-
1
-
-
0037133671
-
Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis
-
Akashi H., and Gojobori T. Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis. Proc. Natl. Acad. Sci. USA 99 (2002) 3695-3700
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 3695-3700
-
-
Akashi, H.1
Gojobori, T.2
-
2
-
-
0035922877
-
Metabolic oscillations in an E. coli fermentation
-
Andersen D.C., Swartz J., Ryll T., Lin N., and Snedecor B. Metabolic oscillations in an E. coli fermentation. Biotechnol. Bioeng. 75 (2001) 212-218
-
(2001)
Biotechnol. Bioeng.
, vol.75
, pp. 212-218
-
-
Andersen, D.C.1
Swartz, J.2
Ryll, T.3
Lin, N.4
Snedecor, B.5
-
3
-
-
34547887655
-
Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity
-
Beg Q.K., Vazquez A., Ernst J., de Menezes M.A., Bar-Joseph Z., Barabasi A.L., and Oltvai Z.N. Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity. Proc. Natl. Acad. Sci. USA 104 (2007) 12663-12668
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 12663-12668
-
-
Beg, Q.K.1
Vazquez, A.2
Ernst, J.3
de Menezes, M.A.4
Bar-Joseph, Z.5
Barabasi, A.L.6
Oltvai, Z.N.7
-
4
-
-
33644832381
-
In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production
-
Bro C., Regenberg B., Forster J., and Nielsen J. In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production. Metab. Eng. 8 (2006) 102-111
-
(2006)
Metab. Eng.
, vol.8
, pp. 102-111
-
-
Bro, C.1
Regenberg, B.2
Forster, J.3
Nielsen, J.4
-
5
-
-
0037008673
-
Transcriptional regulation in constraints-based metabolic models of Escherichia coli
-
Covert M.W., and Palsson B.O. Transcriptional regulation in constraints-based metabolic models of Escherichia coli. J. Biol. Chem. 277 (2002) 28058-28064
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 28058-28064
-
-
Covert, M.W.1
Palsson, B.O.2
-
7
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
Feist A.M., Henry C.S., Reed J.L., Krummenacker M., Joyce A.R., Karp P.D., Broadbelt L.J., Hatzimanikatis V., and Palsson B.O. A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol. Syst. Biol. 3 (2007) 121
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 121
-
-
Feist, A.M.1
Henry, C.S.2
Reed, J.L.3
Krummenacker, M.4
Joyce, A.R.5
Karp, P.D.6
Broadbelt, L.J.7
Hatzimanikatis, V.8
Palsson, B.O.9
-
8
-
-
45149111660
-
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
-
Feist A.M., and Palsson B.O. The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli. Nat. Biotechnol. 26 (2008) 659-667
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 659-667
-
-
Feist, A.M.1
Palsson, B.O.2
-
11
-
-
0025063286
-
A radical-chemical route to acetyl-CoA: the anaerobically induced pyruvate formate-lyase system of Escherichia coli
-
Knappe J., and Sawers G. A radical-chemical route to acetyl-CoA: the anaerobically induced pyruvate formate-lyase system of Escherichia coli. FEMS Microbiol. Rev. 6 (1990) 383-398
-
(1990)
FEMS Microbiol. Rev.
, vol.6
, pp. 383-398
-
-
Knappe, J.1
Sawers, G.2
-
12
-
-
36849002434
-
Systems metabolic engineering of Escherichia coli for l-threonine production
-
Lee K.H., Park J.H., Kim T.Y., Kim H.U., and Lee S.Y. Systems metabolic engineering of Escherichia coli for l-threonine production. Mol. Syst. Biol. 3 (2007) 149
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 149
-
-
Lee, K.H.1
Park, J.H.2
Kim, T.Y.3
Kim, H.U.4
Lee, S.Y.5
-
13
-
-
0036708443
-
Dynamic flux balance analysis of diauxic growth in Escherichia coli
-
Mahadevan R., Edwards J.S., and Doyle III F.J. Dynamic flux balance analysis of diauxic growth in Escherichia coli. Biophys. J. 83 (2002) 1331-1340
-
(2002)
Biophys. J.
