-
1
-
-
0036407233
-
Biofilms as complex differentiated communities
-
Stoodley, P.; Sauer, K.; Davies, D.; Costerton, J.W. Biofilms as complex differentiated communities. Annu. Rev. Microbiol. 2002, 56, 187-209
-
(2002)
Annu. Rev. Microbiol
, vol.56
, pp. 187-209
-
-
Stoodley, P.1
Sauer, K.2
Davies, D.3
Costerton, J.W.4
-
2
-
-
39149100341
-
Physiological heterogeneity in biofilms
-
Stewart, P.S.; Franklin, M.J. Physiological heterogeneity in biofilms. Nat. Rev. Microbiol. 2008, 6, 199-210
-
(2008)
Nat. Rev. Microbiol
, vol.6
, pp. 199-210
-
-
Stewart, P.S.1
Franklin, M.J.2
-
3
-
-
84893510429
-
Microbial consortia engineering for cellular factories: In vitro to in silico systems
-
Bernstein, H.C.; Carlson, R.P. Microbial consortia engineering for cellular factories: In vitro to in silico systems. Comput. Struct. Biotechnol. J. 2012, 3, e201210017
-
(2012)
Comput. Struct. Biotechnol. J
, vol.3
-
-
Bernstein, H.C.1
Carlson, R.P.2
-
4
-
-
84937251378
-
A functional perspective on phenotypic heterogeneity in microorganisms
-
Ackermann, M. A functional perspective on phenotypic heterogeneity in microorganisms. Nat. Rev. Microbiol. 2015, 13, 497-508
-
(2015)
Nat. Rev. Microbiol
, vol.13
, pp. 497-508
-
-
Ackermann, M.1
-
5
-
-
1842612577
-
Bacterial biofilms: From the natural environment to infectious diseases
-
Hall-Stoodley, L.; Costerton, J.W.; Stoodley, P. Bacterial biofilms: From the natural environment to infectious diseases. Nat. Rev. Microbiol. 2004, 2, 95-108
-
(2004)
Nat. Rev. Microbiol
, vol.2
, pp. 95-108
-
-
Hall-Stoodley, L.1
Costerton, J.W.2
Stoodley, P.3
-
6
-
-
72949091232
-
Bacterial community variation in human body habitats across space and time
-
Costello, E.K.; Lauber, C.L.; Hamady, M.; Fierer, N.; Gordon, J.I.; Knight, R. Bacterial community variation in human body habitats across space and time. Science 2009, 326, 1694-1697
-
(2009)
Science
, vol.326
, pp. 1694-1697
-
-
Costello, E.K.1
Lauber, C.L.2
Hamady, M.3
Fierer, N.4
Gordon, J.I.5
Knight, R.6
-
7
-
-
84863920287
-
Microbial interactions: From networks to models
-
Faust, K.; Raes, J. Microbial interactions: From networks to models. Nat. Rev. Microbiol. 2012, 10, 538-550
-
(2012)
Nat. Rev. Microbiol
, vol.10
, pp. 538-550
-
-
Faust, K.1
Raes, J.2
-
8
-
-
84931022517
-
The idiosyncrasy of spatial structure in bacterial competition
-
Hol, F.J.; Galajda, P.; Woolthuis, R.G.; Dekker, C.; Keymer, J.E. The idiosyncrasy of spatial structure in bacterial competition. BMC Res. Notes 2015, 8, 245
-
(2015)
BMC Res. Notes
, vol.8
, pp. 245
-
-
Hol, F.J.1
Galajda, P.2
Woolthuis, R.G.3
Dekker, C.4
Keymer, J.E.5
-
9
-
-
84987788584
-
Impact of spatial distribution on the development of mutualism in microbes
-
Kovács, á.T. Impact of spatial distribution on the development of mutualism in microbes. Front. Microbiol. 2014, 5, 649
-
(2014)
Front. Microbiol
, vol.5
, pp. 649
-
-
Kovács, Á.T.1
-
10
-
-
0033793385
-
Spatial organization of microbial biofilm communities
-
Tolker-Nielsen, T.; Molin, S. Spatial organization of microbial biofilm communities. Microb. Ecol. 2000, 40, 75-84
-
(2000)
Microb. Ecol
, vol.40
, pp. 75-84
-
-
Tolker-Nielsen, T.1
Molin, S.2
-
11
-
-
84893682582
-
Interactions in multispecies biofilms: Do they actually matter?
