-
1
-
-
84859326308
-
Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing
-
Harris S.R., Clarke I.N., Seth-Smith H.M.B., et al. Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing. Nat Genet 2012, 44:413-419.
-
(2012)
Nat Genet
, vol.44
, pp. 413-419
-
-
Harris, S.R.1
Clarke, I.N.2
Seth-Smith, H.M.B.3
-
2
-
-
38649083439
-
Vancomycin-resistant Staphylococcus aureus isolates associated with Inc18-like vanA plasmids in Michigan
-
Zhu W., Clark N.C., Mcdougal L.K., Hageman J., Mcdonald L.C., Patel J.B. Vancomycin-resistant Staphylococcus aureus isolates associated with Inc18-like vanA plasmids in Michigan. Antimicrob Agents Chemother 2008, 54:452-457.
-
(2008)
Antimicrob Agents Chemother
, vol.54
, pp. 452-457
-
-
Zhu, W.1
Clark, N.C.2
Mcdougal, L.K.3
Hageman, J.4
Mcdonald, L.C.5
Patel, J.B.6
-
3
-
-
77957372885
-
Dissemination of an Enterococcus Inc18-like vanA plasmid associated with vancomycin-resistant Staphylococcus aureus
-
Zhu W., Murray P.R., Huskins W.C., et al. Dissemination of an Enterococcus Inc18-like vanA plasmid associated with vancomycin-resistant Staphylococcus aureus. Antimicrob Agents Chemother 2010, 52:4314-4320.
-
(2010)
Antimicrob Agents Chemother
, vol.52
, pp. 4314-4320
-
-
Zhu, W.1
Murray, P.R.2
Huskins, W.C.3
-
4
-
-
84863338394
-
Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease
-
Young B.C., Golubchik T., Batty E.M., et al. Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease. Proc Natl Acad Sci USA 2012, 109:4550-4555.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 4550-4555
-
-
Young, B.C.1
Golubchik, T.2
Batty, E.M.3
-
5
-
-
84857741366
-
Characterisation of Clostridium difficile hospital ward-based transmission using extensive epidemiological data and molecular typing
-
Walker A.S., Eyre D.W., Wyllie D.H., et al. Characterisation of Clostridium difficile hospital ward-based transmission using extensive epidemiological data and molecular typing. PLoS Med 2011, 9:e1001172.
-
(2011)
PLoS Med
, vol.9
-
-
Walker, A.S.1
Eyre, D.W.2
Wyllie, D.H.3
-
6
-
-
28044446133
-
The role of nasal carriage in Staphylococcus aureus infections
-
Wertheim H.F., Melles D.C., Vos M.C., et al. The role of nasal carriage in Staphylococcus aureus infections. Lancet Infect Dis 2005, 5:751-762.
-
(2005)
Lancet Infect Dis
, vol.5
, pp. 751-762
-
-
Wertheim, H.F.1
Melles, D.C.2
Vos, M.C.3
-
7
-
-
0002474085
-
Healthy carriage of Staphylococcus aureus: its prevalence and importance
-
Williams R.E. Healthy carriage of Staphylococcus aureus: its prevalence and importance. Bacteriol Rev 1963, 27:56-71.
-
(1963)
Bacteriol Rev
, vol.27
, pp. 56-71
-
-
Williams, R.E.1
-
8
-
-
38949169581
-
Prediction of methicillin-resistant Staphylococcus aureus involvement in disease sites by concomitant nasal sampling
-
Robicsek A., Suseno M., Beaumont J.L., Thomson R.B., Peterson L.R. Prediction of methicillin-resistant Staphylococcus aureus involvement in disease sites by concomitant nasal sampling. J Clin Microbiol 2008, 46:588-592.
-
(2008)
J Clin Microbiol
, vol.46
, pp. 588-592
-
-
Robicsek, A.1
Suseno, M.2
Beaumont, J.L.3
Thomson, R.B.4
Peterson, L.R.5
-
9
-
-
4344571589
-
Risk and outcome of nosocomial Staphylococcus aureus bacteraemia in nasal carriers versus non-carriers
-
Wertheim H.F., Vos M.C., Ott A., et al. Risk and outcome of nosocomial Staphylococcus aureus bacteraemia in nasal carriers versus non-carriers. Lancet 2004, 364:703-705.
