-
1
-
-
79956301905
-
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
-
Muegge BD, Kuczynski J, Knights D, et al. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 2011;332:970-4.
-
(2011)
Science
, vol.332
, pp. 970-974
-
-
Muegge, B.D.1
Kuczynski, J.2
Knights, D.3
-
2
-
-
84862162269
-
Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples
-
Segata N, Haake SK, Mannon P, et al. Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples. Genome Biol 2012;13:R42.
-
(2012)
Genome Biol
, vol.13
, pp. R42
-
-
Segata, N.1
Haake, S.K.2
Mannon, P.3
-
3
-
-
84862590343
-
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates
-
Zoetendal EG, Raes J, van den Bogert B, et al. The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates. ISME J 2012;6:1415-26.
-
(2012)
ISME J
, vol.6
, pp. 1415-1426
-
-
Zoetendal, E.G.1
Raes, J.2
Van Den Bogert, B.3
-
4
-
-
84871124415
-
A metagenomic insight into our gut's microbiome
-
Lepage P, Leclerc MC, Joossens M, et al. A metagenomic insight into our gut's microbiome. Gut 2013;62:146-58.
-
(2013)
Gut
, vol.62
, pp. 146-158
-
-
Lepage, P.1
Leclerc, M.C.2
Joossens, M.3
-
5
-
-
70349488325
-
Low counts of Faecalibacterium prausnitzii in colitis microbiota
-
Sokol H, Seksik P, Furet JP, et al. Low counts of Faecalibacterium prausnitzii in colitis microbiota. Inflamm Bowel Dis 2009;15:1183-9.
-
(2009)
Inflamm Bowel Dis
, vol.15
, pp. 1183-1189
-
-
Sokol, H.1
Seksik, P.2
Furet, J.P.3
-
6
-
-
84902179457
-
Decline in presumptively protective gut bacterial species and metabolites are paradoxically associated with disease improvement in pediatric Crohn's disease during enteral nutrition
-
Gerasimidis K, Bertz M, Hanske L, et al. Decline in presumptively protective gut bacterial species and metabolites are paradoxically associated with disease improvement in pediatric Crohn's disease during enteral nutrition. Inflamm Bowel Dis 2014;20:861-71.
-
(2014)
Inflamm Bowel Dis
, vol.20
, pp. 861-871
-
-
Gerasimidis, K.1
Bertz, M.2
Hanske, L.3
-
7
-
-
84896713690
-
Colonization of the human gut by E. Coli and colorectal cancer risk
-
Bonnet M, Buc E, Sauvanet P, et al. Colonization of the human gut by E. coli and colorectal cancer risk. Clin Cancer Res 2014;20:859-67.
-
(2014)
Clin Cancer Res
, vol.20
, pp. 859-867
-
-
Bonnet, M.1
Buc, E.2
Sauvanet, P.3
-
8
-
-
84890069587
-
Dominant fecal microbiota in newly diagnosed untreated inflammatory bowel disease patients
-
Thorkildsen LT, Nwosu FC, Avershina E, et al. Dominant fecal microbiota in newly diagnosed untreated inflammatory bowel disease patients. Gastroenterol Res Pract 2013;2013:636785.
-
(2013)
Gastroenterol Res Pract
, vol.2013
, pp. 636785
-
-
Thorkildsen, L.T.1
Nwosu, F.C.2
Avershina, E.3
-
9
-
-
84927692256
-
The first 1000 cultured species of the human gastrointestinal microbiota
-
Rajilic-Stojanovic M, de Vos WM. The first 1000 cultured species of the human gastrointestinal microbiota. FEMS Microbiol Rev 2014;38:996-1047.
-
(2014)
FEMS Microbiol Rev
, vol.38
, pp. 996-1047
-
-
Rajilic-Stojanovic, M.1
De Vos, W.M.2
-
10
-
-
77649119543
-
Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene
-
Louis P, Young P, Holtrop G, et al. Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene. Environ Microbiol 2010;12:304-14.
-
(2010)
Environ Microbiol
, vol.12
, pp. 304-314
-
-
Louis, P.1
Young, P.2
Holtrop, G.3
-
12
-
-
84877356167
-
Some are more equal than others: The role of "keystone" species in the degradation of recalcitrant substrates
-
Ze X, Le Mougen F, Duncan SH, et al. Some are more equal than others: the role of "keystone" species in the degradation of recalcitrant substrates. Gut Microbes 2013;4:236-40.
-
(2013)
Gut Microbes
, vol.4
, pp. 236-240
-
-
Ze, X.1
Le Mougen, F.2
Duncan, S.H.3
-
13
-
-
80054111810
-
Fermentation in the human large intestine: Its physiologic consequences and the potential contribution of prebiotics
-
Macfarlane GT, Macfarlane S. Fermentation in the human large intestine: its physiologic consequences and the potential contribution of prebiotics. J Clin Gastroenterol 2011;45(Suppl):S120-7.
-
(2011)
J Clin Gastroenterol
, vol.45
, pp. S120-S127
-
-
Macfarlane, G.T.1
Macfarlane, S.2
-
14
-
-
84890550163
-
Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation
-
Arpaia N, Campbell C, Fan X, et al. Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation. Nature 2013;504:451-5.
-
(2013)
Nature
, vol.504
, pp. 451-455
-
-
Arpaia, N.1
Campbell, C.2
Fan, X.3
-
16
-
-
84876563088
-
Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk
-
Tang WH, Wang Z, Levison BS, et al. Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk. New Engl J Med 2013;368:1575-84.
