-
1
-
-
77958014961
-
From structure to function: The ecology of host-associated microbial communities
-
Robinson CJ, Bohannan BJ, Young VB. From structure to function: the ecology of host-associated microbial communities. Microbiol Mol Biol Rev 2010; 74:453-476.
-
(2010)
Microbiol Mol Biol Rev
, vol.74
, pp. 453-476
-
-
Robinson, C.J.1
Bohannan, B.J.2
Young, V.B.3
-
2
-
-
84917726869
-
Methods for characterizing microbial communities associated with the human body
-
Fredricks DN editor. Hoboken New Jersey: John Wiley & Sons, Inc
-
Bassis CM, Young VB, Schmidt TM. Methods for characterizing microbial communities associated with the human body. In: Fredricks DN, editor. The human microbiota: how microbial communities affect health and disease. Hoboken, New Jersey: John Wiley & Sons, Inc; 2013. pp. 51-74.
-
(2013)
The Human Microbiota: How Microbial Communities Affect Health and Disease
, pp. 51-74
-
-
Bassis, C.M.1
Young, V.B.2
Schmidt, T.M.3
-
3
-
-
84888884169
-
High throughput sequencing methods and analysis for microbiome research
-
Di Bella JM, Bao Y, Gloor GB, et al. High throughput sequencing methods and analysis for microbiome research. J Microbiol Methods 2013; 95:401-414.
-
(2013)
J Microbiol Methods
, vol.95
, pp. 401-414
-
-
Di Bella, J.M.1
Bao, Y.2
Gloor, G.B.3
-
4
-
-
84917701407
-
Getting started with microbiome analysis: Sample acquisition to bioinformatics
-
Kumar R, Eipers P, Little RB. Getting started with microbiome analysis: sample acquisition to bioinformatics. Curr Protoc Hum Genet 2014; 82:18.8.1-18.8.29.
-
(2014)
Curr Protoc Hum Genet
, vol.82
, pp. 1881-18829
-
-
Kumar, R.1
Eipers, P.2
Little, R.B.3
-
5
-
-
84898808700
-
Meta'omic analytic techniques for studying the intestinal microbiome
-
Morgan XC, Huttenhower C. Meta'omic analytic techniques for studying the intestinal microbiome. Gastroenterology 2014; 146:1437-1448.
-
(2014)
Gastroenterology
, vol.146
, pp. 1437-1448
-
-
Morgan, X.C.1
Huttenhower, C.2
-
6
-
-
84862286169
-
A framework for human microbiome research
-
Human Microbiome Project Consortium. A framework for human microbiome research. Nature 2012; 486:215-221.
-
(2012)
Nature
, vol.486
, pp. 215-221
-
-
-
7
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J, Li R, Raes J, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010; 464:59-65
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
-
8
-
-
84905730165
-
An integrated catalog of reference genes in the human gut microbiome
-
Li J, Jia H, Cai X, et al. An integrated catalog of reference genes in the human gut microbiome. Nat Biotechnol 2014; 32:834-841.
-
(2014)
Nat Biotechnol
, vol.32
, pp. 834-841
-
-
Li, J.1
Jia, H.2
Cai, X.3
-
9
-
-
84866146940
-
Diversity, stability and resilience of the human gut microbiota
-
Lozupone CA, Stombaugh JI, Gordon JI, et al. Diversity, stability and resilience of the human gut microbiota. Nature 2012; 489:220-230.
-
(2012)
Nature
, vol.489
, pp. 220-230
-
-
Lozupone, C.A.1
Stombaugh, J.I.2
Gordon, J.I.3
-
10
-
-
84862276328
-
Function and diversity of the healthy human microbiome
-
Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature 2012; 486:207-214.
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
11
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam M, Raes J, Pelletier E, et al. Enterotypes of the human gut microbiome. Nature 2011; 473:174-180.
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
-
12
-
-
84900535804
-
Dynamics and associations of microbial community types across the human body
-
Ding T, Schloss PD. Dynamics and associations of microbial community types across the human body. Nature 2014; 509:357-360.
-
(2014)
Nature
, vol.509
, pp. 357-360
-
-
Ding, T.1
Schloss, P.D.2
-
13
-
-
84879744885
-
The long-term stability of the human gut microbiota
-
Faith JJ, Guruge JL, Charbonneau M, et al. The long-term stability of the human gut microbiota. Science 2013; 341:1237439.
