Epidemiological surveillance and typing methods to track antibiotic resistant strains using high throughput sequencing

Methods in Molecular Biology

Volumn 1520, Issue , 2017, Pages 331-355

  Machado, Miguel Paulo ^a   Ribeiro Gonçalves, Bruno ^a   Silva, Mickael ^a   Ramirez, Mário ^a   Carriço, João André ^a  

^a INSTITUTO DE MEDICINA MOLECULAR   (Portugal)

Author keywords

Antibiotic resistance; Gene finding; High throughput sequencing; Microbial typing; Online databases

Indexed keywords

CLINDAMYCIN; DNA FRAGMENT; ERYTHROMYCIN; GENTAMICIN; LINEZOLID; METICILLIN; PENICILLIN DERIVATIVE; PSEUDOMONIC ACID; TOBRAMYCIN; VANCOMYCIN;

ALGORITHM; ALLELE; ANTIBIOTIC RESISTANCE; BACTERIAL GENOME; BACTERIAL STRAIN; BIOINFORMATICS; CONSENSUS SEQUENCE; DATA BASE; HIGH THROUGHPUT SEQUENCING; INFORMATION CENTER; METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS; MINIMUM INHIBITORY CONCENTRATION; MULTILOCUS SEQUENCE TYPING; NONHUMAN; SEROTYPE; SOFTWARE; STAPHYLOCOCCUS AUREUS; STREPTOCOCCUS PNEUMONIAE; BACTERIAL GENE; BACTERIUM; EPIDEMIOLOGICAL MONITORING; GENETICS; PROCEDURES;

BACTERIA; DRUG RESISTANCE, MICROBIAL; EPIDEMIOLOGICAL MONITORING; GENES, BACTERIAL; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MULTILOCUS SEQUENCE TYPING; SOFTWARE;

EID: 84996946612     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-6634-9_20     Document Type: Chapter

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