-
Burmølle, M.; Ren, D.; Bjarnsholt, T.; Sørensen, S.J. Interactions in multispecies biofilms: Do they actually matter? Trends Microbiol. 2014, 22, 84-91
-
(2014)
Trends Microbiol
, vol.22
, pp. 84-91
-
-
Burmølle, M.1
Ren, D.2
Bjarnsholt, T.3
Sørensen, S.J.4
-
12
-
-
84901067629
-
Metabolic proximity in the order of colonization of a microbial community
-
Mazumdar, V.; Amar, S.; Segrè, D. Metabolic proximity in the order of colonization of a microbial community. PLoS ONE 2013, 8, e77617
-
(2013)
PLoS ONE
, vol.8
-
-
Mazumdar, V.1
Amar, S.2
Segrè, D.3
-
13
-
-
0032486793
-
A review of experimental measurements of effective diffusive permeabilities and effective diffusion coefficients in biofilms
-
Stewart, P.S. A review of experimental measurements of effective diffusive permeabilities and effective diffusion coefficients in biofilms. Biotechnol. Bioeng. 1998, 59, 261-272
-
(1998)
Biotechnol. Bioeng
, vol.59
, pp. 261-272
-
-
Stewart, P.S.1
-
14
-
-
84859615314
-
Development and application of a polymicrobial, in vitro, wound biofilm model
-
Woods, J.; Boegli, L.; Kirker, K.R.; Agostinho, A.M.; Durch, A.M.; deLancey Pulcini, E.; Stewart, P.S.; James, G.A. Development and application of a polymicrobial, in vitro, wound biofilm model. J. Appl. Microbiol. 2012, 112, 998-1006
-
(2012)
J. Appl. Microbiol
, vol.112
, pp. 998-1006
-
-
Woods, J.1
Boegli, L.2
Kirker, K.R.3
Agostinho, A.M.4
Durch, A.M.5
deLancey Pulcini, E.6
Stewart, P.S.7
James, G.A.8
-
15
-
-
77954284638
-
Robustness analysis of culturing perturbations on Escherichia coli colony biofilm beta-lactam and aminoglycoside antibiotic tolerance
-
Zuroff, T.R.; Bernstein, H.; Lloyd-Randolfi, J.; Jimenez-Taracido, L.; Stewart, P.S.; Carlson, R.P. Robustness analysis of culturing perturbations on Escherichia coli colony biofilm beta-lactam and aminoglycoside antibiotic tolerance. BMC Microbiol. 2010, 10, 185
-
(2010)
BMC Microbiol
, vol.10
, pp. 185
-
-
Zuroff, T.R.1
Bernstein, H.2
Lloyd-Randolfi, J.3
Jimenez-Taracido, L.4
Stewart, P.S.5
Carlson, R.P.6
-
16
-
-
0033930831
-
Role of antibiotic penetration limitation in Klebsiella pneumoniae biofilm resistance to ampicillin and ciprofloxacin
-
Anderl, J.N.; Franklin, M.J.; Stewart, P.S. Role of antibiotic penetration limitation in Klebsiella pneumoniae biofilm resistance to ampicillin and ciprofloxacin. Antimicrob. Agents Chemother. 2000, 44, 1818-1824
-
(2000)
Antimicrob. Agents Chemother
, vol.44
, pp. 1818-1824
-
-
Anderl, J.N.1
Franklin, M.J.2
Stewart, P.S.3
-
17
-
-
84979556395
-
Polysaccharide degradation by the intestinal microbiota and its influence on human health and disease
-
Cockburn, D.W.; Koropatkin, N.M. Polysaccharide degradation by the intestinal microbiota and its influence on human health and disease. J. Mol. Biol. 2016, 428, 3230-3252
-
(2016)
J. Mol. Biol
, vol.428
, pp. 3230-3252
-
-
Cockburn, D.W.1
Koropatkin, N.M.2
-
18
-
-
84905395451
-
Nutrient cross-feeding in the microbial world
-
Seth, E.C.; Taga, M.E. Nutrient cross-feeding in the microbial world. Front. Microbiol. 2014, 5, 350
-
(2014)
Front. Microbiol
, vol.5
, pp. 350
-
-
Seth, E.C.1
