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Volumn 15, Issue 12, 2017, Pages 756-771

Evolution and genome architecture in fungal plant pathogens

Author keywords

[No Author keywords available]

Indexed keywords

AGRICULTURE; ECOSYSTEM; FUNGAL PLANT DISEASE; GENE SEQUENCE; GENETIC VARIATION; GENOME; GENOME SIZE; GENOMICS; HETEROKARYON; HETEROZYGOSITY; HORIZONTAL GENE TRANSFER; HOST; HYBRIDIZATION; INTROGRESSION; MOLECULAR EVOLUTION; NONHUMAN; PHENOTYPE; POPULATION GENETICS; PRIORITY JOURNAL; REPRODUCTION; REVIEW; SUPERNUMERARY CHROMOSOME; TRANSPOSON; VIRULENCE; EVOLUTION; FUNGAL GENOME; FUNGUS; GENETICS; MICROBIOLOGY; PHYSIOLOGY; PLANT; PLANT DISEASE;

EID: 85033604561     PISSN: 17401526     EISSN: 17401534     Source Type: Journal    
DOI: 10.1038/nrmicro.2017.76     Document Type: Review
Times cited : (277)

References (145)
  • 1
    • 84859573451 scopus 로고    scopus 로고
    • Emerging fungal threats to animal, plant and ecosystem health
    • Fisher, M., Henk, D. &Briggs, C. Emerging fungal threats to animal, plant and ecosystem health. Nature 484, 186-194 (2012).
    • (2012) Nature , vol.484 , pp. 186-194
    • Fisher, M.1    Henk, D.2    Briggs, C.3
  • 2
    • 33750329972 scopus 로고    scopus 로고
    • Reconstructing the early evolution of Fungi using a six-gene phylogeny
    • James, T. Y. et al. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature 443, 818-822 (2006).
    • (2006) Nature , vol.443 , pp. 818-822
    • James, T.Y.1
  • 3
    • 84928892986 scopus 로고    scopus 로고
    • Fungal effectors and plant susceptibility
    • Lo Presti, L. et al. Fungal effectors and plant susceptibility. Annu. Rev. Plant Biol. 66, 513-545 (2015).
    • (2015) Annu. Rev. Plant Biol. , vol.66 , pp. 513-545
    • Lo Presti, L.1
  • 4
    • 0036029016 scopus 로고    scopus 로고
    • Host-selective toxins and avirulence determinants: What's in a name
    • Wolpert, T. J., Dunkle, L. D. &Ciuffetti, L. M. Host-selective toxins and avirulence determinants: what's in a name? Annu. Rev. Phytopathol. 40, 251-285 (2002).
    • (2002) Annu. Rev. Phytopathol. , vol.40 , pp. 251-285
    • Wolpert, T.J.1    Dunkle, L.D.2    Ciuffetti, L.M.3
  • 5
    • 45249120842 scopus 로고    scopus 로고
    • Host-specific toxins: Effectors of necrotrophic pathogenicity
    • Friesen, T. L., Faris, J. D., Solomon, P. S. &Oliver, R. P. Host-specific toxins: effectors of necrotrophic pathogenicity. Cell. Microbiol. 10, 1421-1428 (2008).
    • (2008) Cell. Microbiol. , vol.10 , pp. 1421-1428
    • Friesen, T.L.1    Faris, J.D.2    Solomon, P.S.3    Oliver, R.P.4
  • 6
    • 78649741789 scopus 로고    scopus 로고
    • Epidermis: The formation and functions of a fundamental plant tissue
    • Javelle, M., Vernoud, V., Rogowsky, P. M. &Ingram, G. C. Epidermis: the formation and functions of a fundamental plant tissue. New Phytol. 189, 17-39 (2011).
    • (2011) New Phytol. , vol.189 , pp. 17-39
    • Javelle, M.1    Vernoud, V.2    Rogowsky, P.M.3    Ingram, G.C.4
  • 7
    • 33751100626 scopus 로고    scopus 로고
    • The plant immune system
    • Jones, J. D. &Dangl, J. L. The plant immune system. Nature 444, 323-329 (2006).