-
(2013)
New Engl J Med
, vol.368
, pp. 1575-1584
-
-
Tang, W.H.1
Wang, Z.2
Levison, B.S.3
-
17
-
-
84905235179
-
Minireview: Gut microbiota: The neglected endocrine organ
-
Clarke G, Stilling RM, Kennedy PJ, et al. Minireview: gut microbiota: the neglected endocrine organ. Molec Endocrinol 2014;28:1221-38.
-
(2014)
Molec Endocrinol
, vol.28
, pp. 1221-1238
-
-
Clarke, G.1
Stilling, R.M.2
Kennedy, P.J.3
-
18
-
-
84942113450
-
Diet-microbe interactions in the gut
-
Elsevier Science Publishing Co. Inc
-
Tuohy K, Del Rio D, eds. Diet-microbe interactions in the gut. Effects on human health and disease. Elsevier Science Publishing Co. Inc., 2014.
-
(2014)
Effects on Human Health and Disease
-
-
Tuohy, K.1
Del Rio, D.2
-
19
-
-
84868636856
-
Cholesterol lowering and inhibition of sterol absorption by Lactobacillus reuteri NCIMB 30242: A randomized controlled trial
-
Jones ML, Martoni CJ, Prakash S. Cholesterol lowering and inhibition of sterol absorption by Lactobacillus reuteri NCIMB 30242: a randomized controlled trial. Eur J Clin Nutr 2012;66:1234-41.
-
(2012)
Eur J Clin Nutr
, vol.66
, pp. 1234-1241
-
-
Jones, M.L.1
Martoni, C.J.2
Prakash, S.3
-
20
-
-
84874597916
-
Stable isotope-and mass spectrometry-based metabolomics as tools in drug metabolism: A study expanding tempol pharmacology
-
Li F, Pang X, Krausz KW, et al. Stable isotope-and mass spectrometry-based metabolomics as tools in drug metabolism: a study expanding tempol pharmacology. J Proteome Res 2013;12:1369-76.
-
(2013)
J Proteome Res
, vol.12
, pp. 1369-1376
-
-
Li, F.1
Pang, X.2
Krausz, K.W.3
-
21
-
-
12144262315
-
Diet-derived phenols in plasma and tissues and their implications for health
-
Clifford MN. Diet-derived phenols in plasma and tissues and their implications for health. Planta Medica 2004;70:1103-14.
-
(2004)
Planta Medica
, vol.70
, pp. 1103-1114
-
-
Clifford, M.N.1
-
22
-
-
84861552107
-
Influence of red wine polyphenols and ethanol on the gut microbiota ecology and biochemical biomarkers
-
Queipo-Ortuno MI, Boto-Ordonez M, Murri M, et al. Influence of red wine polyphenols and ethanol on the gut microbiota ecology and biochemical biomarkers. Am J Clin Nutr 2012;95:1323-34.
-
(2012)
Am J Clin Nutr
, vol.95
, pp. 1323-1334
-
-
Queipo-Ortuno, M.I.1
Boto-Ordonez, M.2
Murri, M.3
-
24
-
-
33845901507
-
Microbial ecology: Human gut microbes associated with obesity
-
Ley RE, Turnbaugh PJ, Klein S, et al. Microbial ecology: human gut microbes associated with obesity. Nature 2006;444:1022-3.
-
(2006)
Nature
, vol.444
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
-
25
-
-
56549122798
-
Human colonic microbiota associated with diet, obesity and weight loss
-
Duncan SH, Lobley GE, Holtrop G, et al. Human colonic microbiota associated with diet, obesity and weight loss. Int J Obes 2008;32:1720-4.
-
(2008)
Int J Obes
, vol.32
, pp. 1720-1724
-
-
Duncan, S.H.1
Lobley, G.E.2
Holtrop, G.3
-
26
-
-
84864722033
-
Gut microbiota composition correlates with diet and health in the elderly
-
Claesson MJ, Jeffery IB, Conde S, et al. Gut microbiota composition correlates with diet and health in the elderly. Nature 2012;488:178-84.
-
(2012)
Nature
, vol.488
, pp. 178-184
-
-
Claesson, M.J.1
Jeffery, I.B.2
Conde, S.3
-
27
-
-
47249093665
-
Accuracy of body mass index in diagnosing obesity in the adult general population
-
Romero-Corral A, Somers VK, Sierra-Johnson J, et al. Accuracy of body mass index in diagnosing obesity in the adult general population. Int J Obesity 2008;32:959-66.
-
(2008)
Int J Obesity
, vol.32
, pp. 959-966
-
-
Romero-Corral, A.1
Somers, V.K.2
Sierra-Johnson, J.3
-
28
-
-
84865055757
-
Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome
-
Zupancic ML, Cantarel BL, Liu Z, et al. Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome. PLoS ONE 2012; 7:e43052.
-
(2012)
PLoS ONE
, vol.7
-
-
Zupancic, M.L.1
Cantarel, B.L.2
Liu, Z.3
-
29
-
-
77649171169
-
The distinction of metabolically 'healthy' from 'unhealthy' obese individuals
-
Bluher M. The distinction of metabolically 'healthy' from 'unhealthy' obese individuals. Curr Opin Lipidol 2010;21:38-43.
-
(2010)
Curr Opin Lipidol
, vol.21
, pp. 38-43
-
-
Bluher, M.1
-
30
-
-
84867074831
-
A metagenome-wide association study of gut microbiota in type 2 diabetes
-
Qin J, Li Y, Cai Z, et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 2012;490:55-60.
-
(2012)
Nature
, vol.490
, pp. 55-60
-
-
Qin, J.1
Li, Y.2
Cai, Z.3
-
31
-
-
84878709716
-
Gut metagenome in European women with normal, impaired and diabetic glucose control
-
Karlsson FH, Tremaroli V, Nookaew I, et al. Gut metagenome in European women with normal, impaired and diabetic glucose control. Nature 2013;498:99-103.