Taga, M.E.2
-
19
-
-
84899480571
-
Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria
-
Pande, S.; Merker, H.; Bohl, K.; Reichelt, M.; Schuster, S.; De Figueiredo, L.F.; Kaleta, C.; Kost, C. Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria. ISME J. 2014, 8, 953-962
-
(2014)
ISME J
, vol.8
, pp. 953-962
-
-
Pande, S.1
Merker, H.2
Bohl, K.3
Reichelt, M.4
Schuster, S.5
De Figueiredo, L.F.6
Kaleta, C.7
Kost, C.8
-
20
-
-
84959897730
-
Engineering Human Microbiota: Influencing Cellular and Community Dynamics for Therapeutic Applications
-
Woloszynek, S.; Pastor, S.; Mell, J.; Nandi, N.; Sokhansanj, B.; Rosen, G. Engineering Human Microbiota: Influencing Cellular and Community Dynamics for Therapeutic Applications. Int. Rev. Cell Mol. Biol. 2016, 324, 67-124
-
(2016)
Int. Rev. Cell Mol. Biol
, vol.324
, pp. 67-124
-
-
Woloszynek, S.1
Pastor, S.2
Mell, J.3
Nandi, N.4
Sokhansanj, B.5
Rosen, G.6
-
21
-
-
79951810051
-
Ecological succession in long-term experimentally evolved biofilms produces synergistic communities
-
Poltak, S.R.; Cooper, V.S. Ecological succession in long-term experimentally evolved biofilms produces synergistic communities. ISME J. 2011, 5, 369-378
-
(2011)
ISME J
, vol.5
, pp. 369-378
-
-
Poltak, S.R.1
Cooper, V.S.2
-
22
-
-
78649851616
-
Dynamics in the mixed microbial concourse
-
Wintermute, E.H.; Silver, P.A. Dynamics in the mixed microbial concourse. Genes Dev. 2010, 24, 2603-2614
-
(2010)
Genes Dev
, vol.24
, pp. 2603-2614
-
-
Wintermute, E.H.1
Silver, P.A.2
-
23
-
-
84949774155
-
Development of a laboratory model of a phototroph-heterotroph mixed-species biofilm at the stone/air interface
-
Villa, F.; Pitts, B.; Lauchnor, E.; Cappitelli, F.; Stewart, P.S. Development of a laboratory model of a phototroph-heterotroph mixed-species biofilm at the stone/air interface. Front. Microbiol. 2015, 6, 1251
-
(2015)
Front. Microbiol
, vol.6
, pp. 1251
-
-
Villa, F.1
Pitts, B.2
Lauchnor, E.3
Cappitelli, F.4
Stewart, P.S.5
-
24
-
-
84949571337
-
Privatization of cooperative benefits stabilizes mutualistic cross-feeding interactions in spatially structured environments
-
Pande, S.; Kaftan, F.; Lang, S.; Svatoš, A.; Germerodt, S.; Kost, C. Privatization of cooperative benefits stabilizes mutualistic cross-feeding interactions in spatially structured environments. ISME J. 2016, 10, 1413-1423
-
(2016)
ISME J
, vol.10
, pp. 1413-1423
-
-
Pande, S.1
Kaftan, F.2
Lang, S.3
Svatoš, A.4
Germerodt, S.5
Kost, C.6
-
25
-
-
84862286169
-
A framework for human microbiome research
-
Human Microbiome Project Consortium. A framework for human microbiome research. Nature 2012, 486, 215-221
-
(2012)
Nature
, vol.486
, pp. 215-221
-
-
-
26
-
-
85015632481
-
Chemical conversations in the gut microbiota
-
Thompson, J.A.; Oliveira, R.A.; Xavier, K.B. Chemical conversations in the gut microbiota. Gut Microbes 2016, 7, 163-170
-
(2016)
Gut Microbes
, vol.7
, pp. 163-170
-
-
Thompson, J.A.1
Oliveira, R.A.2
Xavier, K.B.3
-
27
-
-
80054925355
-
Eating for two: How metabolism establishes interspecies interactions in the gut
-
