-
1
-
-
84930535796
-
Precision medicine—personalized, problematic, and promising
-
Jameson, J.L., Longo, D.L., Precision medicine—personalized, problematic, and promising. N Engl J Med 372:23 (2015), 2229–2234.
-
(2015)
N Engl J Med
, vol.372
, Issue.23
, pp. 2229-2234
-
-
Jameson, J.L.1
Longo, D.L.2
-
2
-
-
84946918319
-
The vocabulary of microbiome research: a proposal
-
Marchesi, J.R., Ravel, J., The vocabulary of microbiome research: a proposal. Microbiome, 3, 2015, 31.
-
(2015)
Microbiome
, vol.3
, pp. 31
-
-
Marchesi, J.R.1
Ravel, J.2
-
3
-
-
84958841613
-
The gut microbiota and host health: a new clinical frontier
-
Marchesi, J.R., Adams, D.H., Fava, F., et al. The gut microbiota and host health: a new clinical frontier. Gut 65:2 (2016), 330–339.
-
(2016)
Gut
, vol.65
, Issue.2
, pp. 330-339
-
-
Marchesi, J.R.1
Adams, D.H.2
Fava, F.3
-
4
-
-
84865231395
-
Transforming clinical microbiology with bacterial genome sequencing
-
Didelot, X., Bowden, R., Wilson, D.J., Peto, T.E., Crook, D.W., Transforming clinical microbiology with bacterial genome sequencing. Nat Rev Genet 13:9 (2012), 601–612.
-
(2012)
Nat Rev Genet
, vol.13
, Issue.9
, pp. 601-612
-
-
Didelot, X.1
Bowden, R.2
Wilson, D.J.3
Peto, T.E.4
Crook, D.W.5
-
5
-
-
84866148001
-
Routine use of microbial whole genome sequencing in diagnostic and public health microbiology
-
Köser, C.U., Ellington, M.J., Cartwright, E.J.P., et al. Routine use of microbial whole genome sequencing in diagnostic and public health microbiology. PLoS Pathog, 8(8), 2012, e1002824.
-
(2012)
PLoS Pathog
, vol.8
, Issue.8
, pp. e1002824
-
-
Köser, C.U.1
Ellington, M.J.2
Cartwright, E.J.P.3
-
6
-
-
84899573966
-
Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli
-
Joensen, K.G., Scheutz, F., Lund, O., et al. Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli. J Clin Microbiol 52:5 (2014), 1501–1510.
-
(2014)
J Clin Microbiol
, vol.52
, Issue.5
, pp. 1501-1510
-
-
Joensen, K.G.1
Scheutz, F.2
Lund, O.3
-
7
-
-
4444308959
-
Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales
-
Keim, P., Van Ert, M.N., Pearson, T., Vogler, A.J., Huynh, L.Y., Wagner, D.M., Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infect Genet Evol 4:3 (2004), 205–213.
-
(2004)
Infect Genet Evol
, vol.4
, Issue.3
, pp. 205-213
-
-
Keim, P.1
Van Ert, M.N.2
Pearson, T.3
Vogler, A.J.4
Huynh, L.Y.5
Wagner, D.M.6
-
8
-
-
75649084906
-
Evolution of MRSA during hospital transmission and intercontinental spread
-
Harris, S.R., Feil, E.J., Holden, M.T., et al. Evolution of MRSA during hospital transmission and intercontinental spread. Science 327:5964 (2010), 469–474.
-
(2010)
Science
, vol.327
, Issue.5964
, pp. 469-474
-
-
Harris, S.R.1
Feil, E.J.2
Holden, M.T.3
-
9
-
-
84903782426
-
Bacterial whole-genome sequencing revisited: portable, scalable, and standardized analysis for typing and detection of virulence and antibiotic resistance genes
-
Leopold, S.R., Goering, R.V., Witten, A., Harmsen, D., Mellmann, A., Bacterial whole-genome sequencing revisited: portable, scalable, and standardized analysis for typing and detection of virulence and antibiotic resistance genes. J Clin Microbiol 52:7 (2014), 2365–2370.
-
(2014)
J Clin Microbiol
, vol.52
, Issue.7
, pp. 2365-2370
-
-
Leopold, S.R.1
Goering, R.V.2
Witten, A.3
Harmsen, D.4
Mellmann, A.5
-
10
-
-
84903790667
-
Next-generation sequencing for typing and detection of resistance genes: performance of a new commercial method during an outbreak of extended-spectrum-β-lactamase-producing Escherichia coli
-
Veenemans, J., Overdevest, I.T., Snelders, E., et al. Next-generation sequencing for typing and detection of resistance genes: performance of a new commercial method during an outbreak of extended-spectrum-β-lactamase-producing Escherichia coli. J Clin Microbiol 52:7 (2014), 2454–2460.