    • (2006) Nature , vol.444 , pp. 323-329
    • Jones, J.D.1    Dangl, J.L.2
  • 8
    • 84885576702 scopus 로고    scopus 로고
    • Fungal small RNAs suppress plant immunity by hijacking host RNA interference pathways
    • Weiberg, A. et al. Fungal small RNAs suppress plant immunity by hijacking host RNA interference pathways. Science 342, 118-123 (2013).
    • (2013) Science , vol.342 , pp. 118-123
    • Weiberg, A.1
  • 9
    • 32544447423 scopus 로고    scopus 로고
    • Localization of Ptr ToxA produced by Pyrenophora tritici-repentis reveals protein import into wheat mesophyll cells
    • Manning, V. A. &Ciuffetti, L. M. Localization of Ptr ToxA produced by Pyrenophora tritici-repentis reveals protein import into wheat mesophyll cells. Plant Cell 17, 3203-3212 (2005).
    • (2005) Plant Cell , vol.17 , pp. 3203-3212
    • Manning, V.A.1    Ciuffetti, L.M.2
  • 10
    • 80055018408 scopus 로고    scopus 로고
    • Metabolic priming by a secreted fungal effector
    • Djamei, A. et al. Metabolic priming by a secreted fungal effector. Nature 478, 395-398 (2011).
    • (2011) Nature , vol.478 , pp. 395-398
    • Djamei, A.1
  • 11
    • 0035933527 scopus 로고    scopus 로고
    • Evolutionary dynamics of plant R-genes
    • Bergelson, J., Kreitman, M., Stahl, E. A. &Tian, D. Evolutionary dynamics of plant R-genes. Science 292, 2281-2285 (2001).
    • (2001) Science , vol.292 , pp. 2281-2285
    • Bergelson, J.1    Kreitman, M.2    Stahl, E.A.3    Tian, D.4
  • 12
    • 73349090580 scopus 로고    scopus 로고
    • Diversity and evolution of effector loci in natural populations of the plant pathogen Melampsora lini
    • Barrett, L. G. et al. Diversity and evolution of effector loci in natural populations of the plant pathogen Melampsora lini. Mol. Biol. Evol. 26, 2499-2513 (2009).
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 2499-2513
    • Barrett, L.G.1
  • 13
    • 33745015480 scopus 로고    scopus 로고
    • Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes
    • Dodds, P. N. et al. Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes. Proc. Natl Acad. Sci. USA 103, 8888-8893 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 8888-8893
    • Dodds, P.N.1
  • 14
    • 84871961578 scopus 로고    scopus 로고
    • Arms race co-evolution of Magnaporthe oryzae AVR-Pik and rice Pik genes driven by their physical interactions
    • Kanzaki, H. et al. Arms race co-evolution of Magnaporthe oryzae AVR-Pik and rice Pik genes driven by their physical interactions. Plant J. 72, 894-907 (2012).
    • (2012) Plant J. , vol.72 , pp. 894-907
    • Kanzaki, H.1
  • 15
    • 82955200227 scopus 로고    scopus 로고
    • The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species
    • Stukenbrock, E. H. et al. The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species. Genome Res. 21, 2157-2166 (2011).
    • (2011) Genome Res. , vol.21 , pp. 2157-2166
    • Stukenbrock, E.H.1
  • 16
    • 84881145993 scopus 로고    scopus 로고
    • Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen
    • de Jonge, R. et al. Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen. Genome Res. 23, 1271-1282 (2013).
    • (2013) Genome Res. , vol.23 , pp. 1271-1282
    • De Jonge, R.1
  • 17
    • 84956468285 scopus 로고    scopus 로고
    • Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species
    • Menardo, F. et al. Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species. Nat. Genet. 48, 201-205 (2016).
    • (2016) Nat. Genet. , vol.48 , pp. 201-205
    • Menardo, F.1
  • 18
    • 77956858683 scopus 로고    scopus 로고
    • Genomic plasticity of the human fungal pathogen Candida albicans
    • Selmecki, A., Forche, A. &Berman, J. Genomic plasticity of the human fungal pathogen Candida albicans. Eukaryot. Cell 9, 991-1008 (2010).