Fischbach, M.A.; Sonnenburg, J.L. Eating for two: How metabolism establishes interspecies interactions in the gut. Cell Host Microbe 2011, 10, 336-347
-
(2011)
Cell Host Microbe
, vol.10
, pp. 336-347
-
-
Fischbach, M.A.1
Sonnenburg, J.L.2
-
28
-
-
84961200851
-
Formation of short chain fatty acids by the gut microbiota and their impact on human metabolism
-
Morrison, D.J.; Preston, T. Formation of short chain fatty acids by the gut microbiota and their impact on human metabolism. Gut Microbes 2016, 7, 189-200
-
(2016)
Gut Microbes
, vol.7
, pp. 189-200
-
-
Morrison, D.J.1
Preston, T.2
-
29
-
-
84978431877
-
The microbiota in adaptive immune homeostasis and disease
-
Honda, K.; Littman, D.R. The microbiota in adaptive immune homeostasis and disease. Nature 2016, 535, 75-84
-
(2016)
Nature
, vol.535
, pp. 75-84
-
-
Honda, K.1
Littman, D.R.2
-
31
-
-
84945295917
-
Interactions between the gastrointestinal microbiome and Clostridium difficile
-
Theriot, C.M.; Young, V.B. Interactions between the gastrointestinal microbiome and Clostridium difficile. Annu. Rew. Microbiol. 2015, 69, 445-461
-
(2015)
Annu. Rew. Microbiol
, vol.69
, pp. 445-461
-
-
Theriot, C.M.1
Young, V.B.2
-
32
-
-
85108330089
-
Microbiome, Metabolome and Inflammatory Bowel Disease
-
Ahmed, I.; Roy, B.C.; Khan, S.A.; Septer, S.; Umar, S. Microbiome, Metabolome and Inflammatory Bowel Disease. Microorganisms 2016, 4, 20
-
(2016)
Microorganisms
, vol.4
, pp. 20
-
-
Ahmed, I.1
Roy, B.C.2
Khan, S.A.3
Septer, S.4
Umar, S.5
-
33
-
-
84949818660
-
Dysbiotic gut microbiome: A key element of Crohn's disease
-
Øyri, S.F.; Muzes, G.; Sipos, F. Dysbiotic gut microbiome: A key element of Crohn's disease. Comp. Immunol. Microbiol. Infect. Dis. 2015, 43, 36-49
-
(2015)
Comp. Immunol. Microbiol. Infect. Dis
, vol.43
, pp. 36-49
-
-
Øyri, S.F.1
Muzes, G.2
Sipos, F.3
-
34
-
-
84976274744
-
The gut microbiome and obesity
-
John, G.K.; Mullin, G.E. The gut microbiome and obesity. Curr. Oncol. Rep. 2016, 18, 1-7
-
(2016)
Curr. Oncol. Rep
, vol.18
, pp. 1-7
-
-
John, G.K.1
Mullin, G.E.2
-
35
-
-
84988372530
-
The gut microbiota and metabolic disease: Current understanding and future perspectives
-
Arora, T.; Bäckhed, F. The gut microbiota and metabolic disease: Current understanding and future perspectives. J. Intern. Med. 2016, 280, 339-349
-
(2016)
J. Intern. Med
, vol.280
, pp. 339-349
-
-
Arora, T.1
Bäckhed, F.2
-
36
-
-
84988706132
-
Human microbiome as therapeutic intervention target to reduce cardiovascular disease risk
-
Koopen, A.M.; Groen, A.K.; Nieuwdorp, M. Human microbiome as therapeutic intervention target to reduce cardiovascular disease risk. Curr. Opin. Lipidol. 2016, 27, 615-622
-
(2016)
Curr. Opin. Lipidol
, vol.27
, pp. 615-622
-
-
Koopen, A.M.1
Groen, A.K.2
Nieuwdorp, M.3
-
37
-
-
84988448084
-
The microbiome: A revolution in treatment for rheumatic diseases?
-
Rosenbaum, J.T.; Asquith, M.J. The microbiome: A revolution in treatment for rheumatic diseases? Curr. Rheumatol. Rep. 2016, 18, 62
-
(2016)
Curr. Rheumatol. Rep
, vol.18
, pp. 62
-
-
Rosenbaum, J.T.1
Asquith, M.J.2
-
38
-
-
84940498810
-
Can we change our microbiome to prevent colorectal cancer development?