-
(2013)
Science
, vol.341
, pp. 1237439
-
-
Faith, J.J.1
Guruge, J.L.2
Charbonneau, M.3
-
14
-
-
84896734943
-
A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes
-
Larsbrink J, Rogers TE, Hemsworth GR, et al. A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes. Nature 2014; 506:498-502
-
(2014)
Nature
, vol.506
, pp. 498-502
-
-
Larsbrink, J.1
Rogers, T.E.2
Hemsworth, G.R.3
-
15
-
-
84904543667
-
Gut microbial metabolism drives transformation of msh2-deficient colon epithelial cells
-
Belcheva A, Irrazabal T, Robertson SJ, et al. Gut microbial metabolism drives transformation of msh2-deficient colon epithelial cells. Cell 2014; 158:288-299.
-
(2014)
Cell
, vol.158
, pp. 288-299
-
-
Belcheva, A.1
Irrazabal, T.2
Robertson, S.J.3
-
16
-
-
84892449521
-
Activation of Gpr109a, receptor for niacin and the commensal metabolite butyrate, suppresses colonic inflammation and carcinogenesis
-
Singh N, Gurav A, Sivaprakasam S, et al. Activation of Gpr109a, receptor for niacin and the commensal metabolite butyrate, suppresses colonic inflammation and carcinogenesis. Immunity 2014; 40:128-139.
-
(2014)
Immunity
, vol.40
, pp. 128-139
-
-
Singh, N.1
Gurav, A.2
Sivaprakasam, S.3
-
17
-
-
84890550163
-
Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation
-
Arpaia N, Campbell C, Fan X, et al. Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation. Nature 2013; 504:451-455.
-
(2013)
Nature
, vol.504
, pp. 451-455
-
-
Arpaia, N.1
Campbell, C.2
Fan, X.3
-
18
-
-
84881477044
-
Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota
-
Atarashi K, Tanoue T, Oshima K, et al. Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota. Nature 2013; 500:232-236.
-
(2013)
Nature
, vol.500
, pp. 232-236
-
-
Atarashi, K.1
Tanoue, T.2
Oshima, K.3
-
19
-
-
85027947787
-
Induction of colonic regulatory T cells by indigenous Clostridium species
-
Atarashi K, Tanoue T, Shima T, et al. Induction of colonic regulatory T cells by indigenous Clostridium species. Science 2011; 331:337-341.
-
(2011)
Science
, vol.331
, pp. 337-341
-
-
Atarashi, K.1
Tanoue, T.2
Shima, T.3
-
20
-
-
84890564250
-
Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells
-
Furusawa Y, Obata Y, Fukuda S, et al. Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells. Nature 2013; 504:446-450.
-
(2013)
Nature
, vol.504
, pp. 446-450
-
-
Furusawa, Y.1
Obata, Y.2
Fukuda, S.3
-
21
-
-
84964313180
-
Characterization of the 17 strains of regulatory T cell-inducing human-derived Clostridia
-
Narushima S, Sugiura Y, Oshima K, et al. Characterization of the 17 strains of regulatory T cell-inducing human-derived Clostridia. Gut Microbes 2014; 5:333-339.
-
(2014)
Gut Microbes
, vol.5
, pp. 333-339
-
-
Narushima, S.1
Sugiura, Y.2
Oshima, K.3
-
22
-
-
84881068658
-
The microbial metabolites, short-chain fatty acids, regulate colonic Treg cell homeostasis
-
Smith PM, Howitt MR, Panikov N, et al. The microbial metabolites, short-chain fatty acids, regulate colonic Treg cell homeostasis. Science 2013; 341:569-573.
-
(2013)
Science
, vol.341
, pp. 569-573
-
-
Smith, P.M.1
Howitt, M.R.2
Panikov, N.3
-
23
-
-
84893370250
-
Identifying gut microbe-host phenotype relationships using combinatorial communities in gnotobiotic mice
-
Faith JJ, Ahern PP, Ridaura VK, et al. Identifying gut microbe-host phenotype relationships using combinatorial communities in gnotobiotic mice. Sci Transl Med 2014; 6:220ra11.
-
(2014)
Sci Transl Med
, vol.6
, pp. 220ra11
-
-
Faith, J.J.1
Ahern, P.P.2
Ridaura, V.K.3
-
24
-
-
84898789502
-
Regulation of the immune system by the resident intestinal bacteria
-
Kamada N, Nunez G. Regulation of the immune system by the resident intestinal bacteria. Gastroenterology 2014; 146:1477-1488.
-
(2014)
Gastroenterology
, vol.146
, pp. 1477-1488
-
-
Kamada, N.1
Nunez, G.2
-
25
-
-
84887323708
-
Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis
-
Scher JU, Sczesnak A, Longman RS, et al. Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis. Elife 2013; 2:e01202.
