Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abundance of Prevotella

Cell Metabolism

Volumn 22, Issue 6, 2015, Pages 971-982

  Kovatcheva Datchary, Petia ^a   Nilsson, Anne ^b   Akrami, Rozita ^a   Lee, Ying Shiuan ^a   De Vadder, Filipe ^a   Arora, Tulika ^a   Hallen, Anna ^a   Martens, Eric ^c   Björck, Inger ^b   Bäckhed, Fredrik ^a,d  

^a UNIVERSITY OF GOTHENBURG   (Sweden)

^b LUND UNIVERSITY   (Sweden)

^c UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^d Capital Region   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCOGEN; POLYSACCHARIDE; GLUCOSE; GLUCOSE BLOOD LEVEL; HYDROGEN; INSULIN; RNA 16S;

ADULT; AGED; ARTICLE; BACTEROIDES; BARLEY; BREAD; CONTROLLED STUDY; CROSSOVER PROCEDURE; DIET; DIETARY FIBER; DONOR; FEMALE; GLUCOSE METABOLISM; GLYCOGEN LIVER LEVEL; HUMAN; INTESTINE FLORA; MALE; METAGENOMICS; MICROFLORA; MOUSE; NONHUMAN; PREVOTELLA; PRIORITY JOURNAL; RANDOMIZED CONTROLLED TRIAL; ANALYSIS; ANIMAL; BLOOD; C57BL MOUSE; CHEMISTRY; CLINICAL TRIAL; DRUG EFFECTS; FECES; GENETICS; GLUCOSE BLOOD LEVEL; GROWTH, DEVELOPMENT AND AGING; INTESTINE; LIVER; METABOLISM; MICROBIOLOGY; MIDDLE AGED; PHARMACOLOGY; PHYSIOLOGY;

AGED; ANIMALS; BACTEROIDES; BLOOD GLUCOSE; CROSS-OVER STUDIES; DIETARY FIBER; FECES; FEMALE; GLUCOSE; GLYCOGEN; HUMANS; HYDROGEN; INSULIN; INTESTINES; LIVER; MALE; MICE; MICE, INBRED C57BL; MICROBIOTA; MIDDLE AGED; PREVOTELLA; RNA, RIBOSOMAL, 16S;

EID: 84949491459     PISSN: 15504131     EISSN: 19327420     Source Type: Journal    
DOI: 10.1016/j.cmet.2015.10.001     Document Type: Article

References (56)