-
Manzat-Saplacan, R.M.; Mircea, P.A.; Balacescu, L.; Chira, R.I.; Berindan-Neagoe, I.; Balacescu, O. Can we change our microbiome to prevent colorectal cancer development? Acta Oncol. 2015, 54, 1085-1095
-
(2015)
Acta Oncol
, vol.54
, pp. 1085-1095
-
-
Manzat-Saplacan, R.M.1
Mircea, P.A.2
Balacescu, L.3
Chira, R.I.4
Berindan-Neagoe, I.5
Balacescu, O.6
-
39
-
-
84916594191
-
The gut microbiome and diet in psychiatry: Focus on depression
-
Dash, S.; Clarke, G.; Berk, M.; Jacka, F.N. The gut microbiome and diet in psychiatry: Focus on depression. Curr. Opin. Psychiatry 2015, 28, 1-6
-
(2015)
Curr. Opin. Psychiatry
, vol.28
, pp. 1-6
-
-
Dash, S.1
Clarke, G.2
Berk, M.3
Jacka, F.N.4
-
40
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
Frank, D.N.; Amand, A.L.S.; Feldman, R.A.; Boedeker, E.C.; Harpaz, N.; Pace, N.R. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc. Natl. Acad. Sci. USA 2007, 104, 13780-13785
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 13780-13785
-
-
Frank, D.N.1
Amand, A.L.S.2
Feldman, R.A.3
Boedeker, E.C.4
Harpaz, N.5
Pace, N.R.6
-
41
-
-
84941183248
-
The role of short chain fatty acids in appetite regulation and energy homeostasis
-
Byrne, C.; Chambers, E.; Morrison, D.; Frost, G. The role of short chain fatty acids in appetite regulation and energy homeostasis. Int. J. Obes. 2015, 39, 1331-1338
-
(2015)
Int. J. Obes
, vol.39
, pp. 1331-1338
-
-
Byrne, C.1
Chambers, E.2
Morrison, D.3
Frost, G.4
-
42
-
-
84871732071
-
Genomic variation landscape of the human gut microbiome
-
Schloissnig, S.; Arumugam, M.; Sunagawa, S.; Mitreva, M.; Tap, J.; Zhu, A.; Waller, A.; Mende, D.R.; Kultima, J.R.; Martin, J.; et al. Genomic variation landscape of the human gut microbiome. Nature 2013, 493, 45-50
-
(2013)
Nature
, vol.493
, pp. 45-50
-
-
Schloissnig, S.1
Arumugam, M.2
Sunagawa, S.3
Mitreva, M.4
Tap, J.5
Zhu, A.6
Waller, A.7
Mende, D.R.8
Kultima, J.R.9
Martin, J.10
-
43
-
-
84917679751
-
The gut microbiome in health and in disease
-
Shreiner, A.B.; Kao, J.Y.; Young, V.B. The gut microbiome in health and in disease. Curr. Opin. Gastroenterol. 2015, 31, 69
-
(2015)
Curr. Opin. Gastroenterol
, vol.31
, pp. 69
-
-
Shreiner, A.B.1
Kao, J.Y.2
Young, V.B.3
-
44
-
-
84868158515
-
Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice
-
Lawley, T.D.; Clare, S.;Walker, A.W.; Stares, M.D.; Connor, T.R.; Raisen, C.; Goulding, D.; Rad, R.; Schreiber, F.; Brandt, C.; et al. Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice. PLoS Pathog. 2012, 8, e1002995
-
(2012)
PLoS Pathog
, vol.8
-
-
Lawley, T.D.1
Clare, S.2
Walker, A.W.3
Stares, M.D.4
Connor, T.R.5
Raisen, C.6
Goulding, D.7
Rad, R.8
Schreiber, F.9
Brandt, C.10
-
45
-
-
84907553520
-
Clostridium difficile and the microbiota
-
Seekatz, A.M.; Young, V.B. Clostridium difficile and the microbiota. J. Clin. Investig. 2014, 124, 4182-4189
-
(2014)
J. Clin. Investig
, vol.124
, pp. 4182-4189
-
-
Seekatz, A.M.1
Young, V.B.2
-
46
-
-
84866146940
-
Diversity, stability and resilience of the human gut microbiota
-