, vol.83
, pp. 1331-1340
-
-
Mahadevan, R.1
Edwards, J.S.2
Doyle III, F.J.3
-
14
-
-
0000146510
-
Amino acids as carbon sources
-
Neidhardt F.C., Curtiss R., Ingraham J.L., Lin E.C.C., Low K.B., Magasanik B., Reznikoff W.S., Riley M., Schaechter M., and Umbarger H.E. (Eds), ASM Press, Washington, DC
-
McFall E., and Newman E.B. Amino acids as carbon sources. In: Neidhardt F.C., Curtiss R., Ingraham J.L., Lin E.C.C., Low K.B., Magasanik B., Reznikoff W.S., Riley M., Schaechter M., and Umbarger H.E. (Eds). Escherichia coli and Salmonella. Cellular and Molecular Biology (1996), ASM Press, Washington, DC
-
(1996)
Escherichia coli and Salmonella. Cellular and Molecular Biology
-
-
McFall, E.1
Newman, E.B.2
-
16
-
-
0003742927
-
-
Sinauer Associates, Inc., Sunderland, MA
-
Neidhardt F.C., Ingraham J.L., and Schaechter M. Physiology of the Bacterial Cell. A Molecular Approach (1990), Sinauer Associates, Inc., Sunderland, MA
-
(1990)
Physiology of the Bacterial Cell. A Molecular Approach
-
-
Neidhardt, F.C.1
Ingraham, J.L.2
Schaechter, M.3
-
17
-
-
13644259156
-
The energetic conversion competence of Escherichia coli during aerobic respiration studied by 31P NMR using a circulating fermentation system
-
Noguchi Y., Nakai Y., Shimba N., Toyosaki H., Kawahara Y., Sugimoto S., and Suzuki E. The energetic conversion competence of Escherichia coli during aerobic respiration studied by 31P NMR using a circulating fermentation system. J. Biochem. 136 (2004) 509-515
-
(2004)
J. Biochem.
, vol.136
, pp. 509-515
-
-
Noguchi, Y.1
Nakai, Y.2
Shimba, N.3
Toyosaki, H.4
Kawahara, Y.5
Sugimoto, S.6
Suzuki, E.7
-
18
-
-
64549091131
-
Identification of cellular objective for elucidating the physiological state of plasmid-bearing Escherichia coli using genome-scale in silico analysis
-
Ow D.S., Lee D.Y., Yap M.G., and Oh S.K. Identification of cellular objective for elucidating the physiological state of plasmid-bearing Escherichia coli using genome-scale in silico analysis. Biotechnol. Prog. 25 (2009) 61-67
-
(2009)
Biotechnol. Prog.
, vol.25
, pp. 61-67
-
-
Ow, D.S.1
Lee, D.Y.2
Yap, M.G.3
Oh, S.K.4
-
19
-
-
29544436058
-
An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems
-
Pharkya P., and Maranas C.D. An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems. Metab. Eng. 8 (2006) 1-13
-
(2006)
Metab. Eng.
, vol.8
, pp. 1-13
-
-
Pharkya, P.1
Maranas, C.D.2
-
20
-
-
0343035686
-
Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements
-
Pramanik J., and Keasling J.D. Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements. Biotechnol. Bioeng. 56 (1997) 398-421
-
(1997)
Biotechnol. Bioeng.
, vol.56
, pp. 398-421
-
-
Pramanik, J.1
Keasling, J.D.2
-
21
-
-
0030571215
-
Cybernetic modeling of growth in mixed, substitutable substrate environments: preferential and simultaneous utilization
-
Ramakrishna R., Ramkrishna D., and Konopka A.E. Cybernetic modeling of growth in mixed, substitutable substrate environments: preferential and simultaneous utilization. Biotechnol. Bioeng. 52 (1996) 141-151
-
(1996)
Biotechnol. Bioeng.
, vol.52
, pp. 141-151
-
-
Ramakrishna, R.1
Ramkrishna, D.2
Konopka, A.E.3
-
22
-
-
0344328817
-
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
-
Reed J.L., Vo T.D., Schilling C.H., and Palsson B.O. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biol. 4 (2003) R54
-
(2003)
Genome Biol.