1. M. Arumugam, J. Raes, E. Pelletier, D. Le Paslier, T. Yamada, D.R. Mende, G.R. Fernandes, J. Tap, T. Bruls, J.-M. Batto, et al. MetaHIT Consortium Enterotypes of the human gut microbiome Nature 473 2011 174 180
2. F. Bäckhed, H. Ding, T. Wang, L.V. Hooper, G.Y. Koh, A. Nagy, C.F. Semenkovich, and J.I. Gordon The gut microbiota as an environmental factor that regulates fat storage Proc. Natl. Acad. Sci. USA 101 2004 15718 15723
3. F. Bäckhed, J.K. Manchester, C.F. Semenkovich, and J.I. Gordon Mechanisms underlying the resistance to diet-induced obesity in germ-free mice Proc. Natl. Acad. Sci. USA 104 2007 979 984
4. Y. Benjamini, and Y. Hochberg Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing Journal of the Royal Statistical Society. Series B (Methodological) 57 1995 289 300
5. A.M. Bolger, M. Lohse, and B. Usadel Trimmomatic: a flexible trimmer for Illumina sequence data Bioinformatics 30 2014 2114 2120
6. M. Bollen, S. Keppens, and W. Stalmans Specific features of glycogen metabolism in the liver Biochem. J. 336 1998 19 31
7. A. Cotillard, S.P. Kennedy, L.C. Kong, E. Prifti, N. Pons, E. Le Chatelier, M. Almeida, B. Quinquis, F. Levenez, N. Galleron, et al. ANR MicroObes consortium Dietary intervention impact on gut microbial gene richness Nature 500 2013 585 588
8. L.A. David, C.F. Maurice, R.N. Carmody, D.B. Gootenberg, J.E. Button, B.E. Wolfe, A.V. Ling, A.S. Devlin, Y. Varma, M.A. Fischbach, and et al. Diet rapidly and reproducibly alters the human gut microbiome Nature 505 2014 559 563
9. C. De Filippo, D. Cavalieri, M. Di Paola, M. Ramazzotti, J.B. Poullet, S. Massart, S. Collini, G. Pieraccini, and P. Lionetti Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa Proc. Natl. Acad. Sci. USA 107 2010 14691 14696
10. F. De Vadder, P. Kovatcheva-Datchary, D. Goncalves, J. Vinera, C. Zitoun, A. Duchampt, F. Bäckhed, and G. Mithieux Microbiota-generated metabolites promote metabolic benefits via gut-brain neural circuits Cell 156 2014 84 96
11. S.E. Denman, N.W. Tomkins, and C.S. McSweeney Quantitation and diversity analysis of ruminal methanogenic populations in response to the antimethanogenic compound bromochloromethane FEMS Microbiol. Ecol. 62 2007 313 322
12. E.M. Dewulf, P.D. Cani, S.P. Claus, S. Fuentes, P.G. Puylaert, A.M. Neyrinck, L.B. Bindels, W.M. de Vos, G.R. Gibson, J.-P. Thissen, and N.M. Delzenne Insight into the prebiotic concept: lessons from an exploratory, double blind intervention study with inulin-type fructans in obese women Gut 62 2013 1112 1121
13. D. Dodd, Y.-H. Moon, K. Swaminathan, R.I. Mackie, and I.K.O. Cann Transcriptomic analyses of xylan degradation by Prevotella bryantii and insights into energy acquisition by xylanolytic bacteroidetes J. Biol. Chem. 285 2010 30261 30273
14. D. Dodd, R.I. Mackie, and I.K.O. Cann Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes Mol. Microbiol. 79 2011 292 304
15. S.H. Duncan, A. Belenguer, G. Holtrop, A.M. Johnstone, H.J. Flint, and G.E. Lobley Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces Appl. Environ. Microbiol. 73 2007 1073 1078
16. A. El Kaoutari, F. Armougom, J.I. Gordon, D. Raoult, and B. Henrissat The abundance and variety of carbohydrate-active enzymes in the human gut microbiota Nat. Rev. Microbiol. 11 2013 497 504
17. H.J. Flint, K.P. Scott, S.H. Duncan, P. Louis, and E. Forano Microbial degradation of complex carbohydrates in the gut Gut Microbes 3 2012 289 306
18. J.P. Harmon, N.A. Moran, and A.R. Ives Species response to environmental change: impacts of food web interactions and evolution Science 323 2009 1347 1350
19. Y. Izumida, N. Yahagi, Y. Takeuchi, M. Nishi, A. Shikama, A. Takarada, Y. Masuda, M. Kubota, T. Matsuzaka, Y. Nakagawa, and et al. Glycogen shortage during fasting triggers liver-brain-adipose neurocircuitry to facilitate fat utilization Nat. Commun. 4 2013 2316 2320