-
(2013)
Nature
, vol.498
, pp. 99-103
-
-
Karlsson, F.H.1
Tremaroli, V.2
Nookaew, I.3
-
32
-
-
84883110880
-
Richness of human gut microbiome correlates with metabolic markers
-
Le Chatelier E, Nielsen T, Qin J, et al. Richness of human gut microbiome correlates with metabolic markers. Nature 2013;500:541-6.
-
(2013)
Nature
, vol.500
, pp. 541-546
-
-
Le Chatelier, E.1
Nielsen, T.2
Qin, J.3
-
33
-
-
84866738529
-
Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome
-
e7
-
Vrieze A, Van Nood E, Holleman F, et al. Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome. Gastroenterol 2012;143:913-6.e7.
-
(2012)
Gastroenterol
, vol.143
, pp. 913-916
-
-
Vrieze, A.1
Van Nood, E.2
Holleman, F.3
-
34
-
-
84883057637
-
Dietary intervention impact on gut microbial gene richness
-
Cotillard A, Kennedy SP, Kong LC, et al. Dietary intervention impact on gut microbial gene richness. Nature 2013;500:585-8.
-
(2013)
Nature
, vol.500
, pp. 585-588
-
-
Cotillard, A.1
Kennedy, S.P.2
Kong, L.C.3
-
35
-
-
84920971125
-
Molecular ecological tools to decipher the role of our microbial mass in obesity
-
Hermes GD, Zoetendal EG, Smidt H. Molecular ecological tools to decipher the role of our microbial mass in obesity. Benef Microbes 2015;6:61-81.
-
(2015)
Benef Microbes
, vol.6
, pp. 61-81
-
-
Hermes, G.D.1
Zoetendal, E.G.2
Smidt, H.3
-
36
-
-
44149106177
-
Immunology of the gut and liver: A love/ hate relationship
-
Adams DH, Eksteen B, Curbishley SM. Immunology of the gut and liver: a love/ hate relationship. Gut 2008;57:838-48.
-
(2008)
Gut
, vol.57
, pp. 838-848
-
-
Adams, D.H.1
Eksteen, B.2
Curbishley, S.M.3
-
39
-
-
68949148889
-
Increased intestinal permeability and tight junction alterations in nonalcoholic fatty liver disease
-
Miele L, Valenza V, La Torre G, et al. Increased intestinal permeability and tight junction alterations in nonalcoholic fatty liver disease. Hepatol 2009;49: 1877-87.
-
(2009)
Hepatol
, vol.49
, pp. 1877-1887
-
-
Miele, L.1
Valenza, V.2
La Torre, G.3
-
40
-
-
0020065283
-
Hepatic steatosis after intestinal bypass-prevention and reversal by metronidazole, irrespective of protein-calorie malnutrition
-
Drenick EJ, Fisler J, Johnson D. Hepatic steatosis after intestinal bypass-prevention and reversal by metronidazole, irrespective of protein-calorie malnutrition. Gastroenterol 1982;82:535-48.
-
(1982)
Gastroenterol
, vol.82
, pp. 535-548
-
-
Drenick, E.J.1
Fisler, J.2
Johnson, D.3
-
41
-
-
84856957894
-
Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity
-
Henao-Mejia J, Elinav E, Jin C, et al. Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity. Nature 2012;482:179-85.
-
(2012)
Nature
, vol.482
, pp. 179-185
-
-
Henao-Mejia, J.1
Elinav, E.2
Jin, C.3
-
42
-
-
84879245628
-
Fecal microbiome and volatile organic compound metabolome in obese humans with nonalcoholic fatty liver disease
-
e1-3
-
Raman M, Ahmed I, Gillevet PM, et al. Fecal microbiome and volatile organic compound metabolome in obese humans with nonalcoholic fatty liver disease. Clin Gastroenterol Hepatol 2013;11:868-75.e1-3.
-
(2013)
Clin Gastroenterol Hepatol
, vol.11
, pp. 868-875
-
-
Raman, M.1
Ahmed, I.2
Gillevet, P.M.3
-
43
-
-
84873296091
-
Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: A connection between endogenous alcohol and NASH
-
Zhu L, Baker SS, Gill C, et al. Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: a connection between endogenous alcohol and NASH. Hepatol 2013;57:601-9.
-
(2013)
Hepatol
, vol.57
, pp. 601-609
-
-
Zhu, L.1
Baker, S.S.2
Gill, C.3
-
44
-
-
0027404469
-
Severity of liver injury in experimental alcoholic liver disease
-
Nanji AA, Khettry U, Sadrzadeh SM, et al. Severity of liver injury in experimental alcoholic liver disease. Correlation with plasma endotoxin, prostaglandin E2, leukotriene B4, and thromboxane B2. Am J Pathol 1993;142:367-73.
-
(1993)
Correlation with Plasma Endotoxin, Prostaglandin E2, Leukotriene B4, and Thromboxane B2. Am J Pathol
, vol.142
, pp. 367-373
-
-
Nanji, A.A.1
Khettry, U.2
Sadrzadeh, S.M.3
-
45
-
-
77449131229
-
Small-intestinal bacterial overgrowth in cirrhosis is related to the severity of liver disease
-
Pande C, Kumar A, Sarin SK. Small-intestinal bacterial overgrowth in cirrhosis is related to the severity of liver disease. Aliment Pharmacol Ther 2009;29: 1273-81.
-
(2009)
Aliment Pharmacol Ther
, vol.29
, pp. 1273-1281
-
-
Pande, C.1
Kumar, A.2
Sarin, S.K.3
-
46
-
-
78751537350
-
Enteric dysbiosis associated with a mouse model of alcoholic liver disease
-
Yan AW, Fouts DE, Brandl J, et al. Enteric dysbiosis associated with a mouse model of alcoholic liver disease. Hepatol 2011;53:96-105.