-
(2004)
Lancet
, vol.364
, pp. 703-705
-
-
Wertheim, H.F.1
Vos, M.C.2
Ott, A.3
-
10
-
-
78650792286
-
The management of Staphylococcus aureus bacteremia in the United Kingdom and Vietnam: a multi-centre evaluation
-
United Kingdom Clinical Infection Research Group (UKCIRG)
-
Thwaites G.E. The management of Staphylococcus aureus bacteremia in the United Kingdom and Vietnam: a multi-centre evaluation. PLoS One 2010, 5:e14170. United Kingdom Clinical Infection Research Group (UKCIRG).
-
(2010)
PLoS One
, vol.5
-
-
Thwaites, G.E.1
-
11
-
-
0035925904
-
Whole genome sequencing of meticillin-resistant Staphylococcus aureus
-
Kuroda M., Ohta T., Uchiyama I., et al. Whole genome sequencing of meticillin-resistant Staphylococcus aureus. Lancet 2001, 357:1225-1240.
-
(2001)
Lancet
, vol.357
, pp. 1225-1240
-
-
Kuroda, M.1
Ohta, T.2
Uchiyama, I.3
-
12
-
-
30744457635
-
Microarrays reveal that each of the ten dominant lineages of Staphylococcus aureus has a unique combination of surface-associated and regulatory genes
-
Lindsay J.A., Moore C.E., Day N.P., et al. Microarrays reveal that each of the ten dominant lineages of Staphylococcus aureus has a unique combination of surface-associated and regulatory genes. J Bacteriol 2006, 188:669-676.
-
(2006)
J Bacteriol
, vol.188
, pp. 669-676
-
-
Lindsay, J.A.1
Moore, C.E.2
Day, N.P.3
-
13
-
-
0037853350
-
How clonal is Staphylococcus aureus?
-
Feil E.J., Cooper J.E., Grundmann H., et al. How clonal is Staphylococcus aureus?. J Bacteriol 2003, 185:3307-3316.
-
(2003)
J Bacteriol
, vol.185
, pp. 3307-3316
-
-
Feil, E.J.1
Cooper, J.E.2
Grundmann, H.3
-
14
-
-
58549084151
-
A comparison of homologous recombination rates in bacteria and archaea
-
Vos M., Didelot X. A comparison of homologous recombination rates in bacteria and archaea. ISME J 2009, 3:199-208.
-
(2009)
ISME J
, vol.3
, pp. 199-208
-
-
Vos, M.1
Didelot, X.2
-
15
-
-
33344458092
-
Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data
-
Pérez-Losada M., Browne E.B., Madsen A., Wirth T., Viscidi R.P., Crandall K.A. Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data. Infect Genet Evol 2006, 6:97-112.
-
(2006)
Infect Genet Evol
, vol.6
, pp. 97-112
-
-
Pérez-Losada, M.1
Browne, E.B.2
Madsen, A.3
Wirth, T.4
Viscidi, R.P.5
Crandall, K.A.6
-
16
-
-
33644613784
-
The impact of homologous recombination on the generation of diversity in bacteria
-
Hanage W.P., Fraser C., Spratt B.G. The impact of homologous recombination on the generation of diversity in bacteria. J Theor Biol 2006, 239:210-219.
-
(2006)
J Theor Biol
, vol.239
, pp. 210-219
-
-
Hanage, W.P.1
Fraser, C.2
Spratt, B.G.3
-
17
-
-
34249027580
-
Inference of bacterial microevolution using multilocus sequence data
-
Didelot X., Falush D. Inference of bacterial microevolution using multilocus sequence data. Genetics 2007, 175:1251-1266.
-
(2007)
Genetics
, vol.175
, pp. 1251-1266
-
-
Didelot, X.1
Falush, D.2
-
18
-
-
77954143123
-
Impact of recombination on bacterial evolution
-
Didelot X., Maiden M.C. Impact of recombination on bacterial evolution. Trends Microbiol 2010, 18:315-322.
