Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data

Genome Medicine

Volumn 7, Issue 1, 2015, Pages

  Sahl, Jason W ^a,b   Schupp, James M ^a   Rasko, David A ^c   Colman, Rebecca E ^a   Foster, Jeffrey T ^b,d   Keim, Paul ^a,b  

^a TRANSLATIONAL GENOMICS RESEARCH INSTITUTE   (United States)

^b NORTHERN ARIZONA UNIVERSITY   (United States)

^c UNIVERSITY OF MARYLAND SCHOOL OF MEDICINE   (United States)

^d UNIVERSITY OF NEW HAMPSHIRE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ACCURACY; ALLELE; ARTICLE; BACTERIAL GENETICS; BACTERIAL GENOME; BACTERIAL STRAIN; CONTROLLED STUDY; GENE SEQUENCE; GENETIC DATABASE; GENOME ANALYSIS; GENOTYPE; INTERNET; METAGENOMICS; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84934275888     PISSN: None     EISSN: 1756994X     Source Type: Journal    
DOI: 10.1186/s13073-015-0176-9     Document Type: Article

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