, vol.4
-
-
Reed, J.L.1
Vo, T.D.2
Schilling, C.H.3
Palsson, B.O.4
-
23
-
-
34447523907
-
Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
-
Schuetz R., Kuepfer L., and Sauer U. Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli. Mol. Syst. Biol. 3 (2007) 119
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 119
-
-
Schuetz, R.1
Kuepfer, L.2
Sauer, U.3
-
24
-
-
60349084386
-
Characterizing Escherichia coli DH5alpha growth and metabolism in a complex medium using genome-scale flux analysis
-
Selvarasu S., Ow D.S., Lee S.Y., Lee M.M., Oh S.K., Karimi I.A., and Lee D.Y. Characterizing Escherichia coli DH5alpha growth and metabolism in a complex medium using genome-scale flux analysis. Biotechnol. Bioeng. 102 (2009) 923-934
-
(2009)
Biotechnol. Bioeng.
, vol.102
, pp. 923-934
-
-
Selvarasu, S.1
Ow, D.S.2
Lee, S.Y.3
Lee, M.M.4
Oh, S.K.5
Karimi, I.A.6
Lee, D.Y.7
-
25
-
-
18344372376
-
Expression of full-length immunoglobulins in Escherichia coli: rapid and efficient production of aglycosylated antibodies
-
Simmons L.C., Reilly D., Klimowski L., Raju T.S., Meng G., Sims P., Hong K., Shields R.L., Damico L.A., Rancatore P., and Yansura D.G. Expression of full-length immunoglobulins in Escherichia coli: rapid and efficient production of aglycosylated antibodies. J. Immunol. Methods 263 (2002) 133-147
-
(2002)
J. Immunol. Methods
, vol.263
, pp. 133-147
-
-
Simmons, L.C.1
Reilly, D.2
Klimowski, L.3
Raju, T.S.4
Meng, G.5
Sims, P.6
Hong, K.7
Shields, R.L.8
Damico, L.A.9
Rancatore, P.10
Yansura, D.G.11
-
26
-
-
0027716622
-
Metabolic capabilities of Escherichia coli. I. Synthesis of biosynthetic precursors and cofactors
-
Varma A., and Palsson B.O. Metabolic capabilities of Escherichia coli. I. Synthesis of biosynthetic precursors and cofactors. J. Theor. Biol. 165 (1993) 477-502
-
(1993)
J. Theor. Biol.
, vol.165
, pp. 477-502
-
-
Varma, A.1
Palsson, B.O.2
-
27
-
-
0027723421
-
Metabolic capabilities of Escherichia coli. II. Optimal growth patterns
-
Varma A., and Palsson B.O. Metabolic capabilities of Escherichia coli. II. Optimal growth patterns. J. Theor. Biol. 165 (1993) 503-522
-
(1993)
J. Theor. Biol.
, vol.165
, pp. 503-522
-
-
Varma, A.1
Palsson, B.O.2
-
28
-
-
0027223982
-
Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates
-
Varma A., Boesch B.W., and Palsson B.O. Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates. Appl. Environ. Microbiol. 59 (1993) 2465-2473
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 2465-2473
-
-
Varma, A.1
Boesch, B.W.2
Palsson, B.O.3
-
29
-
-
0033047059
-
Modeling of overflow metabolism in batch and fed-batch cultures of Escherichia coli
-
Xu B., Jahic M., and Enfors S.O. Modeling of overflow metabolism in batch and fed-batch cultures of Escherichia coli. Biotechnol. Prog. 15 (1999) 81-90
-
(1999)
Biotechnol. Prog.
, vol.15
, pp. 81-90
-
-
Xu, B.1
Jahic, M.2
Enfors, S.O.3
-
30
-
-
44049087026
-
Integrating cybernetic modeling with pathway analysis provides a dynamic, systems-level description of metabolic control
-
Young J.D., Henne K.L., Morgan J.A., Konopka A.E., and Ramkrishna D. Integrating cybernetic modeling with pathway analysis provides a dynamic, systems-level description of metabolic control. Biotechnol. Bioeng. 100 (2008) 542-559
-
(2008)
Biotechnol. Bioeng.
, vol.100
, pp. 542-559
-
-
Young, J.D.1
Henne, K.L.2
Morgan, J.A.3
Konopka, A.E.4
Ramkrishna, D.5
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