-
(2010)
Trends Microbiol
, vol.18
, pp. 315-322
-
-
Didelot, X.1
Maiden, M.C.2
-
19
-
-
79251573854
-
Inference of homologous recombination in bacteria using whole-genome sequences
-
Didelot X., Lawson D., Darling A., Falush D. Inference of homologous recombination in bacteria using whole-genome sequences. Genetics 2010, 186:1435-1449.
-
(2010)
Genetics
, vol.186
, pp. 1435-1449
-
-
Didelot, X.1
Lawson, D.2
Darling, A.3
Falush, D.4
-
20
-
-
33746631363
-
Sau1: a novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages
-
Waldron D.E., Lindsay J.A. Sau1: a novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages. J Bacteriol 2006, 188:5578-5585.
-
(2006)
J Bacteriol
, vol.188
, pp. 5578-5585
-
-
Waldron, D.E.1
Lindsay, J.A.2
-
21
-
-
0028073304
-
Antibiogram-resistogram typing scheme for methicillin-resistant Staphylococcus aureus
-
Rossney A.S., Coleman D.C., Keane C.T. Antibiogram-resistogram typing scheme for methicillin-resistant Staphylococcus aureus. J Med Microbiol 1994, 41:430-440.
-
(1994)
J Med Microbiol
, vol.41
, pp. 430-440
-
-
Rossney, A.S.1
Coleman, D.C.2
Keane, C.T.3
-
22
-
-
0034025192
-
Methicillin-resistant Staphylococcus aureus typing methods: which should be the international standard?
-
Weller T.M. Methicillin-resistant Staphylococcus aureus typing methods: which should be the international standard?. J Hosp Infect 2000, 44:160-172.
-
(2000)
J Hosp Infect
, vol.44
, pp. 160-172
-
-
Weller, T.M.1
-
23
-
-
13144252236
-
Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms
-
Maiden M.C., Bygraves J.A., Feil E., et al. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci USA 1998, 95:3140-3145.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 3140-3145
-
-
Maiden, M.C.1
Bygraves, J.A.2
Feil, E.3
-
24
-
-
0034005677
-
Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus
-
Enright M.C., Day N.P., Davies C.E., Peacock S.J., Spratt B.G. Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus. J Clin Microbiol 2000, 38:1008-1015.
-
(2000)
J Clin Microbiol
, vol.38
, pp. 1008-1015
-
-
Enright, M.C.1
Day, N.P.2
Davies, C.E.3
Peacock, S.J.4
Spratt, B.G.5
-
25
-
-
1342311493
-
Multilocus sequence typing and the evolution of methicillin-resistant Staphylococcus aureus
-
Robinson D.A., Enright M.C. Multilocus sequence typing and the evolution of methicillin-resistant Staphylococcus aureus. Clin Microbiol Infect 2004, 10:92-97.
-
(2004)
Clin Microbiol Infect
, vol.10
, pp. 92-97
-
-
Robinson, D.A.1
Enright, M.C.2
-
26
-
-
0037188519
-
The evolutionary history of methicillin-resistant Staphylococcus aureus (MRSA)
-
Enright M.C., Robinson D.A., Randle G., Feil E.J., Grundmann H., Spratt B.G. The evolutionary history of methicillin-resistant Staphylococcus aureus (MRSA). Proc Natl Acad Sci USA 2002, 99:7687-7692.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 7687-7692
-
-
Enright, M.C.1
Robinson, D.A.2
Randle, G.3
Feil, E.J.4
Grundmann, H.5
Spratt, B.G.6
-
27
-
-
1342304133
-
EBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
-
Feil E.J., Li B.C., Aanensen D.M., Hanage W.P., Spratt B.G. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol 2004, 186:1518-1530.
-
(2004)
J Bacteriol
, vol.186
, pp. 1518-1530
-
-
Feil, E.J.1
Li, B.C.2
Aanensen, D.M.3
Hanage, W.P.4
Spratt, B.G.5
-
28
-
-
0032881231
-
Evaluation of protein A gene polymorphic region DNA sequencing for typing of Staphylococcus aureus strains
-
Shopsin B., Gomez M., Montgomery S.O., et al. Evaluation of protein A gene polymorphic region DNA sequencing for typing of Staphylococcus aureus strains. J Clin Microbiol 1999, 37:3556-3563.