    • (2010) Eukaryot. Cell , vol.9 , pp. 991-1008
    • Selmecki, A.1    Forche, A.2    Berman, J.3
  • 19
    • 81755187011 scopus 로고    scopus 로고
    • Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage
    • Farrer, R. A. et al. Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage. Proc. Natl Acad. Sci. USA 108, 18732-18736 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 18732-18736
    • Farrer, R.A.1
  • 20
    • 84861182813 scopus 로고    scopus 로고
    • Genome evolution in filamentous plant pathogens: Why bigger can be better
    • Raffaele, S. &Kamoun, S. Genome evolution in filamentous plant pathogens: why bigger can be better. Nat. Rev. Microbiol. 10, 417-430 (2012).
    • (2012) Nat. Rev. Microbiol. , vol.10 , pp. 417-430
    • Raffaele, S.1    Kamoun, S.2
  • 21
    • 84896736546 scopus 로고    scopus 로고
    • Sex or no sex: Evolutionary adaptation occurs regardless
    • Seidl, M. F. &Thomma, B. P. Sex or no sex: evolutionary adaptation occurs regardless. Bioessays 36, 335-345 (2014).
    • (2014) Bioessays , vol.36 , pp. 335-345
    • Seidl, M.F.1    Thomma, B.P.2
  • 22
    • 84900826142 scopus 로고    scopus 로고
    • Variability of chromosome structure in pathogenic fungi-of 'ends and odds'
    • Galazka, J. M. &Freitag, M. Variability of chromosome structure in pathogenic fungi-of 'ends and odds'. Curr. Opin. Microbiol. 20, 19-26 (2014).
    • (2014) Curr. Opin. Microbiol. , vol.20 , pp. 19-26
    • Galazka, J.M.1    Freitag, M.2
  • 23
    • 16544393499 scopus 로고    scopus 로고
    • Host-parasite coevolutionary conflict between Arabidopsis and Downy Mildew
    • Allen, R. L. et al. Host-parasite coevolutionary conflict between Arabidopsis and Downy Mildew. Science 306, 1957-1960 (2004).
    • (2004) Science , vol.306 , pp. 1957-1960
    • Allen, R.L.1
  • 24
    • 80053384429 scopus 로고    scopus 로고
    • Whole-genome sequencing of multiple Arabidopsis thaliana populations
    • Cao, J. et al. Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nat. Genet. 43, 956-963 (2011).
    • (2011) Nat. Genet. , vol.43 , pp. 956-963
    • Cao, J.1
  • 25
    • 84859423134 scopus 로고    scopus 로고
    • Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation
    • Thrall, P. H. et al. Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation. Ecol. Lett. 15, 425-435 (2012).
    • (2012) Ecol. Lett. , vol.15 , pp. 425-435
    • Thrall, P.H.1
  • 26
    • 84901466848 scopus 로고    scopus 로고
    • Host ecotype generates evolutionary and epidemiological divergence across a pathogen metapopulation
    • Laine, A.-L., Burdon, J. J., Nemri, A. &Thrall, P. H. Host ecotype generates evolutionary and epidemiological divergence across a pathogen metapopulation. Proc. R. Soc. B Biol. Sci. 281, 20140522 (2014).
    • (2014) Proc. R. Soc. B Biol. Sci. , vol.281 , pp. 20140522
    • Laine, A.-L.1    Burdon, J.J.2    Nemri, A.3    Thrall, P.H.4
  • 27
    • 85011344686 scopus 로고    scopus 로고
    • The escalatory Red Queen: Population extinction and replacement following arms-race dynamics in poplar rust
    • Persoons, A. et al. The escalatory Red Queen: population extinction and replacement following arms-race dynamics in poplar rust. Mol. Ecol. 26, 1902-1918 (2016).
    • (2016) Mol. Ecol. , vol.26 , pp. 1902-1918
    • Persoons, A.1
  • 28
    • 84870847734 scopus 로고    scopus 로고
    • Genome structure and reproductive behaviour influence the evolutionary potential of a fungal phytopathogen
    • Daverdin, G. et al. Genome structure and reproductive behaviour influence the evolutionary potential of a fungal phytopathogen. PLoS Pathog. 8, e1003020 (2012).
    • (2012) PLoS Pathog. , vol.8 , pp. e1003020
    • Daverdin, G.1
  • 29
    • 84875420788 scopus 로고    scopus 로고
    • Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
    • Rouxel, T. et al. Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations. Nat. Commun. 2, 202 (2011).