-
(2011)
Hepatol
, vol.53
, pp. 96-105
-
-
Yan, A.W.1
Fouts, D.E.2
Brandl, J.3
-
47
-
-
84874115025
-
Bacterial translocation and changes in the intestinal microbiome associated with alcoholic liver disease
-
Yan AW, Schnabl B. Bacterial translocation and changes in the intestinal microbiome associated with alcoholic liver disease. World J Hepatol 2012;4:110-18.
-
(2012)
World J Hepatol
, vol.4
, pp. 110-118
-
-
Yan, A.W.1
Schnabl, B.2
-
48
-
-
84976206324
-
Probing the microbiota in PSC: The gut adherent microbiota of PSC-IBD is distinct to that of IBD and controls
-
Quraishi SM, Adams D, Pallen M, et al. Probing the microbiota in PSC: the gut adherent microbiota of PSC-IBD is distinct to that of IBD and controls. Hepatol 2014;60: 267A.
-
(2014)
Hepatol
, vol.60
, pp. 267A
-
-
Quraishi, S.M.1
Adams, D.2
Pallen, M.3
-
49
-
-
84937426489
-
The mucosa-associated microbiota of PSC patients is characterized by low diversity and low abundance of uncultured Clostridiales II
-
Rossen NG, Fuentes S, Boonstra K, et al. The mucosa-associated microbiota of PSC patients is characterized by low diversity and low abundance of uncultured Clostridiales II. J Crohn's Colitis 2015;9:342-8.
-
(2015)
J Crohn's Colitis
, vol.9
, pp. 342-348
-
-
Rossen, N.G.1
Fuentes, S.2
Boonstra, K.3
-
50
-
-
84887423367
-
Role of the microbiota and antibiotics in primary sclerosing cholangitis
-
Tabibian JH, Talwalkar JA, Lindor KD. Role of the microbiota and antibiotics in primary sclerosing cholangitis. BioMed Res Int 2013;2013:389537.
-
(2013)
BioMed Res Int
, vol.2013
, pp. 389537
-
-
Tabibian, J.H.1
Talwalkar, J.A.2
Lindor, K.D.3
-
51
-
-
55549136784
-
Long-term treatment of primary sclerosing cholangitis in children with oral vancomycin: An immunomodulating antibiotic
-
Davies YK, Cox KM, Abdullah BA, et al. Long-term treatment of primary sclerosing cholangitis in children with oral vancomycin: an immunomodulating antibiotic. J Pediatr Gastroenterol Nutr 2008;47:61-7.
-
(2008)
J Pediatr Gastroenterol Nutr
, vol.47
, pp. 61-67
-
-
Davies, Y.K.1
Cox, K.M.2
Abdullah, B.A.3
-
52
-
-
24744458143
-
Intestinal permeability and bacterial growth of the small bowel in patients with primary sclerosing cholangitis
-
Bjornsson E, Cederborg A, Akvist A, et al. Intestinal permeability and bacterial growth of the small bowel in patients with primary sclerosing cholangitis. Scand J Gastroenterol 2005;40:1090-4.
-
(2005)
Scand J Gastroenterol
, vol.40
, pp. 1090-1094
-
-
Bjornsson, E.1
Cederborg, A.2
Akvist, A.3
-
53
-
-
0023869711
-
Experimental portal fibrosis produced by intraportal injection of killed nonpathogenic Escherichia coli in rabbits
-
Kono K, Ohnishi K, Omata M, et al. Experimental portal fibrosis produced by intraportal injection of killed nonpathogenic Escherichia coli in rabbits. Gastroenterol 1988;94:787-96.
-
(1988)
Gastroenterol
, vol.94
, pp. 787-796
-
-
Kono, K.1
Ohnishi, K.2
Omata, M.3
-
54
-
-
43049181301
-
Liver autoimmunity triggered by microbial activation of natural killer T cells
-
Mattner J, Savage PB, Leung P, et al. Liver autoimmunity triggered by microbial activation of natural killer T cells. Cell Host Microbe 2008;3:304-15.
-
(2008)
Cell Host Microbe
, vol.3
, pp. 304-315
-
-
Mattner, J.1
Savage, P.B.2
Leung, P.3
-
56
-
-
84886999533
-
Effects of probiotics on nonalcoholic fatty liver disease: A meta-analysis
-
Ma YY, Li L, Yu CH, et al. Effects of probiotics on nonalcoholic fatty liver disease: a meta-analysis. World J Gastroenterol 2013;19:6911-18.
-
(2013)
World J Gastroenterol
, vol.19
, pp. 6911-6918
-
-
Ma, Y.Y.1
Li, L.2
Yu, C.H.3
-
57
-
-
84908127736
-
Oral probiotic VSL#3 attenuates the circulatory disturbances of patients with cirrhosis and ascites
-
Rincon D, Vaquero J, Hernando A, et al. Oral probiotic VSL#3 attenuates the circulatory disturbances of patients with cirrhosis and ascites. Liver Int 2014;34:1504-12.
-
(2014)
Liver Int
, vol.34
, pp. 1504-1512
-
-
Rincon, D.1
Vaquero, J.2
Hernando, A.3
-
58
-
-
84884414277
-
Intestinal microbiota determines development of non-alcoholic fatty liver disease in mice
-
Le Roy T, Llopis M, Lepage P, et al. Intestinal microbiota determines development of non-alcoholic fatty liver disease in mice. Gut 2013;62:1787-94.