-
(1999)
J Clin Microbiol
, vol.37
, pp. 3556-3563
-
-
Shopsin, B.1
Gomez, M.2
Montgomery, S.O.3
-
29
-
-
38949108667
-
Spa typing of Staphylococcus aureus as a frontline tool in epidemiological typing
-
Strommenger B., Braulke C., Heuck D., et al. spa typing of Staphylococcus aureus as a frontline tool in epidemiological typing. J Clin Microbiol 2008, 46:574-581.
-
(2008)
J Clin Microbiol
, vol.46
, pp. 574-581
-
-
Strommenger, B.1
Braulke, C.2
Heuck, D.3
-
30
-
-
0025889079
-
Genomic DNA fingerprinting by pulsed-field gel electrophoresis as an epidemiological marker for study of nosocomial infections caused by methicillin-resistant Staphylococcus aureus
-
Ichiyama S., Ohta M., Shimokata K., Kato N., Takeuchi J. Genomic DNA fingerprinting by pulsed-field gel electrophoresis as an epidemiological marker for study of nosocomial infections caused by methicillin-resistant Staphylococcus aureus. J Clin Microbiol 1991, 29:2690-2695.
-
(1991)
J Clin Microbiol
, vol.29
, pp. 2690-2695
-
-
Ichiyama, S.1
Ohta, M.2
Shimokata, K.3
Kato, N.4
Takeuchi, J.5
-
31
-
-
0242677610
-
Pulsed-field gel electrophoresis typing of oxacillin-resistant Staphylococcus aureus isolates from the United States: establishing a national database
-
McDougal L.K., Steward C.D., Killgore G.E., Chaitram J.M., McAllister S.K., Tenover F.C. Pulsed-field gel electrophoresis typing of oxacillin-resistant Staphylococcus aureus isolates from the United States: establishing a national database. J Clin Microbiol 2003, 41:5113-5120.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 5113-5120
-
-
McDougal, L.K.1
Steward, C.D.2
Killgore, G.E.3
Chaitram, J.M.4
McAllister, S.K.5
Tenover, F.C.6
-
32
-
-
38149098343
-
Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains
-
Faria N.A., Carrico J.A., Oliveira D.C., Ramirez M., de Lencastre H. Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains. J Clin Microbiol 2008, 46:136-144.
-
(2008)
J Clin Microbiol
, vol.46
, pp. 136-144
-
-
Faria, N.A.1
Carrico, J.A.2
Oliveira, D.C.3
Ramirez, M.4
de Lencastre, H.5
-
33
-
-
12444304190
-
New method for typing Staphylococcus aureus strains: multiple-locus variable-number tandem repeat analysis of polymorphism and genetic relationships of clinical isolates
-
Sabat A., Krzyszton-Russjan J., Strzalka W., et al. New method for typing Staphylococcus aureus strains: multiple-locus variable-number tandem repeat analysis of polymorphism and genetic relationships of clinical isolates. J Clin Microbiol 2003, 41:1801-1804.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 1801-1804
-
-
Sabat, A.1
Krzyszton-Russjan, J.2
Strzalka, W.3
-
34
-
-
22144489176
-
Comparison of multiple-locus variable-number tandem-repeat analysis with pulsed-field gel electrophoresis, spa typing, and multilocus sequence typing for clonal characterization of Staphylococcus aureus isolates
-
Malachowa N., Sabat A., Gniadkowski M., et al. Comparison of multiple-locus variable-number tandem-repeat analysis with pulsed-field gel electrophoresis, spa typing, and multilocus sequence typing for clonal characterization of Staphylococcus aureus isolates. J Clin Microbiol 2005, 43:3095-3100.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 3095-3100
-
-
Malachowa, N.1
Sabat, A.2
Gniadkowski, M.3
-
35
-
-
70349647709
-
Improved multiple-locus variable-number tandem-repeat assay for Staphylococcus aureus genotyping, providing a highly informative technique together with strong phylogenetic value
-
Pourcel C., Hormigos K., Onteniente L., Sakwinska O., Deurenberg R.H., Vergnaud G. Improved multiple-locus variable-number tandem-repeat assay for Staphylococcus aureus genotyping, providing a highly informative technique together with strong phylogenetic value. J Clin Microbiol 2009, 47:3121-3128.
