-
2
-
-
0036708443
-
Dynamic flux balance analysis of diauxic growth in Escherichia coli
-
Mahadevan R, Edwards JS, Doyle III FJ: Dynamic flux balance analysis of diauxic growth in Escherichia coli. Biophys J2002, 83:1331-1340.
-
(2002)
Biophys J
, vol.83
, pp. 1331-1340
-
-
-
3
-
-
84872663560
-
A reliable simulator for dynamic flux balance analysis
-
Höffner K, Harwood SM, Barton PI: A reliable simulator for dynamic flux balance analysis. Biotechnol Bioeng2013, 110(3):792-802.
-
(2013)
Biotechnol Bioeng
, vol.110
, Issue.3
, pp. 792-802
-
-
Höffner, K.1
Harwood, S.M.2
Barton, P.I.3
-
4
-
-
79551662521
-
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
-
Schellenberger J, Que R, Fleming RM, Thiele I, Orth JD, Feist AM, Zielinski DC, Bordbar A, Lewis NE, Rahmanian S, Kang J, Hyduke DR, Palsson BØ: Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. Nat Protoc2011, 6:1290-1307.
-
(2011)
Nat Protoc
, vol.6
, pp. 1290-1307
-
-
Schellenberger, J.1
Que, R.2
Fleming, R.M.3
Thiele, I.4
Orth, J.D.5
Feist, A.M.6
Zielinski, D.C.7
Bordbar, A.8
Lewis, N.E.9
Rahmanian, S.10
Kang, J.11
Hyduke, D.R.12
Palsson, B.13
-
5
-
-
78650215306
-
Dynamic flux balance modeling of microbial co-cultures for efficient batch fermentation of glucose and xylose mixtures
-
Hanly TJ, Henson MA: Dynamic flux balance modeling of microbial co-cultures for efficient batch fermentation of glucose and xylose mixtures. Biotechnol Bioeng2011, 108(2):376-385.
-
(2011)
Biotechnol Bioeng
, vol.108
, Issue.2
, pp. 376-385
-
-
Hanly, T.J.1
Henson, M.A.2
-
6
-
-
84894550994
-
ORCA: a COBRA toolbox extension for model-driven discovery and analysis
-
Mao L, Verwoerd WS: ORCA: a COBRA toolbox extension for model-driven discovery and analysis. Bioinformatics2014, 30(4):584-585.
-
(2014)
Bioinformatics
, vol.30
, Issue.4
, pp. 584-585
-
-
Mao, L.1
Verwoerd, W.S.2
-
7
-
-
78751584992
-
Genome-scale dynamic modeling of the competition betweenRhodoferax andGeobacter in anoxic subsurface environments
-
Zhuang K, Izallalen M, Mouser P, Richter H, Risso C, Mahadevan R, Lovley DR: Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments. ISME J2011, 5:305-316.
-
(2011)
ISME J
, vol.5
, pp. 305-316
-
-
Zhuang, K.1
Izallalen, M.2
Mouser, P.3
Richter, H.4
Risso, C.5
Mahadevan, R.6
Lovley, D.R.7
-
8
-
-
84865358026
-
The design of long-term effective uranium bioremediation strategy using a community metabolic model
-
Zhuang K, Ma E, Lovley DR, Mahadevan R: The design of long-term effective uranium bioremediation strategy using a community metabolic model. Biotechnol Bioeng2012, 109:2475-2483.
-
(2012)
Biotechnol Bioeng
, vol.109
, pp. 2475-2483
-
-
Zhuang, K.1
Ma, E.2
Lovley, D.R.3
Mahadevan, R.4
-
9
-
-
1642457253
-
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
-
Mahadevan R, Schilling C: The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. Metab Eng2003, 5:264-276.
-
(2003)
Metab Eng
, vol.5
, pp. 264-276
-
-
Mahadevan, R.1
Schilling, C.2
-
10
-
-
84923878280
-
-
IBM ILOG
-
CPLEX Optimizer, IBM ILOG. http://www-01.ibm.com/software/commerce/optimization/cplex-optimizer/
-
-
-
-
11
-
-
84923878279
-
-
Gurobi Optimization I: Gurobi optimizer reference manual
-
Gurobi Optimization I: Gurobi optimizer reference manual2014. [ http://www.gurobi.com]
-
(2014)
-
-
-
12
-
-
84923878278
-
-
ApS M: The MOSEK optimization toolbox for MATLAB manual. Version 7.0 (Revision 128)
-
ApS M: TheMOSEK optimization toolbox for MATLAB manual. Version 7.0 (Revision 128). [http://docs.mosek.com/7.0/toolbox/]
-
-
-
-
14
-
-
0344328817
-
An expanded genome-scale model ofEscherichia coli K-12 (i JR904 GSM/GPR)
-
Reed JL, Vo TD, Schilling CH, Palsson BØ: An expanded genome-scale model of Escherichia coli K-12 ( i JR904 GSM/GPR). Genome Biol2003, 4(9):R54.