-
(2014)
J Clin Microbiol
, vol.52
, Issue.7
, pp. 2454-2460
-
-
Veenemans, J.1
Overdevest, I.T.2
Snelders, E.3
-
11
-
-
84996946612
-
Epidemiological surveillance and typing methods to track antibiotic resistant strains using high throughput sequencing
-
Machado, M.P., Ribeiro-Gonçalves, B., Silva, M., Ramirez, M., Carriço, J.A., Epidemiological surveillance and typing methods to track antibiotic resistant strains using high throughput sequencing. Methods Mol Biol 1520 (2017), 331–356.
-
(2017)
Methods Mol Biol
, vol.1520
, pp. 331-356
-
-
Machado, M.P.1
Ribeiro-Gonçalves, B.2
Silva, M.3
Ramirez, M.4
Carriço, J.A.5
-
12
-
-
0021153574
-
Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis
-
Schwartz, D.C., Cantor, C.R., Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis. Cell 37:1 (1984), 67–75.
-
(1984)
Cell
, vol.37
, Issue.1
, pp. 67-75
-
-
Schwartz, D.C.1
Cantor, C.R.2
-
13
-
-
28744448668
-
Choosing an appropriate bacterial typing technique for epidemiologic studies
-
Foxman, B., Zhang, L., Koopman, J.S., Manning, S.D., Marrs, C.F., Choosing an appropriate bacterial typing technique for epidemiologic studies. Epidemiol Perspect Innov, 2, 2005, 10.
-
(2005)
Epidemiol Perspect Innov
, vol.2
, pp. 10
-
-
Foxman, B.1
Zhang, L.2
Koopman, J.S.3
Manning, S.D.4
Marrs, C.F.5
-
14
-
-
0035351051
-
PulseNet: the molecular subtyping network for foodborne bacterial disease surveillance, United States
-
Swaminathan, B., Barrett, T.J., Hunter, S.B., Tauxe, R.V., CDC PulseNet Task Force. PulseNet: the molecular subtyping network for foodborne bacterial disease surveillance, United States. Emerg Infect Dis 7:3 (2001), 382–389.
-
(2001)
Emerg Infect Dis
, vol.7
, Issue.3
, pp. 382-389
-
-
Swaminathan, B.1
Barrett, T.J.2
Hunter, S.B.3
Tauxe, R.V.4
-
15
-
-
53149119976
-
Evaluation and validation of a PulseNet standardized pulsed-field gel electrophoresis protocol for subtyping Vibrio parahaemolyticus: an international multicenter collaborative study
-
Kam, K.M., Luey, C.K., Parsons, M.B., et al., Vibrio parahaemolyticus PulseNet PFGE Protocol Working Group. Evaluation and validation of a PulseNet standardized pulsed-field gel electrophoresis protocol for subtyping Vibrio parahaemolyticus: an international multicenter collaborative study. J Clin Microbiol 46:8 (2008), 2766–2773.
-
(2008)
J Clin Microbiol
, vol.46
, Issue.8
, pp. 2766-2773
-
-
Kam, K.M.1
Luey, C.K.2
Parsons, M.B.3
-
16
-
-
84960839768
-
An economic evaluation of PulseNet: a network for foodborne disease surveillance
-
Scharff, R.L., Besser, J., Sharp, D.J., Jones, T.F., Peter, G.S., Hedberg, C.W., An economic evaluation of PulseNet: a network for foodborne disease surveillance. Am J Prev Med 50:5 Suppl 1 (2016), S66–S73.
-
(2016)
Am J Prev Med
, vol.50
, Issue.5
, pp. S66-S73
-
-
Scharff, R.L.1
Besser, J.2
Sharp, D.J.3
Jones, T.F.4
Peter, G.S.5
Hedberg, C.W.6
-
17
-
-
84870977260
-
Whole genome sequencing in the prevention and control of Staphylococcus aureus infection
-
Price, J.R., Didelot, X., Crook, D.W., Llewelyn, M.J., Paul, J., Whole genome sequencing in the prevention and control of Staphylococcus aureus infection. J Hosp Infect 83:1 (2013), 14–21.
-
(2013)
J Hosp Infect
, vol.83
, Issue.1
, pp. 14-21
-
-
Price, J.R.1
Didelot, X.2
Crook, D.W.3
Llewelyn, M.J.4
Paul, J.5
-
18
-
-
85034588618
-
A comparison of molecular typing methods applied to Enterobacter cloacae complex: hsp60 sequencing, Rep-PCR, and MLST
-
Viau, R.A., Kiedrowski, L.M., Kreiswirth, B.N., et al. A comparison of molecular typing methods applied to Enterobacter cloacae complex: hsp60 sequencing, Rep-PCR, and MLST. Pathog Immun 2:1 (2017), 23–33.