-
(2009)
J Clin Microbiol
, vol.47
, pp. 3121-3128
-
-
Pourcel, C.1
Hormigos, K.2
Onteniente, L.3
Sakwinska, O.4
Deurenberg, R.H.5
Vergnaud, G.6
-
36
-
-
34547641543
-
Multiple-locus variable-number tandem-repeat assay analysis of methicillin-resistant Staphylococcus aureus strains
-
Tenover F.C., Vaughn R.R., McDougal L.K., Fosheim G.E., McGowan J.E.Jr. Multiple-locus variable-number tandem-repeat assay analysis of methicillin-resistant Staphylococcus aureus strains. J Clin Microbiol 2007, 45:2215-2219.
-
(2007)
J Clin Microbiol
, vol.45
, pp. 2215-2219
-
-
Tenover, F.C.1
Vaughn, R.R.2
McDougal, L.K.3
Fosheim, G.E.4
McGowan, J.E.J.5
-
37
-
-
64549092847
-
Multiple-locus variable number tandem repeat analysis of Staphylococcus aureus: comparison with pulsed-field gel electrophoresis and spa-typing
-
Schouls L.M., Spalburg E.C., van Luit M., et al. Multiple-locus variable number tandem repeat analysis of Staphylococcus aureus: comparison with pulsed-field gel electrophoresis and spa-typing. PLoS One 2009, 4:e5082.
-
(2009)
PLoS One
, vol.4
-
-
Schouls, L.M.1
Spalburg, E.C.2
van Luit, M.3
-
38
-
-
0034038098
-
A new class of genetic element, Staphylococcus cassette chromosome mec, encodes methicillin resistance in Staphylococcus aureus
-
Katayama Y., Ito T., Hiramatsu K. A new class of genetic element, Staphylococcus cassette chromosome mec, encodes methicillin resistance in Staphylococcus aureus. Antimicrob Agents Chemother 2000, 44:1549-1555.
-
(2000)
Antimicrob Agents Chemother
, vol.44
, pp. 1549-1555
-
-
Katayama, Y.1
Ito, T.2
Hiramatsu, K.3
-
39
-
-
33644637478
-
Staphylococcal cassette chromosome mec (SCCmec) typing of methicillin-resistant Staphylococcus aureus strains isolated in 11 Asian countries: a proposal for a new nomenclature for SCCmec elements
-
Chongtrakool P., Ito T., Ma X.X., et al. Staphylococcal cassette chromosome mec (SCCmec) typing of methicillin-resistant Staphylococcus aureus strains isolated in 11 Asian countries: a proposal for a new nomenclature for SCCmec elements. Antimicrob Agents Chemother 2006, 50:1001-1012.
-
(2006)
Antimicrob Agents Chemother
, vol.50
, pp. 1001-1012
-
-
Chongtrakool, P.1
Ito, T.2
Ma, X.X.3
-
40
-
-
71249083467
-
Classification of staphylococcal cassette chromosome mec (SCCmec): guidelines for reporting novel SCCmec elements
-
International Working Group on the Classification of Staphylococcal Cassette Chromosome Elements (IWG - SCC)
-
Classification of staphylococcal cassette chromosome mec (SCCmec): guidelines for reporting novel SCCmec elements. Antimicrob Agents Chemother 2009, 53:4961-4967. International Working Group on the Classification of Staphylococcal Cassette Chromosome Elements (IWG - SCC).
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 4961-4967
-
-
-
41
-
-
84875463071
-
Matrix-assisted laser desorption/ionization mass spectrometry of biopolymers
-
Hillenkamp F., Karas M., Beavis R.C., Chait B.T. Matrix-assisted laser desorption/ionization mass spectrometry of biopolymers. Anal Chem 1991, 63:1193A-1203A.