20. E.V. Johansson, A.C. Nilsson, E.M. Östman, and I.M. Björck Effects of indigestible carbohydrates in barley on glucose metabolism, appetite and voluntary food intake over 16 h in healthy adults Nutr. J. 12 2013 46
21. F.H. Karlsson, V. Tremaroli, I. Nookaew, G. Bergström, C.J. Behre, B. Fagerberg, J. Nielsen, and F. Bäckhed Gut metagenome in European women with normal, impaired and diabetic glucose control Nature 498 2013 99 103
22. R.A. Koeth, Z. Wang, B.S. Levison, J.A. Buffa, E. Org, B.T. Sheehy, E.B. Britt, X. Fu, Y. Wu, L. Li, and et al. Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis Nat. Med. 19 2013 576 585
23. V. Kofia, R. Isserlin, A. Buchan, and G. Bader Social Network: a Cytoscape app for visualizing co-publication networks F1000Res. 4 2015 481
24. O. Koren, D. Knights, A. Gonzalez, L. Waldron, N. Segata, R. Knight, C. Huttenhower, and R.E. Ley A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets PLoS Comput. Biol. 9 2013 e1002863
25. K. Korpela, H.J. Flint, A.M. Johnstone, J. Lappi, K. Poutanen, E. Dewulf, N. Delzenne, W.M. de Vos, and A. Salonen Gut microbiota signatures predict host and microbiota responses to dietary interventions in obese individuals PLoS ONE 9 2014 e90702
26. P. Kovatcheva-Datchary, and T. Arora Nutrition, the gut microbiome and the metabolic syndrome Best Pract. Res. Clin. Gastroenterol. 27 2013 59 72
27. J.W. Lampe, S.L. Navarro, M.A.J. Hullar, and A. Shojaie Inter-individual differences in response to dietary intervention: integrating omics platforms towards personalised dietary recommendations Proc. Nutr. Soc. 72 2013 207 218
28. E. Le Chatelier, T. Nielsen, J. Qin, E. Prifti, F. Hildebrand, G. Falony, M. Almeida, M. Arumugam, J.-M. Batto, S. Kennedy, et al. MetaHIT consortium Richness of human gut microbiome correlates with metabolic markers Nature 500 2013 541 546
29. E.C.M. Leitch, A.W. Walker, S.H. Duncan, G. Holtrop, and H.J. Flint Selective colonization of insoluble substrates by human faecal bacteria Environ. Microbiol. 9 2007 667 679
30. L.A. Lesniewski, S.E. Hosch, J.G. Neels, C. de Luca, M. Pashmforoush, C.N. Lumeng, S.-H. Chiang, M. Scadeng, A.R. Saltiel, and J.M. Olefsky Bone marrow-specific Cap gene deletion protects against high-fat diet-induced insulin resistance Nat. Med. 13 2007 455 462
31. C. Lozupone, M. Hamady, and R. Knight UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context BMC Bioinformatics 7 2006 371
32. J.M. Macy, L.G. Ljungdahl, and G. Gottschalk Pathway of succinate and propionate formation in Bacteroides fragilis J. Bacteriol. 134 1978 84 91
33. E.C. Martens, H.C. Chiang, and J.I. Gordon Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont Cell Host Microbe 4 2008 447 457
34. E.C. Martens, E.C. Lowe, H. Chiang, N.A. Pudlo, M. Wu, N.P. McNulty, D.W. Abbott, B. Henrissat, H.J. Gilbert, D.N. Bolam, and J.I. Gordon Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts PLoS Biol. 9 2011 e1001221
35. T. Matsuki, K. Watanabe, J. Fujimoto, Y. Miyamoto, T. Takada, K. Matsumoto, H. Oyaizu, and R. Tanaka Development of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human feces Appl. Environ. Microbiol. 68 2002 5445 5451
36. C. Menzaghi, G. Paroni, C. De Bonis, A. Coco, C. Vigna, G. Miscio, P. Lanna, V. Tassi, S. Bacci, and V. Trischitta The protein tyrosine phosphatase receptor type f (PTPRF) locus is associated with coronary artery disease in type 2 diabetes J. Intern. Med. 263 2008 653 654
37. F. Meyer, D. Paarmann, M. D'Souza, R. Olson, E.M. Glass, M. Kubal, T. Paczian, A. Rodriguez, R. Stevens, A. Wilke, and et al. The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes BMC Bioinformatics 9 2008 386