-
(2017)
Pathog Immun
, vol.2
, Issue.1
, pp. 23-33
-
-
Viau, R.A.1
Kiedrowski, L.M.2
Kreiswirth, B.N.3
-
19
-
-
84925263609
-
Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology
-
Salipante, S.J., SenGupta, D.J., Cummings, L.A., Land, T.A., Hoogestraat, D.R., Cookson, B.T., Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology. J Clin Microbiol 53:4 (2015), 1072–1079.
-
(2015)
J Clin Microbiol
, vol.53
, Issue.4
, pp. 1072-1079
-
-
Salipante, S.J.1
SenGupta, D.J.2
Cummings, L.A.3
Land, T.A.4
Hoogestraat, D.R.5
Cookson, B.T.6
-
20
-
-
84873822504
-
Automated extraction of typing information for bacterial pathogens from whole genome sequence data: Neisseria meningitidis as an exemplar
-
Jolley, K.A., Maiden, M.C., Automated extraction of typing information for bacterial pathogens from whole genome sequence data: Neisseria meningitidis as an exemplar. Euro Surveill, 18(4), 2013, 20379.
-
(2013)
Euro Surveill
, vol.18
, Issue.4
, pp. 20379
-
-
Jolley, K.A.1
Maiden, M.C.2
-
21
-
-
84907371489
-
A robust SNP barcode for typing Mycobacterium tuberculosis complex strains
-
Coll, F., McNerney, R., Guerra-Assunção, J.A., et al. A robust SNP barcode for typing Mycobacterium tuberculosis complex strains. Nat Commun, 5, 2014, 4812.
-
(2014)
Nat Commun
, vol.5
, pp. 4812
-
-
Coll, F.1
McNerney, R.2
Guerra-Assunção, J.A.3
-
22
-
-
85019622504
-
Comparison of whole-genome sequencing methods for analysis of three methicillin-resistant Staphylococcus aureus outbreaks
-
Cunningham, S.A., Chia, N., Jeraldo, P.R., et al. Comparison of whole-genome sequencing methods for analysis of three methicillin-resistant Staphylococcus aureus outbreaks. J Clin Microbiol 55:6 (2017), 1946–1953.
-
(2017)
J Clin Microbiol
, vol.55
, Issue.6
, pp. 1946-1953
-
-
Cunningham, S.A.1
Chia, N.2
Jeraldo, P.R.3
-
23
-
-
1342304133
-
eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
-
Feil, E.J., Li, B.C., Aanensen, D.M., Hanage, W.P., Spratt, B.G., eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol 186:5 (2004), 1518–1530.
-
(2004)
J Bacteriol
, vol.186
, Issue.5
, pp. 1518-1530
-
-
Feil, E.J.1
Li, B.C.2
Aanensen, D.M.3
Hanage, W.P.4
Spratt, B.G.5
-
24
-
-
84927935396
-
TypOn: the microbial typing ontology
-
Vaz, C., Francisco, A.P., Silva, M., et al. TypOn: the microbial typing ontology. J Biomed Semantics, 5(1), 2014, 43.
-
(2014)
J Biomed Semantics
, vol.5
, Issue.1
, pp. 43
-
-
Vaz, C.1
Francisco, A.P.2
Silva, M.3
-
25
-
-
85014853204
-
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods
-
Nascimento, M., Sousa, A., Ramirez, M., Francisco, A.P., Carriço, J.A., Vaz, C., PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods. Bioinformatics 33:1 (2017), 128–129.
-
(2017)
Bioinformatics
, vol.33
, Issue.1
, pp. 128-129
-
-
Nascimento, M.1
Sousa, A.2
Ramirez, M.3
Francisco, A.P.4
Carriço, J.A.5
Vaz, C.6
-
26
-
-
0034005677
-
Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus
-
Enright, M.C., Day, N.P., Davies, C.E., Peacock, S.J., Spratt, B.G., Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus. J Clin Microbiol 38:3 (2000), 1008–1015.
-
(2000)
J Clin Microbiol
, vol.38
, Issue.3
, pp. 1008-1015
-
-
Enright, M.C.1
Day, N.P.2
Davies, C.E.3
Peacock, S.J.4
Spratt, B.G.5
-
27
-
-
0034924336
-
Multiplex PCR for the detection of tetracycline resistant genes
-
Ng, L.K., Martin, I., Alfa, M., Mulvey, M., Multiplex PCR for the detection of tetracycline resistant genes. Mol Cell Probes 15:4 (2001), 209–215.
-
(2001)
Mol Cell Probes
, vol.15
, Issue.4
, pp. 209-215
-
-
Ng, L.K.1
Martin, I.2
Alfa, M.3
Mulvey, M.4
-
28
-
-
84902602767
-
Actionable diagnosis of neuroleptospirosis by next-generation sequencing
-
Wilson, M.R., Naccache, S.N., Samayoa, E., et al. Actionable diagnosis of neuroleptospirosis by next-generation sequencing. N Engl J Med 370:25 (2014), 2408–2417.