-
(1991)
Anal Chem
, vol.63
-
-
Hillenkamp, F.1
Karas, M.2
Beavis, R.C.3
Chait, B.T.4
-
42
-
-
78649634917
-
MALDI-TOF MS fingerprinting allows for discrimination of major methicillin-resistant Staphylococcus aureus lineages
-
Wolters M., Rohde H., Maier T., et al. MALDI-TOF MS fingerprinting allows for discrimination of major methicillin-resistant Staphylococcus aureus lineages. Int J Med Microbiol 2011, 301:64-68.
-
(2011)
Int J Med Microbiol
, vol.301
, pp. 64-68
-
-
Wolters, M.1
Rohde, H.2
Maier, T.3
-
45
-
-
72849144434
-
Sequencing technologies - the next generation
-
Metzker M.L. Sequencing technologies - the next generation. Nat Rev Genet 2010, 11:31-46.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
46
-
-
53649108801
-
The potential and challenges of nanopore sequencing
-
Branton D., Deamer D.W., Marziali A., et al. The potential and challenges of nanopore sequencing. Nat Biotechnol 2008, 26:1146-1153.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1146-1153
-
-
Branton, D.1
Deamer, D.W.2
Marziali, A.3
-
47
-
-
79956314887
-
Genotype and SNP calling from next-generation sequencing data
-
Nielsen R., Paul J.S., Albrechtsen A., Song Y.S. Genotype and SNP calling from next-generation sequencing data. Nat Rev Genet 2011, 12:443-451.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 443-451
-
-
Nielsen, R.1
Paul, J.S.2
Albrechtsen, A.3
Song, Y.S.4
-
48
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino D.R., Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008, 18:821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
49
-
-
77956279237
-
Assembly of large genomes using second-generation sequencing
-
Schatz M.C., Delcher A.L., Salzberg S.L. Assembly of large genomes using second-generation sequencing. Genome Res 2010, 20:1165-1173.
-
(2010)
Genome Res
, vol.20
, pp. 1165-1173
-
-
Schatz, M.C.1
Delcher, A.L.2
Salzberg, S.L.3
-
50
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
Eid J., Fehr A., Gray J., et al. Real-time DNA sequencing from single polymerase molecules. Science 2009, 323:133-138.
-
(2009)
Science
, vol.323
, pp. 133-138
-
-
Eid, J.1
Fehr, A.2
Gray, J.3
-
51
-
-
73649129652
-
Whole genomes: sequence, microarray and systems biology
-
Caister Academic Press, Caister, UK, J. Lindsay (Ed.)
-
Holden M.T.G., Lindsay J.A. Whole genomes: sequence, microarray and systems biology. Staphylococcus: molecular genetics 2008, 1-28. Caister Academic Press, Caister, UK. 1st ed. J. Lindsay (Ed.).
-
(2008)
Staphylococcus: molecular genetics
, pp. 1-28
-
-
Holden, M.T.G.1
Lindsay, J.A.2
-
52
-
-
84859436530
-
NCBI reference sequences (RefSeq): current status, new features and genome annotation policy
-
Pruitt K.D., Tatusova T., Brown G.R., Maglott D.R. NCBI reference sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res 2012, 40:D130-D135.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
53
-
-
75649084906
-
Evolution of MRSA during hospital transmission and intercontinental spread
-
Harris S.R., Feil E.J., Holden M.T., et al. Evolution of MRSA during hospital transmission and intercontinental spread. Science 2010, 327:469-474.
-
(2010)
Science
, vol.327
, pp. 469-474
-
-
Harris, S.R.1
Feil, E.J.2
Holden, M.T.3
-
54
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 2007, 7:214.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
55
-
-
84861896440
-
Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus
-
McAdam P.R., Templeton K.E., Edwards G.F., et al. Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus. Proc Natl Acad Sci USA 2012, 109:9107-9112.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 9107-9112
-
-
McAdam, P.R.1
Templeton, K.E.2
Edwards, G.F.3
-
56
-
-
84862318037
-
A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance
-
Eyre D.W., Golubchik T., Gordon N.C., et al. A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance. BMJ Open 2012, 2:e001124.