    • (2011) Nat. Commun. , vol.2 , pp. 202
    • Rouxel, T.1
  • 30
    • 0037178717 scopus 로고    scopus 로고
    • Aerial dispersal of pathogens on the global and continental scales and its impact on plant disease
    • Brown, J. K. &Hovmøller, M. S. Aerial dispersal of pathogens on the global and continental scales and its impact on plant disease. Science 297, 537-541 (2002).
    • (2002) Science , vol.297 , pp. 537-541
    • Brown, J.K.1    Hovmøller, M.S.2
  • 31
    • 84989315832 scopus 로고    scopus 로고
    • Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae
    • Islam, M. T. et al. Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae. BMC Biol. 14, 84 (2016).
    • (2016) BMC Biol. , vol.14 , pp. 84
    • Islam, M.T.1
  • 32
    • 85033590842 scopus 로고    scopus 로고
    • Wheat blast disease caused by Pyricularia graminis-tritici sp
    • Castroagudin, V. L. et al. Wheat blast disease caused by Pyricularia graminis-tritici sp. nov. Preprint at bioRxiv http://dx.doi.org/10.1101/051151 (2016).
    • (2016) Nov. Preprint at BioRxiv
    • Castroagudin, V.L.1
  • 33
    • 0035088871 scopus 로고    scopus 로고
    • Rapid evolution of introduced plant pathogens via interspecific hybridization
    • Brasier, C. M. Rapid evolution of introduced plant pathogens via interspecific hybridization. Bioscience 51, 123 (2001).
    • (2001) Bioscience , vol.51 , pp. 123
    • Brasier, C.M.1
  • 34
    • 74249088824 scopus 로고    scopus 로고
    • Rapid emergence of hybrids between the two subspecies of Ophiostoma novo-ulmi with a high level of pathogenic fitness
    • Brasier, C. M. &Kirk, S. A. Rapid emergence of hybrids between the two subspecies of Ophiostoma novo-ulmi with a high level of pathogenic fitness. Plant Pathol. 59, 186-199 (2010).
    • (2010) Plant Pathol. , vol.59 , pp. 186-199
    • Brasier, C.M.1    Kirk, S.A.2
  • 35
    • 84992445975 scopus 로고    scopus 로고
    • Rapid emergence of pathogens in agro-ecosystems: Global threats to agricultural sustainability and food security
    • McDonald, B. A. &Stukenbrock, E. H. Rapid emergence of pathogens in agro-ecosystems: global threats to agricultural sustainability and food security. Phil. Trans. R. Soc. B 371, 20160026 (2016).
    • (2016) Phil. Trans. R. Soc. B , vol.371 , pp. 20160026
    • McDonald, B.A.1    Stukenbrock, E.H.2
  • 36
    • 84881257280 scopus 로고    scopus 로고
    • Evolution, selection and isolation: A genomic view of speciation in fungal plant pathogens
    • Stukenbrock, E. H. Evolution, selection and isolation: a genomic view of speciation in fungal plant pathogens. New Phytol. 199, 895-907 (2013).
    • (2013) New Phytol. , vol.199 , pp. 895-907
    • Stukenbrock, E.H.1
  • 37
    • 80051759269 scopus 로고    scopus 로고
    • Plant-parasite coevolution: Bridging the gap between genetics and ecology
    • Brown, J. K. &Tellier, A. Plant-parasite coevolution: bridging the gap between genetics and ecology. Annu. Rev. Phytopathol. 49, 345-367 (2011).
    • (2011) Annu. Rev. Phytopathol. , vol.49 , pp. 345-367
    • Brown, J.K.1    Tellier, A.2
  • 38
    • 84864588388 scopus 로고    scopus 로고
    • Balancing selection at the tomato RCR3 guardee gene family maintains variation in strength of pathogen defense
    • Hörger, A. C. et al. Balancing selection at the tomato RCR3 guardee gene family maintains variation in strength of pathogen defense. PLoS Genet. 8, e1002813 (2012).
    • (2012) PLoS Genet. , vol.8 , pp. e1002813
    • Hörger, A.C.1
  • 39
    • 84905230182 scopus 로고    scopus 로고
    • Speed of adaptation and genomic footprints of host-parasite coevolution under arms race and trench warfare dynamics
    • Tellier, A., Moreno-Gámez, S. &Stephan, W. Speed of adaptation and genomic footprints of host-parasite coevolution under arms race and trench warfare dynamics. Evolution. 68, 2211-2224 (2014).