Lozupone, C.A.; Stombaugh, J.I.; Gordon, J.I.; Jansson, J.K.; Knight, R. Diversity, stability and resilience of the human gut microbiota. Nature 2012, 489, 220-230
-
(2012)
Nature
, vol.489
, pp. 220-230
-
-
Lozupone, C.A.1
Stombaugh, J.I.2
Gordon, J.I.3
Jansson, J.K.4
Knight, R.5
-
47
-
-
84947216877
-
The ecology of the microbiome: Networks, competition, and stability
-
Coyte, K.Z.; Schluter, J.; Foster, K.R. The ecology of the microbiome: Networks, competition, and stability. Science 2015, 350, 663-666
-
(2015)
Science
, vol.350
, pp. 663-666
-
-
Coyte, K.Z.1
Schluter, J.2
Foster, K.R.3
-
48
-
-
84892741486
-
Metabolic and demographic feedbacks shape the emergent spatial structure and function of microbial communities
-
Estrela, S.; Brown, S.P. Metabolic and demographic feedbacks shape the emergent spatial structure and function of microbial communities. PLoS Comput. Biol. 2013, 9, e1003398
-
(2013)
PLoS Comput. Biol
, vol.9
-
-
Estrela, S.1
Brown, S.P.2
-
49
-
-
49049105130
-
Engineering microbial consortia: A new frontier in synthetic biology
-
Brenner, K.; You, L.; Arnold, F.H. Engineering microbial consortia: A new frontier in synthetic biology. Trends Biotechnol. 2008, 26, 483-489
-
(2008)
Trends Biotechnol
, vol.26
, pp. 483-489
-
-
Brenner, K.1
You, L.2
Arnold, F.H.3
-
50
-
-
85028139411
-
Synthetic microbial ecosystems: An exciting tool to understand and apply microbial communities
-
De Roy, K.; Marzorati, M.; Van den Abbeele, P.; Van deWiele, T.; Boon, N. Synthetic microbial ecosystems: An exciting tool to understand and apply microbial communities. Environ. Microbiol. 2014, 16, 1472-1481
-
(2014)
Environ. Microbiol
, vol.16
, pp. 1472-1481
-
-
De Roy, K.1
Marzorati, M.2
Van den Abbeele, P.3
Van deWiele, T.4
Boon, N.5
-
51
-
-
84867198212
-
Towards synthetic microbial consortia for bioprocessing
-
Shong, J.; Diaz, M.R.J.; Collins, C.H. Towards synthetic microbial consortia for bioprocessing. Curr. Opin. Biotechnol. 2012, 23, 798-802
-
(2012)
Curr. Opin. Biotechnol
, vol.23
, pp. 798-802
-
-
Shong, J.1
Diaz, M.R.J.2
Collins, C.H.3
-
52
-
-
84914177556
-
Reprint of design of synthetic microbial communities for biotechnological production processes
-
Jagmann, N.; Philipp, B. Reprint of design of synthetic microbial communities for biotechnological production processes. J. Biotechnol. 2014, 192, 293-301
-
(2014)
J. Biotechnol
, vol.192
, pp. 293-301
-
-
Jagmann, N.1
Philipp, B.2
-
53
-
-
79952748287
-
Unravelling the effects of the environment and host genotype on the gut microbiome
-
Spor, A.; Koren, O.; Ley, R. Unravelling the effects of the environment and host genotype on the gut microbiome. Nat. Rev. Microbiol. 2011, 9, 279-290
-
(2011)
Nat. Rev. Microbiol
, vol.9
, pp. 279-290
-
-
Spor, A.1
Koren, O.2
Ley, R.3
-
54
-
-
84883139076
-
The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism
-
Den Besten, G.; van Eunen, K.; Groen, A.K.; Venema, K.; Reijngoud, D.J.; Bakker, B.M. The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism. J. Lipid Res. 2013, 54, 2325-2340