-
(2003)
Genome Biol
, vol.4
, Issue.9
-
-
Reed, J.L.1
Vo, T.D.2
Schilling, C.H.3
Palsson, B.4
-
15
-
-
84923878277
-
Design of microbial consortia for industrial biotechnology.
-
Edited by Eden M, Siirola JD, Towler GP. Cle Elum, Washington, USA: Elsevier
-
Höffner K, Barton PI: Design of microbial consortia for industrial biotechnology. In Proceedings of the Eight International Conference on Foundations of Computer-Aided Process Design. Edited by Eden M, Siirola JD, Towler GP. Cle Elum, Washington, USA: Elsevier; 2014.
-
(2014)
Proceedings of the Eight International Conference on Foundations of Computer-Aided Process Design
-
-
Höffner, K.1
Barton, P.I.2
-
16
-
-
80051537012
-
Metabolic network reconstruction ofChlamydomonas offers insight into light-driven algal metabolism
-
Chang RL, Ghamsari L, Manichaikul A, Hom EF, Balaji S, Fu W, Shen Y, Hao T, Palsson BØ, Salehi-Ashtiani K, Papin JA: Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism. Mol Syst Biol2011, 7:518.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 518
-
-
Chang, R.L.1
Ghamsari, L.2
Manichaikul, A.3
Hom, E.F.4
Balaji, S.5
Fu, W.6
Shen, Y.7
Hao, T.8
Palsson, B.9
Salehi-Ashtiani, K.10
Papin, J.A.11
-
17
-
-
3843128481
-
Reconstruction and validation ofSaccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
-
Duarte NC, Herrgård MJ, Palsson BØ: Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. Genome Res2004, 14(7):1298-1309.
-
(2004)
Genome Res
, vol.14
, Issue.7
, pp. 1298-1309
-
-
Duarte, N.C.1
Herrgård, M.J.2
Palsson, B.3
-
18
-
-
0020642119
-
A dynamic model of the high-rate algal-bacterial wastewater treatment pond
-
Buhr HO, Miller SB: A dynamic model of the high-rate algal-bacterial wastewater treatment pond. Water Res1983, 17:29-37.
-
(1983)
Water Res
, vol.17
, pp. 29-37
-
-
Buhr, H.O.1
Miller, S.B.2
-
19
-
-
0033230932
-
Kinetic models for heterotrophic growth ofChlamydomonas reinhardtii in batch and fed-batch cultures
-
Zhang XW, Chen F, Johns MR: Kinetic models for heterotrophic growth of Chlamydomonas reinhardtii in batch and fed-batch cultures. Process Biochem1999, 35:385-389.
-
(1999)
Process Biochem
, vol.35
, pp. 385-389
-
-
Zhang, X.W.1
Chen, F.2
Johns, M.R.3
-
20
-
-
34247622782
-
2 acquisition in an acid-tolerantChlamydomonas
-
2 acquisition in an acid-tolerant Chlamydomonas. Plant Cell Environ2007, 30:745-752.
-
(2007)
Plant Cell Environ
, vol.30
, pp. 745-752
-
-
Balkos, K.D.1
Colman, B.2
-
21
-
-
84860140643
-
2 supply and utilization in algal ponds
-
2 supply and utilization in algal ponds. Ind Eng Chem Res2011, 50:11181-11192.
-
(2011)
Ind Eng Chem Res
, vol.50
, pp. 11181-11192
-
-
Yang, A.1
-
22
-
-
84255195408
-
AlgaGEM - a genome-scale metabolic reconstruction of algae based on theChlamydomonas reinhardtii genome
-
Gomes de Oliveira Dal'Molin C, Quek LE, Palfreyman RW, Nielsen LK: AlgaGEM - a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome. BMC Genomics2011, 12(Suppl 4):S5.
-
(2011)
BMC Genomics
, vol.12
, pp. S5
-
-
Gomes de Oliveira Dal'Molin, C.1
Quek, L.E.2
Palfreyman, R.W.3
Nielsen, L.K.4
|