-
(2014)
N Engl J Med
, vol.370
, Issue.25
, pp. 2408-2417
-
-
Wilson, M.R.1
Naccache, S.N.2
Samayoa, E.3
-
29
-
-
85005995732
-
Development of a Single Locus Sequence Typing (SLST) scheme for typing bacterial species directly from complex communities
-
Scholz, C.F., Jensen, A., Development of a Single Locus Sequence Typing (SLST) scheme for typing bacterial species directly from complex communities. Methods Mol Biol 1535 (2017), 97–107.
-
(2017)
Methods Mol Biol
, vol.1535
, pp. 97-107
-
-
Scholz, C.F.1
Jensen, A.2
-
30
-
-
84934275888
-
Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data
-
Sahl, J.W., Schupp, J.M., Rasko, D.A., Colman, R.E., Foster, J.T., Keim, P., Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data. Genome Med, 7(1), 2015, 52.
-
(2015)
Genome Med
, vol.7
, Issue.1
, pp. 52
-
-
Sahl, J.W.1
Schupp, J.M.2
Rasko, D.A.3
Colman, R.E.4
Foster, J.T.5
Keim, P.6
-
31
-
-
84891776599
-
PATRIC, the bacterial bioinformatics database and analysis resource
-
Wattam, A.R., Abraham, D., Dalay, O., et al. PATRIC, the bacterial bioinformatics database and analysis resource. Nucleic Acids Res 42:Database issue (2014), D581–D591.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.Database issue
, pp. D581-D591
-
-
Wattam, A.R.1
Abraham, D.2
Dalay, O.3
-
32
-
-
85014025970
-
MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples
-
Zolfo, M., Tett, A., Jousson, O., Donati, C., Segata, N., MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples. Nucleic Acids Res, 45(2), 2017, e7.
-
(2017)
Nucleic Acids Res
, vol.45
, Issue.2
, pp. e7
-
-
Zolfo, M.1
Tett, A.2
Jousson, O.3
Donati, C.4
Segata, N.5
-
33
-
-
66249129571
-
Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease
-
Willing, B., Halfvarson, J., Dicksved, J., et al. Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease. Inflamm Bowel Dis 15:5 (2009), 653–660.
-
(2009)
Inflamm Bowel Dis
, vol.15
, Issue.5
, pp. 653-660
-
-
Willing, B.1
Halfvarson, J.2
Dicksved, J.3
-
34
-
-
78649686679
-
A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes
-
Willing, B.P., Dicksved, J., Halfvarson, J., et al. A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes. Gastroenterology 139:6 (2010), 1844–1854.e1841.
-
(2010)
Gastroenterology
, vol.139
, Issue.6
, pp. 1844-1854.e1841
-
-
Willing, B.P.1
Dicksved, J.2
Halfvarson, J.3
-
35
-
-
85012906125
-
IgA-coated E. coli enriched in Crohn's disease spondyloarthritis promote TH17-dependent inflammation
-
Viladomiu, M., Kivolowitz, C., Abdulhamid, A., et al. IgA-coated E. coli enriched in Crohn's disease spondyloarthritis promote TH17-dependent inflammation. Sci Transl Med, 9(376), 2017.
-
(2017)
Sci Transl Med
, vol.9
, Issue.376
-
-
Viladomiu, M.1
Kivolowitz, C.2
Abdulhamid, A.3
-
36
-
-
84896092821
-
The treatment-naive microbiome in new-onset Crohn's disease
-
Gevers, D., Kugathasan, S., Denson, L.A., et al. The treatment-naive microbiome in new-onset Crohn's disease. Cell Host Microbe 15:3 (2014), 382–392.
-
(2014)
Cell Host Microbe
, vol.15
, Issue.3
, pp. 382-392
-
-
Gevers, D.1
Kugathasan, S.2
Denson, L.A.3
-
37
-
-
84882334105
-
Fusobacterium nucleatum promotes colorectal carcinogenesis by modulating E-cadherin/β-catenin signaling via its FadA adhesin
-
Rubinstein, M.R., Wang, X., Liu, W., Hao, Y., Cai, G., Han, Y.W., Fusobacterium nucleatum promotes colorectal carcinogenesis by modulating E-cadherin/β-catenin signaling via its FadA adhesin. Cell Host Microbe 14:2 (2013), 195–206.
-
(2013)
Cell Host Microbe
, vol.14
, Issue.2
, pp. 195-206
-
-
Rubinstein, M.R.1
Wang, X.2
Liu, W.3
Hao, Y.4
Cai, G.5
Han, Y.W.6
-
38
-
-
84925500413
-
Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile
-
Buffie, C.G., Bucci, V., Stein, R.R., et al. Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile. Nature 517:7533 (2015), 205–208.
