C.A., Gabrielson, E., Velculescu, V.E., et al. Chronic cigarette smoke-induced epigenomic changes precede sensitization of bronchial epithelial cells to single-step transformation by KRAS mutations. Cancer Cell 32 (2017), 360–376.e6.
    • (2017) Cancer Cell , vol.32 , pp. 360-376.e6
    • Vaz, M.1    Hwang, S.Y.2    Kagiampakis, I.3    Phallen, J.4    Patil, A.5    O'Hagan, H.M.6    Murphy, L.7    Zahnow, C.A.8    Gabrielson, E.9    Velculescu, V.E.10
  • 70
    • 85019168837 scopus 로고    scopus 로고
    • CHD4 has oncogenic functions in initiating and maintaining epigenetic suppression of multiple tumor suppressor Genes
    • Xia, L., Huang, W., Bellani, M., Seidman, M.M., Wu, K., Fan, D., Nie, Y., Cai, Y., Zhang, Y.W., Yu, L.R., et al. CHD4 has oncogenic functions in initiating and maintaining epigenetic suppression of multiple tumor suppressor Genes. Cancer Cell 31 (2017), 653–668.e7.
    • (2017) Cancer Cell , vol.31 , pp. 653-668.e7
    • Xia, L.1    Huang, W.2    Bellani, M.3    Seidman, M.M.4    Wu, K.5    Fan, D.6    Nie, Y.7    Cai, Y.8    Zhang, Y.W.9    Yu, L.R.10
  • 71
    • 84938923353 scopus 로고    scopus 로고
    • Inferring regulatory element landscapes and transcription factor networks from cancer methylomes
    • Yao, L., Shen, H., Laird, P.W., Farnham, P.J., Berman, B.P., Inferring regulatory element landscapes and transcription factor networks from cancer methylomes. Genome Biol., 16, 2015, 105.
    • (2015) Genome Biol. , vol.16 , pp. 105
    • Yao, L.1    Shen, H.2    Laird, P.W.3    Farnham, P.J.4    Berman, B.P.5
  • 72
    • 84927698872 scopus 로고    scopus 로고
    • Common features of chromatin in aging and cancer: cause or coincidence?
    • Zane, L., Sharma, V., Misteli, T., Common features of chromatin in aging and cancer: cause or coincidence?. Trends Cell Biol. 24 (2014), 686–694.
    • (2014) Trends Cell Biol. , vol.24 , pp. 686-694
    • Zane, L.1    Sharma, V.2    Misteli, T.3
  • 74
    • 3342972121 scopus 로고    scopus 로고
    • Does a sentinel or a subset of short telomeres determine replicative senescence?
    • Zou, Y., Sfeir, A., Gryaznov, S.M., Shay, J.W., Wright, W.E., Does a sentinel or a subset of short telomeres determine replicative senescence?. Mol. Biol. Cell 15 (2004), 3709–3718.
    • (2004) Mol. Biol. Cell , vol.15 , pp. 3709-3718
    • Zou, Y.1    Sfeir, A.2    Gryaznov, S.M.3    Shay, J.W.4    Wright, W.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.