-
(2013)
Gut
, vol.62
, pp. 1787-1794
-
-
Le Roy, T.1
Llopis, M.2
Lepage, P.3
-
59
-
-
84893110419
-
Role of the gut microbiota in inflammatory bowel disease pathogenesis: What have we learnt in the past 10 years?
-
Hold GL, Smith M, Grange C, et al. Role of the gut microbiota in inflammatory bowel disease pathogenesis: what have we learnt in the past 10 years? World J Gastroenterol 2014;20:1192-210.
-
(2014)
World J Gastroenterol
, vol.20
, pp. 1192-1210
-
-
Hold, G.L.1
Smith, M.2
Grange, C.3
-
60
-
-
44649118583
-
Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases
-
Peterson DA, Frank DN, Pace NR, et al. Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases. Cell Host Microbe 2008;3:417-27.
-
(2008)
Cell Host Microbe
, vol.3
, pp. 417-427
-
-
Peterson, D.A.1
Frank, D.N.2
Pace, N.R.3
-
61
-
-
78650973052
-
High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease
-
Walker AW, Sanderson JD, Churcher C, et al. High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease. BMC Microbiol 2011;11:7.
-
(2011)
BMC Microbiol
, vol.11
, pp. 7
-
-
Walker, A.W.1
Sanderson, J.D.2
Churcher, C.3
-
62
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
Frank DN, St Amand AL, Feldman RA, et al. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci USA 2007;104:13780-5.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 13780-13785
-
-
Frank, D.N.1
St Amand, A.L.2
Feldman, R.A.3
-
63
-
-
22144476548
-
Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease
-
Swidsinski A, Weber J, Loening-Baucke V, et al. Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease. J Clin Microbiol 2005;43:3380-9.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 3380-3389
-
-
Swidsinski, A.1
Weber, J.2
Loening-Baucke, V.3
-
64
-
-
84870824919
-
Microbiota of de-novo pediatric IBD: Increased Faecalibacterium prausnitzii and reduced bacterial diversity in Crohn's but not in ulcerative colitis
-
Hansen R, Russell RK, Reiff C, et al. Microbiota of de-novo pediatric IBD: increased Faecalibacterium prausnitzii and reduced bacterial diversity in Crohn's but not in ulcerative colitis. Am J Gastroenterol 2012;107:1913-22.
-
(2012)
Am J Gastroenterol
, vol.107
, pp. 1913-1922
-
-
Hansen, R.1
Russell, R.K.2
Reiff, C.3
-
65
-
-
30944466824
-
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
-
Manichanh C, Rigottier-Gois L, Bonnaud E, et al. Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach. Gut 2006;55:205-11.
-
(2006)
Gut
, vol.55
, pp. 205-211
-
-
Manichanh, C.1
Rigottier-Gois, L.2
Bonnaud, E.3
-
66
-
-
79959582756
-
Detection of Campylobacter concisus and other Campylobacter species in colonic biopsies from adults with ulcerative colitis
-
Mukhopadhya I, Thomson JM, Hansen R, et al. Detection of Campylobacter concisus and other Campylobacter species in colonic biopsies from adults with ulcerative colitis. PLoS ONE 2011;6:e21490.
-
(2011)
PLoS ONE
, vol.6
-
-
Mukhopadhya, I.1
Thomson, J.M.2
Hansen, R.3
-
67
-
-
34548399000
-
Host-mediated inflammation disrupts the intestinal microbiota and promotes the overgrowth of Enterobacteriaceae
-
Lupp C, Robertson ML, Wickham ME, et al. Host-mediated inflammation disrupts the intestinal microbiota and promotes the overgrowth of Enterobacteriaceae. Cell Host Microbe 2007;2:204.
-
(2007)
Cell Host Microbe
, vol.2
, pp. 204
-
-
Lupp, C.1
Robertson, M.L.2
Wickham, M.E.3
-
68
-
-
84886798301
-
E. Coli-mediated gut inflammation in genetically predisposed Crohn's disease patients
-
Barnich N, Denizot J, Darfeuille-Michaud A. E. coli-mediated gut inflammation in genetically predisposed Crohn's disease patients. Pathol Biol (Paris) 2013;61: e65-9.
-
(2013)
Pathol Biol (Paris)
, vol.61
, pp. e65-e69
-
-
Barnich, N.1
Denizot, J.2
Darfeuille-Michaud, A.3
-
69
-
-
84870322666
-
Integrated metagenomics/ metaproteomics reveals human host-microbiota signatures of Crohn's disease
-
Erickson AR, Cantarel BL, Lamendella R, et al. Integrated metagenomics/ metaproteomics reveals human host-microbiota signatures of Crohn's disease. PLoS ONE 2012;7:e49138.
-
(2012)
PLoS ONE
, vol.7
-
-
Erickson, A.R.1
Cantarel, B.L.2
Lamendella, R.3
-
70
-
-
84866549438
-
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
-
Morgan XC, Tickle TL, Sokol H, et al. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment. Genome Biol 2012;13:R79.
-
(2012)
Genome Biol
, vol.13
, pp. R79
-
-
Morgan, X.C.1
Tickle, T.L.2
Sokol, H.3
-
71
-
-
84922245262
-
Disease-specific alterations in the enteric virome in inflammatory bowel disease
-
Norman JM, Handley SA, Baldridge MT, et al. Disease-specific alterations in the enteric virome in inflammatory bowel disease. Cell 2015;160:447-60.
-
(2015)
Cell
, vol.160
, pp. 447-460
-
-
Norman, J.M.1
Handley, S.A.2
Baldridge, M.T.3
-
72
-
-
4644239296
-
Maintaining remission of ulcerative colitis with the probiotic Escherichia coli Nissle 1917 is as effective as with standard mesalazine
-
Kruis W, Fric P, Pokrotnieks J, et al. Maintaining remission of ulcerative colitis with the probiotic Escherichia coli Nissle 1917 is as effective as with standard mesalazine. Gut 2004;53:1617-23.