-
(2013)
Elife
, vol.2
, pp. e01202
-
-
Scher, J.U.1
Sczesnakgman, R.S.2
-
26
-
-
84882354326
-
Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment
-
Kostic AD, Chun E, Robertson L, et al. Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment. Cell Host Microbe 2013; 14:207-215.
-
(2013)
Cell Host Microbe
, vol.14
, pp. 207-215
-
-
Kostic, A.D.1
Chun, E.2
Robertson, L.3
-
27
-
-
84883110880
-
Richness of human gut microbiome correlates with metabolic markers
-
Le Chatelier E, Nielsen T, Qin J, et al. Richness of human gut microbiome correlates with metabolic markers. Nature 2013; 500:541-546.
-
(2013)
Nature
, vol.500
, pp. 541-546
-
-
Le Chatelier, E.1
Nielsen, T.2
Qin, J.3
-
28
-
-
84878709716
-
Gut metagenome in European women with normal, impaired and diabetic glucose control
-
Karlsson FH, Tremaroli V, Nookaew I, et al. Gut metagenome in European women with normal, impaired and diabetic glucose control. Nature 2013; 498:99-103.
-
(2013)
Nature
, vol.498
, pp. 99-103
-
-
Karlsson, F.H.1
Tremaroli, V.2
Nookaew, I.3
-
29
-
-
79953733693
-
Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
-
Wang Z, Klipfell E, Bennett BJ, et al. Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease. Nature 2011; 472:57-63.
-
(2011)
Nature
, vol.472
, pp. 57-63
-
-
Wang, Z.1
Klipfell, E.2
Bennett, B.J.3
-
30
-
-
84876563088
-
Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk
-
Tang WH, Wang Z, Levison BS, et al. Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk. N Engl J Med 2013; 368:1575-1584.
-
(2013)
N Engl J Med
, vol.368
, pp. 1575-1584
-
-
Tang, W.H.1
Wang, Z.2
Levison, B.S.3
-
31
-
-
84877331372
-
Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis
-
Koeth RA, Wang Z, Levison BS, et al. Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis. Nat Med 2013; 19:576-585.
-
(2013)
Nat Med
, vol.19
, pp. 576-585
-
-
Koeth, R.A.1
Wang, Z.2
Levison, B.S.3
-
32
-
-
84871120114
-
Intestinal microbiota in functional bowel disorders: A Rome foundation report
-
Simren M, Barbara G, Flint HJ, et al. Intestinal microbiota in functional bowel disorders: a Rome foundation report. Gut 2013; 62:159-176.
-
(2013)
Gut
, vol.62
, pp. 159-176
-
-
Simren, M.1
Barbara, G.2
Flint, H.J.3
-
33
-
-
84926252332
-
Diets that differ in their FODMAP content alter the colonic luminal microenvironment
-
[Epub ahead of print]
-
Halmos EP, Christophersen CT, Bird AR, et al. Diets that differ in their FODMAP content alter the colonic luminal microenvironment. Gut 2014. [Epub ahead of print]
-
(2014)
Gut
-
-
Halmos, E.P.1
Christophersen, C.T.2
Bird, A.R.3
-
34
-
-
84890685902
-
A diet low in FODMAPs reduces symptoms of irritable bowel syndrome
-
Halmos EP, Power VA, Shepherd SJ, et al. A diet low in FODMAPs reduces symptoms of irritable bowel syndrome. Gastroenterology 2014; 146:67-75.
-
(2014)
Gastroenterology
, vol.146
, pp. 67-75
-
-
Halmos, E.P.1
Power, V.A.2
Shepherd, S.J.3
-
35
-
-
84878287270
-
Consumption of fermented milk product with probiotic modulates brain activity
-
Tillisch K, Labus J, Kilpatrick L, et al. Consumption of fermented milk product with probiotic modulates brain activity. Gastroenterology 2013; 144:1394-1401.
-
(2013)
Gastroenterology
, vol.144
, pp. 1394-1401
-
-
Tillisch, K.1
Labus, J.2
Kilpatrick, L.3
-
36
-
-
84898771460
-
Role of the intestinal microbiota in resistance to colonization by Clostridium difficile
-
Britton RA, Young VB. Role of the intestinal microbiota in resistance to colonization by Clostridium difficile. Gastroenterology 2014; 146:1547-1553.