-
(2013)
J. Lipid Res
, vol.54
, pp. 2325-2340
-
-
Den Besten, G.1
van Eunen, K.2
Groen, A.K.3
Venema, K.4
Reijngoud, D.J.5
Bakker, B.M.6
-
55
-
-
57449090900
-
Defined spatial structure stabilizes a synthetic multispecies bacterial community
-
Kim, H.J.; Boedicker, J.Q.; Choi, J.W.; Ismagilov, R.F. Defined spatial structure stabilizes a synthetic multispecies bacterial community. Proc. Natl. Acad. Sci. USA 2008, 105, 18188-18193
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 18188-18193
-
-
Kim, H.J.1
Boedicker, J.Q.2
Choi, J.W.3
Ismagilov, R.F.4
-
56
-
-
84988847906
-
Resource availability modulates the cooperative and competitive nature of a microbial cross-feeding mutualism
-
Hoek, T.A.; Axelrod, K.; Biancalani, T.; Yurtsev, E.A.; Liu, J.; Gore, J. Resource availability modulates the cooperative and competitive nature of a microbial cross-feeding mutualism. PLoS Biol. 2016, 14, e1002540
-
(2016)
PLoS Biol
, vol.14
-
-
Hoek, T.A.1
Axelrod, K.2
Biancalani, T.3
Yurtsev, E.A.4
Liu, J.5
Gore, J.6
-
57
-
-
84879104937
-
Glycobiome: Bacteria and mucus at the epithelial interface
-
Ouwerkerk, J.P.; de Vos, W.M.; Belzer, C. Glycobiome: Bacteria and mucus at the epithelial interface. Best Pract. Res. Clin. Gastroenterol. 2013, 27, 25-38
-
(2013)
Best Pract. Res. Clin. Gastroenterol
, vol.27
, pp. 25-38
-
-
Ouwerkerk, J.P.1
de Vos, W.M.2
Belzer, C.3
-
58
-
-
34247354093
-
Microbial biofilms in the human gastrointestinal tract
-
Macfarlane, S.; Dillon, J. Microbial biofilms in the human gastrointestinal tract. J. Appl. Microbiol. 2007, 102, 1187-1196
-
(2007)
J. Appl. Microbiol
, vol.102
, pp. 1187-1196
-
-
Macfarlane, S.1
Dillon, J.2
-
59
-
-
84862646387
-
Biofilm-growing intestinal anaerobic bacteria
-
Donelli, G.; Vuotto, C.; Cardines, R.; Mastrantonio, P. Biofilm-growing intestinal anaerobic bacteria. FEMS Immunol. Med. Microbiol. 2012, 65, 318-325
-
(2012)
FEMS Immunol. Med. Microbiol
, vol.65
, pp. 318-325
-
-
Donelli, G.1
Vuotto, C.2
Cardines, R.3
Mastrantonio, P.4
-
60
-
-
84871588520
-
Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut
-
Heinken, A.; Sahoo, S.; Fleming, R.M.; Thiele, I. Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut. Gut Microbes 2013, 4, 28-40
-
(2013)
Gut Microbes
, vol.4
, pp. 28-40
-
-
Heinken, A.1
Sahoo, S.2
Fleming, R.M.3
Thiele, I.4
-
61
-
-
84906052535
-
Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe
-
Heinken, A.; Khan, M.T.; Paglia, G.; Rodionov, D.A.; Harmsen, H.J.; Thiele, I. Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe. J. Bacteriol. 2014, 196, 3289-3302
-
(2014)
J. Bacteriol
, vol.196
, pp. 3289-3302
-
-
Heinken, A.1
Khan, M.T.2
Paglia, G.3
Rodionov, D.A.4
Harmsen, H.J.5
Thiele, I.6
-
62
-
-
80055029470
-
The evolution of metabolic networks of E coli
-
Baumler, D.J.; Peplinski, R.G.; Reed, J.L.; Glasner, J.D.; Perna, N.T. The evolution of metabolic networks of E. coli. BMC Syst. Biol. 2011, 5, 182
-
(2011)
BMC Syst. Biol
, vol.5
, pp. 182
-
-
Baumler, D.J.1
Peplinski, R.G.2
Reed, J.L.3
Glasner, J.D.4