38. A. Nilsson, Y. Granfeldt, E. Ostman, T. Preston, and I. Björck Effects of GI and content of indigestible carbohydrates of cereal-based evening meals on glucose tolerance at a subsequent standardised breakfast Eur. J. Clin. Nutr. 60 2006 1092 1099
39. A. Nilsson, E. Ostman, T. Preston, and I. Björck Effects of GI vs content of cereal fibre of the evening meal on glucose tolerance at a subsequent standardized breakfast Eur. J. Clin. Nutr. 62 2008 712 720
40. A.C. Nilsson, E.V. Johansson-Boll, and I.M. Björck Increased gut hormones and insulin sensitivity index following a 3-d intervention with a barley kernel-based product: a randomised cross-over study in healthy middle-aged subjects Br. J. Nutr. Aug 11 2015 1 9
41. G. Pfleiderer Glycogen: determination with amyloglucosidase 1974 Bergmeyer HU Deerfield Beach, FL, US
42. M. Pimentel, R.P. Gunsalus, S.S.C. Rao, and H. Zhang Methanogens in Human Health and Disease Am. J. Gastroenterol. 1 Suppl 2012 28 33
43. J. Qin, Y. Li, Z. Cai, S. Li, J. Zhu, F. Zhang, S. Liang, W. Zhang, Y. Guan, D. Shen, and et al. A metagenome-wide association study of gut microbiota in type 2 diabetes Nature 490 2012 55 60
44. R Core Team R: A language and enviorment for statistical computing 2015 R Foundation for Statistical Computing Vienna, Austria http://www.R-project.org/
45. S. Rampelli, S.L. Schnorr, C. Consolandi, S. Turroni, M. Severgnini, C. Peano, P. Brigidi, A.N. Crittenden, A.G. Henry, and M. Candela Metagenome Sequencing of the Hadza Hunter-Gatherer Gut Microbiota Curr. Biol. 25 2015 1682 1693
46. A. Salonen, J. Nikkilä, J. Jalanka-Tuovinen, O. Immonen, M. Rajilić-Stojanović, R.A. Kekkonen, A. Palva, and W.M. de Vos Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis J. Microbiol. Methods 81 2010 127 134
47. A. Salonen, L. Lahti, J. Salojärvi, G. Holtrop, K. Korpela, S.H. Duncan, P. Date, F. Farquharson, A.M. Johnstone, G.E. Lobley, and et al. Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men ISME J. 8 2014 2218 2230
48. B.S. Samuel, and J.I. Gordon A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism Proc. Natl. Acad. Sci. USA 103 2006 10011 10016
49. V. Tremaroli, and F. Bäckhed Functional interactions between the gut microbiota and host metabolism Nature 489 2012 242 249
50. A.W. Walker, J. Ince, S.H. Duncan, L.M. Webster, G. Holtrop, X. Ze, D. Brown, M.D. Stares, P. Scott, A. Bergerat, and et al. Dominant and diet-responsive groups of bacteria within the human colonic microbiota ISME J. 5 2011 220 230
51. Z. Wang, E. Klipfell, B.J. Bennett, R. Koeth, B.S. Levison, B. Dugar, A.E. Feldstein, E.B. Britt, X. Fu, Y.-M. Chung, and et al. Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease Nature 472 2011 57 63
52. G.D. Wu, J. Chen, C. Hoffmann, K. Bittinger, Y.-Y. Chen, S.A. Keilbaugh, M. Bewtra, D. Knights, W.A. Walters, R. Knight, and et al. Linking long-term dietary patterns with gut microbial enterotypes Science 334 2011 105 108
53. G.D. Wu, C. Compher, E.Z. Chen, S.A. Smith, R.D. Shah, K. Bittinger, C. Chehoud, L.G. Albenberg, L. Nessel, E. Gilroy, and et al. Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production Gut 2014 10.1136/gutjnl-2014-308209 gutjnl-2014-308209
54. J. Xu, M.K. Bjursell, J. Himrod, S. Deng, L.K. Carmichael, H.C. Chiang, L.V. Hooper, and J.I. Gordon A genomic view of the human-Bacteroides thetaiotaomicron symbiosis Science 299 2003 2074 2076
55. X. Ze, S.H. Duncan, P. Louis, and H.J. Flint Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon ISME J. 6 2012 1535 1543
56. H. Zhang, J.K. DiBaise, A. Zuccolo, D. Kudrna, M. Braidotti, Y. Yu, P. Parameswaran, M.D. Crowell, R. Wing, B.E. Rittmann, and R. Krajmalnik-Brown Human gut microbiota in obesity and after gastric bypass Proc. Natl. Acad. Sci. USA 106 2009 2365 2370