Normalization of cDNA microarray data

Methods

Volumn 31, Issue 4, 2003, Pages 265-273

  Smyth, Gordon K ^a   Speed, Terry ^a,b  

^a WALTER AND ELIZA HALL INSTITUTE OF MEDICAL RESEARCH   (Australia)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; COMPUTER PROGRAM; DATA ANALYSIS; DNA MICROARRAY; PRIORITY JOURNAL; STATISTICAL ANALYSIS;

EID: 0242333835     PISSN: 10462023     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1046-2023(03)00155-5     Document Type: Article

References (10)

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2. GenePix Pro Microarray and Array Analysis Software, Axon Instruments Inc. Available from: http://www.axon.com.
3. Dudoit S., Yang Y.H., Callow M.J., Speed T.P. Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Statistica Sinica. 12:2002;111-140.
4. Cleveland W.S., Grosse E., Shyu W.M. Local regression models. Chambers J.M., Hastie T.J. Statistical Models in S. 1992;Wadsworth & Brooks/Cole.
5. Y.H. Yang, S. Dudoit, P. Luu, T.P. Speed, Normalization for cDNA microarray data, in: M.L. Bittner, Y. Chen, A.N. Dorsel, E.R. Dougherty, (Eds.), Microarrays: Optical Technologies and Informatics, Proceedings of SPIE, vol. 4266, 2001.
6. Yang Y.H., Dudoit S., Luu P., Lin D.M., Peng V., Ngai J., Speed T.P. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 30(4):2002;e15.
7. Callow M.J., Dudoit S., Gong E.L., Speed T.P., Rubin E.M. Microarray expression profiling identifies genes with altered expression in HDL deficient mice. Genome Res. 10:2000;2022-2029.
8. Dudoit S., Yang Y.H., Bolstad B. Using R for the analysis of DNA microarray data. R News. 2(1):2002;24-32.
9. Dudoit S., Yang Y.H. Bioconductor R packages for exploratory analysis and normalization of cDNA microarray data. Parmigiani G., Garrett E.S., Irizarry R.A., Zeger S.L. The Analysis of Gene Expression Data: Methods and Software. 2002;73-101 Springer, New York.
10. Lönnstedt I., Speed T.P. Replicated microarray data. Statistica Sinica. 12:2002;31-46.