-
(2015)
Nature
, vol.517
, Issue.7533
, pp. 205-208
-
-
Buffie, C.G.1
Bucci, V.2
Stein, R.R.3
-
39
-
-
84979998476
-
Gut microbiome predictors of treatment response and recurrence in primary Clostridium difficile infection
-
Khanna, S., Montassier, E., Schmidt, B., et al. Gut microbiome predictors of treatment response and recurrence in primary Clostridium difficile infection. Aliment Pharmacol Ther 44:7 (2016), 715–727.
-
(2016)
Aliment Pharmacol Ther
, vol.44
, Issue.7
, pp. 715-727
-
-
Khanna, S.1
Montassier, E.2
Schmidt, B.3
-
40
-
-
84964247557
-
Dynamics of the fecal microbiome in patients with recurrent and nonrecurrent Clostridium difficile infection
-
Seekatz, A.M., Rao, K., Santhosh, K., Young, V.B., Dynamics of the fecal microbiome in patients with recurrent and nonrecurrent Clostridium difficile infection. Genome Med, 8(1), 2016, 47.
-
(2016)
Genome Med
, vol.8
, Issue.1
, pp. 47
-
-
Seekatz, A.M.1
Rao, K.2
Santhosh, K.3
Young, V.B.4
-
41
-
-
84876377297
-
The duodenal microbiota composition of adult celiac disease patients is associated with the clinical manifestation of the disease
-
Wacklin, P., Kaukinen, K., Tuovinen, E., et al. The duodenal microbiota composition of adult celiac disease patients is associated with the clinical manifestation of the disease. Inflamm Bowel Dis 19:5 (2013), 934–941.
-
(2013)
Inflamm Bowel Dis
, vol.19
, Issue.5
, pp. 934-941
-
-
Wacklin, P.1
Kaukinen, K.2
Tuovinen, E.3
-
42
-
-
84887323708
-
Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis
-
Scher, J.U., Sczesnak, A., Longman, R.S., et al. Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis. Elife, 2, 2013, e01202.
-
(2013)
Elife
, vol.2
, pp. e01202
-
-
Scher, J.U.1
Sczesnak, A.2
Longman, R.S.3
-
43
-
-
84977496039
-
An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis
-
Chen, J., Wright, K., Davis, J.M., et al. An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis. Genome Med, 8(1), 2016, 43.
-
(2016)
Genome Med
, vol.8
, Issue.1
, pp. 43
-
-
Chen, J.1
Wright, K.2
Davis, J.M.3
-
44
-
-
63749103609
-
New developments in microbial interspecies signaling
-
Shank, E.A., Kolter, R., New developments in microbial interspecies signaling. Curr Opin Microbiol 12:2 (2009), 205–214.
-
(2009)
Curr Opin Microbiol
, vol.12
, Issue.2
, pp. 205-214
-
-
Shank, E.A.1
Kolter, R.2
-
45
-
-
84941012212
-
Antibiotics and the art of bacterial war
-
Cornforth, D.M., Foster, K.R., Antibiotics and the art of bacterial war. Proc Natl Acad Sci U S A 112:35 (2015), 10827–10828.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, Issue.35
, pp. 10827-10828
-
-
Cornforth, D.M.1
Foster, K.R.2
-
46
-
-
33750503724
-
Control of gram-negative bacteria in experimental animals by streptomycin
-
Jones, D., Metzger, H.J., Schatz, A., Waksman, S.A., Control of gram-negative bacteria in experimental animals by streptomycin. Science 100:2588 (1944), 103–105.
-
(1944)
Science
, vol.100
, Issue.2588
, pp. 103-105
-
-
Jones, D.1
Metzger, H.J.2
Schatz, A.3
Waksman, S.A.4
-
47
-
-
84895076873
-
Genome mining of Streptomyces ambofaciens
-
Aigle, B., Lautru, S., Spiteller, D., et al. Genome mining of Streptomyces ambofaciens. J Ind Microbiol Biotechnol 41:2 (2014), 251–263.
-
(2014)
J Ind Microbiol Biotechnol
, vol.41
, Issue.2
, pp. 251-263
-
-
Aigle, B.1
Lautru, S.2
Spiteller, D.3
-
48
-
-
84895072793
-
Microbial genome mining for accelerated natural products discovery: is a renaissance in the making?
-
Bachmann, B.O., Van Lanen, S.G., Baltz, R.H., Microbial genome mining for accelerated natural products discovery: is a renaissance in the making?. J Ind Microbiol Biotechnol 41:2 (2014), 175–184.
-
(2014)
J Ind Microbiol Biotechnol
, vol.41
, Issue.2
, pp. 175-184
-
-
Bachmann, B.O.1
Van Lanen, S.G.2
Baltz, R.H.3
-
49
-
-
84908079780
-
A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics
-
Donia, M.S., Cimermancic, P., Schulze, C.J., et al. A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics. Cell 158:6 (2014), 1402–1414.