    • (2014) Evolution. , vol.68 , pp. 2211-2224
    • Tellier, A.1    Moreno-Gámez, S.2    Stephan, W.3
  • 41
    • 85011340482 scopus 로고    scopus 로고
    • Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates
    • Badouin, H. et al. Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates. Mol. Ecol. 26, 2041-2062 (2016).
    • (2016) Mol. Ecol. , vol.26 , pp. 2041-2062
    • Badouin, H.1
  • 42
    • 79960957443 scopus 로고    scopus 로고
    • Multiple translocation of the AVR-Pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species
    • Chuma, I. et al. Multiple translocation of the AVR-Pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species. PLoS Pathog. 7, e1002147 (2011).
    • (2011) PLoS Pathog. , vol.7 , pp. e1002147
    • Chuma, I.1
  • 43
    • 77949714038 scopus 로고    scopus 로고
    • Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
    • Ma, L.-J. et al. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature 464, 367-373 (2010).
    • (2010) Nature , vol.464 , pp. 367-373
    • Ma, L.-J.1
  • 44
    • 84982953280 scopus 로고    scopus 로고
    • Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen
    • Faino, L. et al. Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen. Genome Res. 26, 1091-1100 (2016).
    • (2016) Genome Res. , vol.26 , pp. 1091-1100
    • Faino, L.1
  • 45
    • 79959834134 scopus 로고    scopus 로고
    • Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis
    • Goodwin, S. B. et al. Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis. PLoS Genet. 7, e1002070 (2011).
    • (2011) PLoS Genet. , vol.7 , pp. e1002070
    • Goodwin, S.B.1
  • 46
    • 70149110707 scopus 로고    scopus 로고
    • The genome of Nectria haematococca: Contribution of supernumerary chromosomes to gene expansion
    • Coleman, J. J. et al. The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion. PLoS Genet. 5, e1000618 (2009).
    • (2009) PLoS Genet. , vol.5 , pp. e1000618
    • Coleman, J.J.1
  • 47
    • 84959300690 scopus 로고    scopus 로고
    • Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
    • Williams, A. H. et al. Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics 17, 191 (2016).
    • (2016) BMC Genomics , vol.17 , pp. 191
    • Williams, A.H.1
  • 48
    • 85014820526 scopus 로고    scopus 로고
    • A tale of genome compartmentalization: The evolution of virulence clusters in smut fungi
    • Dutheil, J. Y. et al. A tale of genome compartmentalization: the evolution of virulence clusters in smut fungi. Genome Biol. Evol. 8, 681-704 (2016).
    • (2016) Genome Biol. Evol. , vol.8 , pp. 681-704
    • Dutheil, J.Y.1
  • 49
    • 84943519161 scopus 로고    scopus 로고
    • The two-speed genomes of filamentous pathogens: Waltz with plants
    • Dong, S., Raffaele, S. &Kamoun, S. The two-speed genomes of filamentous pathogens: waltz with plants. Curr. Opin. Genet. Dev. 35, 57-65 (2015).
    • (2015) Curr. Opin. Genet. Dev. , vol.35 , pp. 57-65
    • Dong, S.1    Raffaele, S.2    Kamoun, S.3
  • 50
    • 78650695340 scopus 로고    scopus 로고
    • Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola
    • Stukenbrock, E. H. et al. Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola. PLoS Genet. 6, e1001189 (2010).
    • (2010) PLoS Genet. , vol.6 , pp. e1001189
    • Stukenbrock, E.H.1
  • 52
    • 0026348015 scopus 로고
    • A fungal gene for antibiotic resistance on a dispensable ('B') chromosome
    • Miao, V. P., Covert, S. F. &VanEtten, H. D. A fungal gene for antibiotic resistance on a dispensable ('B') chromosome. Science 254, 1773 (1991).
    • (1991) Science , vol.254 , pp. 1773
    • Miao, V.P.1    Covert, S.F.2    VanEtten, H.D.3
  • 53
    • 0036935511 scopus 로고    scopus 로고
    • Distribution of the pea pathogenicity (PEP) genes in the fungus Nectria haematococca mating population VI
    • Temporini, E. D. &VanEtten, H. D. Distribution of the pea pathogenicity (PEP) genes in the fungus Nectria haematococca mating population VI. Curr. Genet. 41, 107-114 (2002).