-
(2004)
Gut
, vol.53
, pp. 1617-1623
-
-
Kruis, W.1
Fric, P.2
Pokrotnieks, J.3
-
73
-
-
84869089859
-
Second European evidence-based consensus on the diagnosis and management of ulcerative colitis part 2: Current management
-
Dignass A, Lindsay JO, Sturm A, et al. Second European evidence-based consensus on the diagnosis and management of ulcerative colitis part 2: current management. J Crohn's Colitis 2012;6:991-1030.
-
(2012)
J Crohn's Colitis
, vol.6
, pp. 991-1030
-
-
Dignass, A.1
Lindsay, J.O.2
Sturm, A.3
-
74
-
-
77957831387
-
Treatment of relapsing mild-to-moderate ulcerative colitis with the probiotic VSL#3 as adjunctive to a standard pharmaceutical treatment: A double-blind, randomized, placebo-controlled study
-
Tursi A, Brandimarte G, Papa A, et al. Treatment of relapsing mild-to-moderate ulcerative colitis with the probiotic VSL#3 as adjunctive to a standard pharmaceutical treatment: a double-blind, randomized, placebo-controlled study. Am J Gastroenterol 2010;105:2218-27.
-
(2010)
Am J Gastroenterol
, vol.105
, pp. 2218-2227
-
-
Tursi, A.1
Brandimarte, G.2
Papa, A.3
-
75
-
-
84918584474
-
Fecal microbiota transplantation as therapy for inflammatory bowel disease: A systematic review and meta-analysis
-
Colman RJ, Rubin DT. Fecal microbiota transplantation as therapy for inflammatory bowel disease: a systematic review and meta-analysis. J Crohns Colitis 2014;8:1569-81.
-
(2014)
J Crohns Colitis
, vol.8
, pp. 1569-1581
-
-
Colman, R.J.1
Rubin, D.T.2
-
76
-
-
84931423571
-
Findings from a randomized controlled trial of fecal transplantation for patients with ulcerative colitis
-
e4
-
Rossen NG, Fuentes S, van der Spek MJ, et al. Findings from a randomized controlled trial of fecal transplantation for patients with ulcerative colitis. Gastroenterology 2015;149:110-18.e4.
-
(2015)
Gastroenterology
, vol.149
, pp. 110-118
-
-
Rossen, N.G.1
Fuentes, S.2
Van Der Spek, M.J.3
-
77
-
-
84931469899
-
Fecal microbiota transplantation induces remission in patients with active ulcerative colitis in a randomized, controlled trial
-
e6
-
Moayyedi P, Surette MG, Kim PT, et al. Fecal microbiota transplantation induces remission in patients with active ulcerative colitis in a randomized, controlled trial. Gastroenterology 2015;149:102-9.e6.
-
(2015)
Gastroenterology
, vol.149
, pp. 102-109
-
-
Moayyedi, P.1
Surette, M.G.2
Kim, P.T.3
-
78
-
-
0029079279
-
Controlled trial of metronidazole treatment for prevention of Crohn's recurrence after ileal resection
-
Rutgeerts P, Hiele M, Geboes K, et al. Controlled trial of metronidazole treatment for prevention of Crohn's recurrence after ileal resection. Gastroenterol 1995;108:1617-21.
-
(1995)
Gastroenterol
, vol.108
, pp. 1617-1621
-
-
Rutgeerts, P.1
Hiele, M.2
Geboes, K.3
-
79
-
-
33144470875
-
Clinical, microbiological, and immunological effects of fructo-oligosaccharide in patients with Crohn's disease
-
Lindsay JO, Whelan K, Stagg AJ, et al. Clinical, microbiological, and immunological effects of fructo-oligosaccharide in patients with Crohn's disease. Gut 2006;55:348-55.
-
(2006)
Gut
, vol.55
, pp. 348-355
-
-
Lindsay, J.O.1
Whelan, K.2
Stagg, A.J.3
-
80
-
-
79958221480
-
Randomised, double-blind, placebo-controlled trial of fructo-oligosaccharides in active Crohn's disease
-
Benjamin JL, Hedin CR, Koutsoumpas A, et al. Randomised, double-blind, placebo-controlled trial of fructo-oligosaccharides in active Crohn's disease. Gut 2011;60:923-9.
-
(2011)
Gut
, vol.60
, pp. 923-929
-
-
Benjamin, J.L.1
Hedin, C.R.2
Koutsoumpas, A.3
-
81
-
-
0038185270
-
Prophylaxis of pouchitis onset with probiotic therapy: A double-blind, placebo-controlled trial
-
Gionchetti P, Rizzello F, Helwig U, et al. Prophylaxis of pouchitis onset with probiotic therapy: a double-blind, placebo-controlled trial. Gastroenterol 2003;124:1202-9.
-
(2003)
Gastroenterol
, vol.124
, pp. 1202-1209
-
-
Gionchetti, P.1
Rizzello, F.2
Helwig, U.3
-
82
-
-
84893687483
-
Effect of probiotics on inducing remission and maintaining therapy in ulcerative colitis, Crohn's disease, and pouchitis: Meta-analysis of randomized controlled trials
-
Shen J, Zuo ZX, Mao AP. Effect of probiotics on inducing remission and maintaining therapy in ulcerative colitis, Crohn's disease, and pouchitis: meta-analysis of randomized controlled trials. Inflamm Bowel Dis 2014;20:21-35.