-
(2014)
Cell
, vol.158
, Issue.6
, pp. 1402-1414
-
-
Donia, M.S.1
Cimermancic, P.2
Schulze, C.J.3
-
50
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou, R., Fremaux, C., Deveau, H., et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science 315:5819 (2007), 1709–1712.
-
(2007)
Science
, vol.315
, Issue.5819
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
-
51
-
-
84873729095
-
Multiplex genome engineering using CRISPR/Cas systems
-
Cong, L., Ran, F.A., Cox, D., et al. Multiplex genome engineering using CRISPR/Cas systems. Science 339:6121 (2013), 819–823.
-
(2013)
Science
, vol.339
, Issue.6121
, pp. 819-823
-
-
Cong, L.1
Ran, F.A.2
Cox, D.3
-
52
-
-
84983142945
-
Exploiting CRISPR-Cas nucleases to produce sequence-specific antimicrobials
-
Bikard, D., Euler, C.W., Jiang, W., et al. Exploiting CRISPR-Cas nucleases to produce sequence-specific antimicrobials. Nat Biotechnol 32:11 (2014), 1146–1150.
-
(2014)
Nat Biotechnol
, vol.32
, Issue.11
, pp. 1146-1150
-
-
Bikard, D.1
Euler, C.W.2
Jiang, W.3
-
53
-
-
70149096873
-
Pharmacometabonomic identification of a significant host-microbiome metabolic interaction affecting human drug metabolism
-
Clayton, T.A., Baker, D., Lindon, J.C., Everett, J.R., Nicholson, J.K., Pharmacometabonomic identification of a significant host-microbiome metabolic interaction affecting human drug metabolism. Proc Natl Acad Sci U S A 106:34 (2009), 14728–14733.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, Issue.34
, pp. 14728-14733
-
-
Clayton, T.A.1
Baker, D.2
Lindon, J.C.3
Everett, J.R.4
Nicholson, J.K.5
-
54
-
-
84948451779
-
Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy
-
Sivan, A., Corrales, L., Hubert, N., et al. Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy. Science 350:6264 (2015), 1084–1089.
-
(2015)
Science
, vol.350
, Issue.6264
, pp. 1084-1089
-
-
Sivan, A.1
Corrales, L.2
Hubert, N.3
-
55
-
-
84948461699
-
Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota
-
Vétizou, M., Pitt, J.M., Daillère, R., et al. Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota. Science 350:6264 (2015), 1079–1084.
-
(2015)
Science
, vol.350
, Issue.6264
, pp. 1079-1084
-
-
Vétizou, M.1
Pitt, J.M.2
Daillère, R.3
-
56
-
-
78149295964
-
Alleviating cancer drug toxicity by inhibiting a bacterial enzyme
-
Wallace, B.D., Wang, H., Lane, K.T., et al. Alleviating cancer drug toxicity by inhibiting a bacterial enzyme. Science 330:6005 (2010), 831–835.
-
(2010)
Science
, vol.330
, Issue.6005
, pp. 831-835
-
-
Wallace, B.D.1
Wang, H.2
Lane, K.T.3
-
57
-
-
84941647822
-
Host genetic variation impacts microbiome composition across human body sites
-
Blekhman, R., Goodrich, J.K., Huang, K., et al. Host genetic variation impacts microbiome composition across human body sites. Genome Biol, 16, 2015, 191.
-
(2015)
Genome Biol
, vol.16
, pp. 191
-
-
Blekhman, R.1
Goodrich, J.K.2
Huang, K.3
-
58
-
-
85021320590
-
Metformin alters the gut microbiome of individuals with treatment-naive type 2 diabetes, contributing to the therapeutic effects of the drug
-
Wu, H., Esteve, E., Tremaroli, V., et al. Metformin alters the gut microbiome of individuals with treatment-naive type 2 diabetes, contributing to the therapeutic effects of the drug. Nat Med 23:7 (2017), 850–858.
-
(2017)
Nat Med
, vol.23
, Issue.7
, pp. 850-858
-
-
Wu, H.1
Esteve, E.2
Tremaroli, V.3
-
59
-
-
0036233475
-
Cardiotoxicity of fluoroquinolones
-
Rubinstein, E., Camm, J., Cardiotoxicity of fluoroquinolones. J Antimicrob Chemother 49:4 (2002), 593–596.
-
(2002)
J Antimicrob Chemother
, vol.49
, Issue.4
, pp. 593-596
-
-
Rubinstein, E.1
Camm, J.2
-
60
-
-
12344295260
-
Neuropsychiatric reactions to drugs: an analysis of spontaneous reports from general practitioners in Italy
-
Galatti, L., Giustini, S.E., Sessa, A., et al. Neuropsychiatric reactions to drugs: an analysis of spontaneous reports from general practitioners in Italy. Pharmacol Res 51:3 (2005), 211–216.