    • (2002) Curr. Genet. , vol.41 , pp. 107-114
    • Temporini, E.D.1    VanEtten, H.D.2
  • 54
    • 85000869940 scopus 로고    scopus 로고
    • Transcription factors encoded on core and accessory chromosomes of Fusarium oxysporum induce expression of effector genes
    • van der Does, H. C. et al. Transcription factors encoded on core and accessory chromosomes of Fusarium oxysporum induce expression of effector genes. PLoS Genet. 12, e1006401 (2016).
    • (2016) PLoS Genet. , vol.12 , pp. e1006401
    • Van Der Does, H.C.1
  • 55
    • 67649200210 scopus 로고    scopus 로고
    • Meiosis drives extraordinary genome plasticity in the haploid fungal plant pathogen Mycosphaerella graminicola
    • Wittenberg, A. H. J. et al. Meiosis drives extraordinary genome plasticity in the haploid fungal plant pathogen Mycosphaerella graminicola. PLoS ONE 4, e5863 (2009).
    • (2009) PLoS ONE , vol.4 , pp. e5863
    • Wittenberg, A.H.J.1
  • 56
    • 84879670944 scopus 로고    scopus 로고
    • Breakage-fusion-bridge cycles and large insertions contribute to the rapid evolution of accessory chromosomes in a fungal pathogen
    • Croll, D., Zala, M. &McDonald, B. A. Breakage-fusion-bridge cycles and large insertions contribute to the rapid evolution of accessory chromosomes in a fungal pathogen. PLoS Genet. 9, e1003567 (2013).
    • (2013) PLoS Genet. , vol.9 , pp. e1003567
    • Croll, D.1    Zala, M.2    McDonald, B.A.3
  • 57
    • 85013128250 scopus 로고    scopus 로고
    • Quantitative trait locus mapping reveals complex genetic architecture of quantitative virulence in the wheat pathogen Zymoseptoria tritici
    • Stewart, E. l. et al. Quantitative trait locus mapping reveals complex genetic architecture of quantitative virulence in the wheat pathogen Zymoseptoria tritici. Mol. Plant Pathol. http://dx.doi.org/10.1111/ mpp.12515 (2017).
    • (2017) Mol. Plant Pathol.
    • Stewart, E.L.1
  • 58
    • 84994469211 scopus 로고    scopus 로고
    • The evolution of orphan regions in genomes of a fungal pathogen of wheat
    • Plissonneau, C. &Stürchler, A. The evolution of orphan regions in genomes of a fungal pathogen of wheat. mBio 7, e01231-16 (2016).
    • (2016) MBio , vol.7 , pp. e01231-e01316
    • Plissonneau, C.1    Stürchler, A.2
  • 59
    • 84957094946 scopus 로고    scopus 로고
    • Genome sequencing of multiple isolates highlights subtelomeric genomic diversity within Fusarium fujikuroi
    • Chiara, M. et al. Genome sequencing of multiple isolates highlights subtelomeric genomic diversity within Fusarium fujikuroi. Genome Biol. Evol. 7, 3062-3069 (2015).
    • (2015) Genome Biol. Evol. , vol.7 , pp. 3062-3069
    • Chiara, M.1
  • 60
    • 84897438553 scopus 로고    scopus 로고
    • Epigenetic control of effector gene expression in the plant pathogenic fungus Leptosphaeria maculans
    • Soyer, J. L. et al. Epigenetic control of effector gene expression in the plant pathogenic fungus Leptosphaeria maculans. PLoS Genet. 10, e1004227 (2014).
    • (2014) PLoS Genet. , vol.10 , pp. e1004227
    • Soyer, J.L.1
  • 61
    • 84942891889 scopus 로고    scopus 로고
    • Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes
    • Schotanus, K. et al. Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes. Epigenetics Chromatin 8, 1 (2015).
    • (2015) Epigenetics Chromatin , vol.8 , pp. 1
    • Schotanus, K.1
  • 62
    • 84923643695 scopus 로고    scopus 로고
    • Expression profiling of the wheat pathogen Zymoseptoria tritici reveals genomic patterns of transcription and host-specific regulatory programs
    • Kellner, R. et al. Expression profiling of the wheat pathogen Zymoseptoria tritici reveals genomic patterns of transcription and host-specific regulatory programs. Genome Biol. Evol. 6, 1353-1365 (2014).