-
(2014)
Inflamm Bowel Dis
, vol.20
, pp. 21-35
-
-
Shen, J.1
Zuo, Z.X.2
Mao, A.P.3
-
83
-
-
84867192879
-
Intestinal inflammation targets cancer-inducing activity of the microbiota
-
Arthur JC, Perez-Chanona E, Muhlbauer M, et al. Intestinal inflammation targets cancer-inducing activity of the microbiota. Science 2012;338:120-3.
-
(2012)
Science
, vol.338
, pp. 120-123
-
-
Arthur, J.C.1
Perez-Chanona, E.2
Muhlbauer, M.3
-
84
-
-
69949120571
-
A human colonic commensal promotes colon tumorigenesis via activation of T helper type 17T cell responses
-
Wu S, Rhee KJ, Albesiano E, et al. A human colonic commensal promotes colon tumorigenesis via activation of T helper type 17T cell responses. Nat Med 2009;15:1016-22.
-
(2009)
Nat Med
, vol.15
, pp. 1016-1022
-
-
Wu, S.1
Rhee, K.J.2
Albesiano, E.3
-
85
-
-
84879456755
-
Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans
-
Ou J, Carbonero F, Zoetendal EG, et al. Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans. Am J Clin Nutr 2013;98:111-20.
-
(2013)
Am J Clin Nutr
, vol.98
, pp. 111-120
-
-
Ou, J.1
Carbonero, F.2
Zoetendal, E.G.3
-
86
-
-
38549107462
-
Culture-independent analysis of the gut microbiota in colorectal cancer and polyposis
-
Scanlan PD, Shanahan F, Clune Y, et al. Culture-independent analysis of the gut microbiota in colorectal cancer and polyposis. Environ Microbiol 2008;10: 789-98.
-
(2008)
Environ Microbiol
, vol.10
, pp. 789-798
-
-
Scanlan, P.D.1
Shanahan, F.2
Clune, Y.3
-
87
-
-
79956359184
-
Towards the human colorectal cancer microbiome
-
Marchesi JR, Dutilh BE, Hall N, et al. Towards the human colorectal cancer microbiome. PLoS ONE 2011;6:e20447.
-
(2011)
PLoS ONE
, vol.6
-
-
Marchesi, J.R.1
Dutilh, B.E.2
Hall, N.3
-
89
-
-
79751496164
-
Perspective: Alpha-bugs, their microbial partners, and the link to colon cancer
-
Sears CL, Pardoll DM. Perspective: alpha-bugs, their microbial partners, and the link to colon cancer. J Infect Dis 2011;203:306-11.
-
(2011)
J Infect Dis
, vol.203
, pp. 306-311
-
-
Sears, C.L.1
Pardoll, D.M.2
-
90
-
-
84863989936
-
A bacterial driver-passenger model for colorectal cancer: Beyond the usual suspects
-
Tjalsma H, Boleij A, Marchesi JR, et al. A bacterial driver-passenger model for colorectal cancer: beyond the usual suspects. Nature Rev Microbiol 2012;10:575-82.
-
(2012)
Nature Rev Microbiol
, vol.10
, pp. 575-582
-
-
Tjalsma, H.1
Boleij, A.2
Marchesi, J.R.3
-
91
-
-
84896066661
-
Co-occurrence of anaerobic bacteria in colorectal carcinomas
-
Warren RL, Freeman DJ, Pleasance S, et al. Co-occurrence of anaerobic bacteria in colorectal carcinomas. Microbiome 2013;1:16.
-
(2013)
Microbiome
, vol.1
, pp. 16
-
-
Warren, R.L.1
Freeman, D.J.2
Pleasance, S.3
-
92
-
-
77954821323
-
Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas
-
Shen XJ, Rawls JF, Randall T, et al. Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas. Gut Microbes 2010;1:138-47.
-
(2010)
Gut Microbes
, vol.1
, pp. 138-147
-
-
Shen, X.J.1
Rawls, J.F.2
Randall, T.3
-
93
-
-
79960584246
-
Alteration of local microflora and alpha-defensins hyper-production in colonic adenoma mucosa
-
Pagnini C, Corleto VD, Mangoni ML, et al. Alteration of local microflora and alpha-defensins hyper-production in colonic adenoma mucosa. J Clin Gastroenterol 2011;45:602-10.
-
(2011)
J Clin Gastroenterol
, vol.45
, pp. 602-610
-
-
Pagnini, C.1
Corleto, V.D.2
Mangoni, M.L.3
-
94
-
-
84880667574
-
The itinerary of Streptococcus gallolyticus infection in patients with colonic malignant disease
-
Boleij A, Tjalsma H. The itinerary of Streptococcus gallolyticus infection in patients with colonic malignant disease. Lancet Infect Dis 2013;13:719-24.
-
(2013)
Lancet Infect Dis
, vol.13
, pp. 719-724
-
-
Boleij, A.1
Tjalsma, H.2
-
95
-
-
84922347688
-
Commensal bacteria drive endogenous transformation and tumour stem cell marker expression through a bystander effect
-
Wang X, Yang Y, Huycke MM. Commensal bacteria drive endogenous transformation and tumour stem cell marker expression through a bystander effect. Gut 2015;64:459-68.
-
(2015)
Gut
, vol.64
, pp. 459-468
-
-
Wang, X.1
Yang, Y.2
Huycke, M.M.3
-
96
-
-
84897964236
-
Colonic mucosa-associated diffusely adherent afaC+ Escherichia coli expressing lpfA and pks are increased in inflammatory bowel disease and colon cancer
-
Prorok-Hamon M, Friswell MK, Alswied A, et al. Colonic mucosa-associated diffusely adherent afaC+ Escherichia coli expressing lpfA and pks are increased in inflammatory bowel disease and colon cancer. Gut 2014;63: 761-70.