-
(2005)
Pharmacol Res
, vol.51
, Issue.3
, pp. 211-216
-
-
Galatti, L.1
Giustini, S.E.2
Sessa, A.3
-
61
-
-
15044347274
-
Antibiotics as Anti-Inflammatory and Immunomodulatory Agents
-
Birkhäuser Boston
-
Rubin, B.K., Tamaoki, J., Antibiotics as Anti-Inflammatory and Immunomodulatory Agents. 2005, Birkhäuser, Boston.
-
(2005)
-
-
Rubin, B.K.1
Tamaoki, J.2
-
62
-
-
84878886096
-
The human microbiome is a source of therapeutic drug targets
-
Wallace, B.D., Redinbo, M.R., The human microbiome is a source of therapeutic drug targets. Curr Opin Chem Biol 17:3 (2013), 379–384.
-
(2013)
Curr Opin Chem Biol
, vol.17
, Issue.3
, pp. 379-384
-
-
Wallace, B.D.1
Redinbo, M.R.2
-
63
-
-
84950297830
-
Non-lethal inhibition of gut microbial trimethylamine production for the treatment of atherosclerosis
-
Wang, Z., Roberts, A.B., Buffa, J.A., et al. Non-lethal inhibition of gut microbial trimethylamine production for the treatment of atherosclerosis. Cell 163:7 (2015), 1585–1595.
-
(2015)
Cell
, vol.163
, Issue.7
, pp. 1585-1595
-
-
Wang, Z.1
Roberts, A.B.2
Buffa, J.A.3
-
64
-
-
84968732849
-
Alterations in fecal microbiota composition by probiotic supplementation in healthy adults: a systematic review of randomized controlled trials
-
Kristensen, N.B., Bryrup, T., Allin, K.H., Nielsen, T., Hansen, T.H., Pedersen, O., Alterations in fecal microbiota composition by probiotic supplementation in healthy adults: a systematic review of randomized controlled trials. Genome Med, 8(1), 2016, 52.
-
(2016)
Genome Med
, vol.8
, Issue.1
, pp. 52
-
-
Kristensen, N.B.1
Bryrup, T.2
Allin, K.H.3
Nielsen, T.4
Hansen, T.H.5
Pedersen, O.6
-
65
-
-
84959314003
-
Probiotics modulated gut microbiota suppresses hepatocellular carcinoma growth in mice
-
Li, J., Sung, C.Y., Lee, N., et al. Probiotics modulated gut microbiota suppresses hepatocellular carcinoma growth in mice. Proc Natl Acad Sci U S A 113:9 (2016), E1306–E1315.
-
(2016)
Proc Natl Acad Sci U S A
, vol.113
, Issue.9
, pp. E1306-E1315
-
-
Li, J.1
Sung, C.Y.2
Lee, N.3
-
66
-
-
84887534847
-
Bioengineered probiotics, a strategic approach to control enteric infections
-
Amalaradjou, M.A., Bhunia, A.K., Bioengineered probiotics, a strategic approach to control enteric infections. Bioengineered 4:6 (2013), 379–387.
-
(2013)
Bioengineered
, vol.4
, Issue.6
, pp. 379-387
-
-
Amalaradjou, M.A.1
Bhunia, A.K.2
-
67
-
-
80052484996
-
Synthetic biology moving into the clinic
-
Ruder, W.C., Lu, T., Collins, J.J., Synthetic biology moving into the clinic. Science 333:6047 (2011), 1248–1252.
-
(2011)
Science
, vol.333
, Issue.6047
, pp. 1248-1252
-
-
Ruder, W.C.1
Lu, T.2
Collins, J.J.3
-
68
-
-
85018496784
-
Tunable Expression Tools Enable Single-Cell Strain Distinction in the Gut Microbiome
-
Whitaker, W.R., Shepherd, E.S., Sonnenburg, J.L., Tunable Expression Tools Enable Single-Cell Strain Distinction in the Gut Microbiome. Cell 169:3 (2017), 538–546.e512.
-
(2017)
Cell
, vol.169
, Issue.3
, pp. 538-546.e512
-
-
Whitaker, W.R.1
Shepherd, E.S.2
Sonnenburg, J.L.3
-
69
-
-
84931295496
-
Update on fecal microbiota transplantation 2015: indications, methodologies, mechanisms, and outlook
-
Kelly, C.R., Kahn, S., Kashyap, P., et al. Update on fecal microbiota transplantation 2015: indications, methodologies, mechanisms, and outlook. Gastroenterology 149:1 (2015), 223–237.
-
(2015)
Gastroenterology
, vol.149
, Issue.1
, pp. 223-237
-
-
Kelly, C.R.1
Kahn, S.2
Kashyap, P.3
-
70
-
-
84931469899
-
Fecal microbiota transplantation induces remission in patients with active ulcerative colitis in a randomized controlled trial
-
Moayyedi, P., Surette, M.G., Kim, P.T., et al. Fecal microbiota transplantation induces remission in patients with active ulcerative colitis in a randomized controlled trial. Gastroenterology 149:1 (2015), 102–109.e106.