-
(2012)
BMJ Open
, vol.2
-
-
Eyre, D.W.1
Golubchik, T.2
Gordon, N.C.3
-
57
-
-
84862199752
-
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak
-
Köser C.U., Holden M.T., Ellington M.J., et al. Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak. N Engl J Med 2012, 366:2267-2275.
-
(2012)
N Engl J Med
, vol.366
, pp. 2267-2275
-
-
Köser, C.U.1
Holden, M.T.2
Ellington, M.J.3
-
58
-
-
77952168929
-
Evolutionary dynamics of Clostridium difficile over short and long time scales
-
He M., Sebaihia M., Lawley T.D., et al. Evolutionary dynamics of Clostridium difficile over short and long time scales. Proc Natl Acad Sci USA 2010, 107:7527-7532.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 7527-7532
-
-
He, M.1
Sebaihia, M.2
Lawley, T.D.3
-
59
-
-
78650854393
-
The origin of the Haitian cholera outbreak strain
-
Chin C.-S., Sorenson J., Harris J.B., et al. The origin of the Haitian cholera outbreak strain. N Engl J Med 2011, 364:33-42.
-
(2011)
N Engl J Med
, vol.364
, pp. 33-42
-
-
Chin, C.-S.1
Sorenson, J.2
Harris, J.B.3
-
60
-
-
0038823524
-
The genome sequence of the SARS-associated coronavirus
-
Marra M.A., Jones S.J., Astell C.R., et al. The genome sequence of the SARS-associated coronavirus. Science 2003, 300:1399-1404.
-
(2003)
Science
, vol.300
, pp. 1399-1404
-
-
Marra, M.A.1
Jones, S.J.2
Astell, C.R.3
-
61
-
-
83255171089
-
2011 German Escherichia coli O104:H4 outbreak: whole-genome phylogeny without alignment
-
Cheung M.K., Li L., Nong W., Kwan H.S. 2011 German Escherichia coli O104:H4 outbreak: whole-genome phylogeny without alignment. BMC Res Notes 2011, 4:533.
-
(2011)
BMC Res Notes
, vol.4
, pp. 533
-
-
Cheung, M.K.1
Li, L.2
Nong, W.3
Kwan, H.S.4
-
62
-
-
79951995822
-
Whole-genome sequencing and social-network analysis of a tuberculosis outbreak
-
Gardy J.L., Johnston J.C., Ho Sui S.J., et al. Whole-genome sequencing and social-network analysis of a tuberculosis outbreak. N Engl J Med 2011, 364:730-739.
-
(2011)
N Engl J Med
, vol.364
, pp. 730-739
-
-
Gardy, J.L.1
Johnston, J.C.2
Ho Sui, S.J.3
-
63
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schäffer A.A., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
-
64
-
-
78650827616
-
BIGSdb: Scalable analysis of bacterial genome variation at the population level
-
Jolley K.A., Maiden M.C. BIGSdb: Scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 2010, 11:595.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 595
-
-
Jolley, K.A.1
Maiden, M.C.2
-
65
-
-
33746556194
-
Genome-wide association mapping in bacteria?
-
Falush D., Bowden R. Genome-wide association mapping in bacteria?. Trends Microbiol 2006, 14:353-355.
-
(2006)
Trends Microbiol
, vol.14
, pp. 353-355
-
-
Falush, D.1
Bowden, R.2
-
66
-
-
80052396609
-
Adaptive evolution of Staphylococcus aureus during chronic endobronchial infection of a cystic fibrosis patient
-
McAdam P.R., Holmes A., Templeton K.E., Fitzgerald J.R. Adaptive evolution of Staphylococcus aureus during chronic endobronchial infection of a cystic fibrosis patient. PLoS One 2011, 6:e24301.
-
(2011)
PLoS One
, vol.6
-
-
McAdam, P.R.1
Holmes, A.2
Templeton, K.E.3
Fitzgerald, J.R.4
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