-
(2014)
Gastroenterology
, vol.146
, pp. 1547-1553
-
-
Britton, R.A.1
Young, V.B.2
-
37
-
-
84875952542
-
Fecal microbiota transplantation for Clostridium difficile infection: Systematic review and meta-analysis
-
Kassam Z, Lee CH, Yuan Y, et al. Fecal microbiota transplantation for Clostridium difficile infection: systematic review and meta-analysis. Am J Gastroenterol 2013; 108:500-508.
-
(2013)
Am J Gastroenterol
, vol.108
, pp. 500-508
-
-
Kassam, Z.1
Lee, C.H.2
Yuan, Y.3
-
38
-
-
84873019302
-
Duodenal infusion of donor feces for recurrent Clostridium difficile
-
van Nood E, Vrieze A, Nieuwdorp M, et al. Duodenal infusion of donor feces for recurrent Clostridium difficile. N Engl J Med 2013; 368:407-415.
-
(2013)
N Engl J Med
, vol.368
, pp. 407-415
-
-
Van Nood, E.1
Vrieze, A.2
Nieuwdorp, M.3
-
39
-
-
84903954202
-
Recovery of the gut microbiome following fecal microbiota transplantation
-
Seekatz AM, Aas J, Gessert CE, et al. Recovery of the gut microbiome following fecal microbiota transplantation. MBio 2014; 5:e00893-e00914.
-
(2014)
MBio
, vol.5
, pp. e00893-e00914
-
-
Seekatz, A.M.1
Aas, J.2
Gessert, C.E.3
-
40
-
-
84877020842
-
Stool substitute transplant therapy for the eradication of Clostridium difficile infection: RePOOPulating' the gut
-
Petrof EO, Gloor GB, Vanner SJ, et al. Stool substitute transplant therapy for the eradication of Clostridium difficile infection: 'RePOOPulating' the gut. Microbiome 2013; 1:3.
-
(2013)
Microbiome
, vol.1
, pp. 3
-
-
Petrof, E.O.1
Gloor, G.B.2
Vanner, S.J.3
-
41
-
-
84892894991
-
Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection
-
Theriot CM, Koenigsknecht MJ, Carlson PE Jr, et al. Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection. Nat Commun 2014; 5:3114.
-
(2014)
Nat Commun
, vol.5
, pp. 3114
-
-
Theriot, C.M.1
Koenigsknecht, M.J.2
Carlson, P.E.3
-
42
-
-
84898809123
-
The microbiome in inflammatory bowel disease: Current status and the future ahead
-
Kostic AD, Xavier RJ, Gevers D. The microbiome in inflammatory bowel disease: current status and the future ahead. Gastroenterology 2014; 146:1489-1499.
-
(2014)
Gastroenterology
, vol.146
, pp. 1489-1499
-
-
Kostic, A.D.1
Xavier, R.J.2
Gevers, D.3
-
43
-
-
84896092821
-
The treatment-naive microbiome in new-onset Crohn's disease
-
Gevers D, Kugathasan S, Denson LA, et al. The treatment-naive microbiome in new-onset Crohn's disease. Cell Host Microbe 2014; 15:382-392.
-
(2014)
Cell Host Microbe
, vol.15
, pp. 382-392
-
-
Gevers, D.1
Kugathasan, S.2
Denson, L.A.3
-
44
-
-
84905482236
-
Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature
-
Haberman Y, Tickle TL, Dexheimer PJ, et al. Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature. J Clin Invest 2014; 124:3617-3633.
-
(2014)
J Clin Invest
, vol.124
, pp. 3617-3633
-
-
Haberman, Y.1
Tickle, T.L.2
Dexheimer, P.J.3
-
45
-
-
84865494677
-
Systematic review: Faecal microbiota transplantation in the management of inflammatory bowel disease
-
Anderson JL, Edney RJ, Whelan K. Systematic review: faecal microbiota transplantation in the management of inflammatory bowel disease. Aliment Pharmacol Ther 2012; 36:503-516.
-
(2012)
Aliment Pharmacol Ther
, vol.36
, pp. 503-516
-
-
Anderson, J.L.1
Edney, R.J.2
Whelan, K.3
-
46
-
-
84884585915
-
Alteration of intestinal dysbiosis by fecal microbiota transplantation does not induce remission in patients with chronic active ulcerative colitis
-
Kump PK, Grochenig HP, Lackner S, et al. Alteration of intestinal dysbiosis by fecal microbiota transplantation does not induce remission in patients with chronic active ulcerative colitis. Inflamm Bowel Dis 2013; 19:2155-2165.
-
(2013)
Inflamm Bowel Dis
, vol.19
, pp. 2155-2165
-
-
Kump, P.K.1
Grochenig, H.P.2
Lackner, S.3
|