Perna, N.T.5
-
63
-
-
84996587591
-
Systems Metabolic Engineering of Escherichia coli
-
Choi, K.R.; Shin, J.H.; Cho, J.S.; Yang, D.; Lee, S.Y. Systems Metabolic Engineering of Escherichia coli. EcoSal Plus 2016, 7, doi:10.1128/ecosalplus. ESP-0010-2015
-
(2016)
EcoSal Plus
, vol.7
-
-
Choi, K.R.1
Shin, J.H.2
Cho, J.S.3
Yang, D.4
Lee, S.Y.5
-
64
-
-
84938323503
-
Programming a human commensal bacterium, Bacteroides thetaiotaomicron, to sense and respond to stimuli in the murine gut microbiota
-
Mimee, M.; Tucker, A.C.; Voigt, C.A.; Lu, T.K. Programming a human commensal bacterium, Bacteroides thetaiotaomicron, to sense and respond to stimuli in the murine gut microbiota. Cell Syst. 2015, 1, 62-71
-
(2015)
Cell Syst
, vol.1
, pp. 62-71
-
-
Mimee, M.1
Tucker, A.C.2
Voigt, C.A.3
Lu, T.K.4
-
65
-
-
84964478793
-
The healthy human microbiome
-
Lloyd-Price, J.; Abu-Ali, G.; Huttenhower, C. The healthy human microbiome. Genome Med. 2016, 8, 51
-
(2016)
Genome Med
, vol.8
, pp. 51
-
-
Lloyd-Price, J.1
Abu-Ali, G.2
Huttenhower, C.3
-
66
-
-
84978648882
-
Spatiotemporal modeling of microbial metabolism
-
Chen, J.; Gomez, J.A.; Höffner, K.; Phalak, P.; Barton, P.I.; Henson, M.A. Spatiotemporal modeling of microbial metabolism. BMC Syst. Biol. 2016, 10, 21
-
(2016)
BMC Syst. Biol
, vol.10
, pp. 21
-
-
Chen, J.1
Gomez, J.A.2
Höffner, K.3
Phalak, P.4
Barton, P.I.5
Henson, M.A.6
-
67
-
-
84986222443
-
Metabolic modeling of a chronic wound biofilm consortium predicts spatial partitioning of bacterial species
-
Phalak, P.; Chen, J.; Carlson, R.P.; Henson, M.A. Metabolic modeling of a chronic wound biofilm consortium predicts spatial partitioning of bacterial species. BMC Syst. Biol. 2016, 10, 90
-
(2016)
BMC Syst. Biol
, vol.10
, pp. 90
-
-
Phalak, P.1
Chen, J.2
Carlson, R.P.3
Henson, M.A.4
-
68
-
-
84921656802
-
Modeling of biofilm systems: A review
-
Springer: New York, NY, USA
-
Horn, H.; Lackner, S. Modeling of biofilm systems: A review. In Productive Biofilms; Springer: New York, NY, USA, 2014; pp. 53-76
-
(2014)
Productive Biofilms
, pp. 53-76
-
-
Horn, H.1
Lackner, S.2
-
69
-
-
0037372799
-
Diffusion in biofilms
-
Stewart, P.S. Diffusion in biofilms. J. Bacteriol. 2003, 185, 1485-1491
-
(2003)
J. Bacteriol
, vol.185
, pp. 1485-1491
-
-
Stewart, P.S.1
-
70
-
-
76749149000
-
Application of dynamic flux balance analysis to an industrial Escherichia coli fermentation
-
Meadows, A.L.; Karnik, R.; Lam, H.; Forestell, S.; Snedecor, B. Application of dynamic flux balance analysis to an industrial Escherichia coli fermentation. Metab. Eng. 2010, 12, 150-160
-
(2010)
Metab. Eng
, vol.12
, pp. 150-160
-
-
Meadows, A.L.1
Karnik, R.2
Lam, H.3
Forestell, S.4
Snedecor, B.5
-
71
-
-
84923936499
-
DFBAlab: A fast and reliable MATLAB code for dynamic flux balance analysis
-
Gomez, J.A.; Hoffner, K.; Barton, P.I. DFBAlab: A fast and reliable MATLAB code for dynamic flux balance analysis. BMC Bioinform. 2014, 15, 409
-
(2014)
BMC Bioinform
, vol.15
, pp. 409
-
-
Gomez, J.A.1
Hoffner, K.2
Barton, P.I.3
|