-
(2014)
Gut
, vol.63
, pp. 761-770
-
-
Prorok-Hamon, M.1
Friswell, M.K.2
Alswied, A.3
-
97
-
-
0034079238
-
Interactions between periodontal bacteria and human oral epithelial cells: Fusobacterium nucleatum adheres to and invades epithelial cells
-
Han YW, Shi W, Huang GT, et al. Interactions between periodontal bacteria and human oral epithelial cells: Fusobacterium nucleatum adheres to and invades epithelial cells. Infect Immun 2000;68:3140-6.
-
(2000)
Infect Immun
, vol.68
, pp. 3140-3146
-
-
Han, Y.W.1
Shi, W.2
Huang, G.T.3
-
98
-
-
84882334105
-
Fusobacterium nucleatum promotes colorectal carcinogenesis by modulating E-cadherin/beta-catenin signaling via its FadA adhesin
-
Rubinstein MR, Wang X, Liu W, et al. Fusobacterium nucleatum promotes colorectal carcinogenesis by modulating E-cadherin/beta-catenin signaling via its FadA adhesin. Cell Host Microbe 2013;14:195-206.
-
(2013)
Cell Host Microbe
, vol.14
, pp. 195-206
-
-
Rubinstein, M.R.1
Wang, X.2
Liu, W.3
-
99
-
-
84902243899
-
Enteric bacterial protein AvrA promotes colonic tumorigenesis and activates colonic beta-catenin signaling pathway
-
Lu R, Wu S, Zhang YG, et al. Enteric bacterial protein AvrA promotes colonic tumorigenesis and activates colonic beta-catenin signaling pathway. Oncogenesis 2014;3:e105.
-
(2014)
Oncogenesis
, vol.3
, pp. e105
-
-
Lu, R.1
Wu, S.2
Zhang, Y.G.3
-
100
-
-
84880059693
-
Dysbiosis signature of fecal microbiota in colorectal cancer patients
-
Wu N, Yang X, Zhang R, et al. Dysbiosis signature of fecal microbiota in colorectal cancer patients. Microb Ecol 2013;66:462-70.
-
(2013)
Microb Ecol
, vol.66
, pp. 462-470
-
-
Wu, N.1
Yang, X.2
Zhang, R.3
-
101
-
-
84897124480
-
Analysis of the intestinal lumen microbiota in an animal model of colorectal cancer
-
Zhu Q, Jin Z, Wu W, et al. Analysis of the intestinal lumen microbiota in an animal model of colorectal cancer. PLoS ONE 2014;9:e90849.
-
(2014)
PLoS ONE
, vol.9
-
-
Zhu, Q.1
Jin, Z.2
Wu, W.3
-
102
-
-
84870916445
-
Microbial pathways in colonic sulfur metabolism and links with health and disease
-
Carbonero F, Benefiel AC, Alizadeh-Ghamsari AH, et al. Microbial pathways in colonic sulfur metabolism and links with health and disease. Front Physiol 2012;3:448.
-
(2012)
Front Physiol
, vol.3
, pp. 448
-
-
Carbonero, F.1
Benefiel, A.C.2
Alizadeh-Ghamsari, A.H.3
-
103
-
-
84885711264
-
Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota
-
Kashyap PC, Marcobal A, Ursell LK, et al. Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota. Proc Natl Acad Sci USA 2013;110:17059-64.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 17059-17064
-
-
Kashyap, P.C.1
Marcobal, A.2
Ursell, L.K.3
-
104
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu GD, Chen J, Hoffmann C, et al. Linking long-term dietary patterns with gut microbial enterotypes. Science 2011;334:105-8.
-
(2011)
Science
, vol.334
, pp. 105-108
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
-
105
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
David LA, Maurice CF, Carmody RN, et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature 2014;505:559-63.
-
(2014)
Nature
, vol.505
, pp. 559-563
-
-
David, L.A.1
Maurice, C.F.2
Carmody, R.N.3
-
106
-
-
84929094853
-
Fat, fibre and cancer risk in African Americans and rural Africans
-
O'Keefe SJ, Li JV, Lahti L, et al. Fat, fibre and cancer risk in African Americans and rural Africans. Nature Commun 2015;6:6342.
-
(2015)
Nature Commun
, vol.6
, pp. 6342
-
-
O'Keefe, S.J.1
Li, J.V.2
Lahti, L.3
-
108
-
-
84905675648
-
Expert consensus document. The international scientific association for probiotics and prebiotics consensus statement on the scope and appropriate use of the term probiotic
-
Hill C, Guarner F, Reid G, et al. Expert consensus document. The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic. Nat Rev Gastroenterol Hepatol 2014;11:506-14.
-
(2014)
Nat Rev Gastroenterol Hepatol
, vol.11
, pp. 506-514
-
-
Hill, C.1
Guarner, F.2
Reid, G.3
-
109
-
-
67649697335
-
Mechanisms of action of probiotics: Recent advances
-
Ng SC, Hart AL, Kamm MA, et al. Mechanisms of action of probiotics: recent advances. Inflamm Bowel Dis 2009;15:300-10.
-
(2009)
Inflamm Bowel Dis
, vol.15
, pp. 300-310
-
-
Ng, S.C.1
Hart, A.L.2
Kamm, M.A.3
-
110
-
-
0029013322
-
Dietary modulation of the human colonic microbiota: Introducing the concept of prebiotics
-
Gibson GR, Roberfroid MB. Dietary modulation of the human colonic microbiota: introducing the concept of prebiotics. J Nutr 1995;125:1401-12.
-
(1995)
J Nutr
, vol.125
, pp. 1401-1412
-
-
Gibson, G.R.1
Roberfroid, M.B.2
|