-
(2015)
Gastroenterology
, vol.149
, Issue.1
, pp. 102-109.e106
-
-
Moayyedi, P.1
Surette, M.G.2
Kim, P.T.3
-
71
-
-
84890685902
-
A diet low in FODMAPs reduces symptoms of irritable bowel syndrome
-
Halmos, E.P., Power, V.A., Shepherd, S.J., Gibson, P.R., Muir, J.G., A diet low in FODMAPs reduces symptoms of irritable bowel syndrome. Gastroenterology 146:1 (2014), 67–75.e65.
-
(2014)
Gastroenterology
, vol.146
, Issue.1
, pp. 67-75.e65
-
-
Halmos, E.P.1
Power, V.A.2
Shepherd, S.J.3
Gibson, P.R.4
Muir, J.G.5
-
72
-
-
85042028845
-
-
Multivariate modelling of faecal bacterial profiles of patients with IBS predicts responsiveness to a diet low in FODMAPs [published online ahead of print April 17]. Gut.
-
Bennet SM, Böhn L, Störsrud S, et al. Multivariate modelling of faecal bacterial profiles of patients with IBS predicts responsiveness to a diet low in FODMAPs [published online ahead of print April 17, 2017]. Gut. https://doi.org/10.1136/gutjnl-2016-313128.
-
(2017)
-
-
Bennet, S.M.1
Böhn, L.2
Störsrud, S.3
-
73
-
-
84947812071
-
Personalized nutrition by prediction of glycemic responses
-
Zeevi, D., Korem, T., Zmora, N., et al. Personalized nutrition by prediction of glycemic responses. Cell 163:5 (2015), 1079–1094.
-
(2015)
Cell
, vol.163
, Issue.5
, pp. 1079-1094
-
-
Zeevi, D.1
Korem, T.2
Zmora, N.3
-
74
-
-
85020283977
-
Bread affects clinical parameters and induces gut microbiome-associated personal glycemic responses
-
Korem, T., Zeevi, D., Zmora, N., et al. Bread affects clinical parameters and induces gut microbiome-associated personal glycemic responses. Cell Metab 25:6 (2017), 1243–1253.e1245.
-
(2017)
Cell Metab
, vol.25
, Issue.6
, pp. 1243-1253.e1245
-
-
Korem, T.1
Zeevi, D.2
Zmora, N.3
-
75
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu, G.D., Chen, J., Hoffmann, C., et al. Linking long-term dietary patterns with gut microbial enterotypes. Science 334:6052 (2011), 105–108.
-
(2011)
Science
, vol.334
, Issue.6052
, pp. 105-108
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
-
76
-
-
84954099831
-
Diet-induced extinctions in the gut microbiota compound over generations
-
Sonnenburg, E.D., Smits, S.A., Tikhonov, M., Higginbottom, S.K., Wingreen, N.S., Sonnenburg, J.L., Diet-induced extinctions in the gut microbiota compound over generations. Nature 529:7585 (2016), 212–215.
-
(2016)
Nature
, vol.529
, Issue.7585
, pp. 212-215
-
-
Sonnenburg, E.D.1
Smits, S.A.2
Tikhonov, M.3
Higginbottom, S.K.4
Wingreen, N.S.5
Sonnenburg, J.L.6
-
77
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
David, L.A., Maurice, C.F., Carmody, R.N., et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature 505:7484 (2014), 559–563.
-
(2014)
Nature
, vol.505
, Issue.7484
, pp. 559-563
-
-
David, L.A.1
Maurice, C.F.2
Carmody, R.N.3
-
78
-
-
84949491459
-
Dietary fiber-induced improvement in glucose metabolism is associated with increased abundance of Prevotella
-
Kovatcheva-Datchary, P., Nilsson, A., Akrami, R., et al. Dietary fiber-induced improvement in glucose metabolism is associated with increased abundance of Prevotella. Cell Metab 22:6 (2015), 971–982.
-
(2015)
Cell Metab
, vol.22
, Issue.6
, pp. 971-982
-
-
Kovatcheva-Datchary, P.1
Nilsson, A.2
Akrami, R.3
-
79
-
-
85027983832
-
Individualized responses of gut microbiota to dietary intervention modeled in humanized mice
-
Smits, S.A., Marcobal, A., Higginbottom, S., Sonnenburg, J.L., Kashyap, P.C., Individualized responses of gut microbiota to dietary intervention modeled in humanized mice. mSystems, 1(5), 2016.
-
(2016)
mSystems
, vol.1
, Issue.5
-
-
Smits, S.A.1
Marcobal, A.2
Higginbottom, S.3
Sonnenburg, J.L.4
Kashyap, P.C.5
|