    • (2014) Genome Biol. Evol. , vol.6 , pp. 1353-1365
    • Kellner, R.1
  • 63
    • 0034616952 scopus 로고    scopus 로고
    • Short TpA-rich segments of the ζ-η Region induce DNA methylation in Neurospora crassa
    • Miao, V. P., Freitag, M. &Selker, E. U. Short TpA-rich segments of the ζ-η region induce DNA methylation in Neurospora crassa. J. Mol. Biol. 300, 249-273 (2000).
    • (2000) J. Mol. Biol. , vol.300 , pp. 249-273
    • Miao, V.P.1    Freitag, M.2    Selker, E.U.3
  • 64
    • 0037379426 scopus 로고    scopus 로고
    • Synthesis of signals for de novo DNA methylation in Neurospora crassa
    • Tamaru, H. &Selker, E. U. Synthesis of signals for de novo DNA methylation in Neurospora crassa. Mol. Cell. Biol. 23, 2379-2394 (2003).
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 2379-2394
    • Tamaru, H.1    Selker, E.U.2
  • 65
    • 84924992957 scopus 로고    scopus 로고
    • Degeneration of the non-recombining regions in the mating-type chromosomes of the anther-smut fungi
    • Fontanillas, E. et al. Degeneration of the non-recombining regions in the mating-type chromosomes of the anther-smut fungi. Mol. Biol. Evol. 32, 928-943 (2014).
    • (2014) Mol. Biol. Evol. , vol.32 , pp. 928-943
    • Fontanillas, E.1
  • 66
    • 33750597877 scopus 로고    scopus 로고
    • Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis
    • Kämper, J. et al. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature 444, 97-101 (2006).
    • (2006) Nature , vol.444 , pp. 97-101
    • Kämper, J.1
  • 67
    • 78650100793 scopus 로고    scopus 로고
    • Pathogenicity determinants in smut fungi revealed by genome comparison
    • Schirawski, J. et al. Pathogenicity determinants in smut fungi revealed by genome comparison. Science 330, 1546-1548 (2010).
    • (2010) Science , vol.330 , pp. 1546-1548
    • Schirawski, J.1
  • 68
    • 84946900562 scopus 로고    scopus 로고
    • The impact of recombination hotspots on genome evolution of a fungal plant pathogen
    • Croll, D., Lendenmann, M. H., Stewart, E. &McDonald, B. A. The impact of recombination hotspots on genome evolution of a fungal plant pathogen. Genetics 201, 1213-1228 (2015).
    • (2015) Genetics , vol.201 , pp. 1213-1228
    • Croll, D.1    Lendenmann, M.H.2    Stewart, E.3    McDonald, B.A.4
  • 69
    • 84868159385 scopus 로고    scopus 로고
    • Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi
    • Ohm, R. A. et al. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. PLoS Pathog. 8, e1003037 (2012).
    • (2012) PLoS Pathog. , vol.8 , pp. e1003037
    • Ohm, R.A.1
  • 70
    • 85033554519 scopus 로고    scopus 로고
    • A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi
    • Hane, J. K. et al. A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi. Genome Biol. 12, 1 (2011).
    • (2011) Genome Biol. , vol.12 , pp. 1
    • Hane, J.K.1
  • 71
    • 84988878335 scopus 로고    scopus 로고
    • Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens
    • Grandaubert, J. et al. Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens. BMC Genomics 15, 891 (2014).
    • (2014) BMC Genomics , vol.15 , pp. 891
    • Grandaubert, J.1
  • 72
    • 84984878695 scopus 로고    scopus 로고
    • Comparative genomics of the sigatoka disease complex on banana suggests a link between parallel evolutionary changes in Pseudocercospora fijiensis and Pseudocercospora eumusae and increased virulence on the banana host
    • Chang, T.-C. et al. Comparative genomics of the sigatoka disease complex on banana suggests a link between parallel evolutionary changes in Pseudocercospora fijiensis and Pseudocercospora eumusae and increased virulence on the banana host. PLoS Genet. 12, e1005904 (2016).
    • (2016) PLoS Genet. , vol.12 , pp. e1005904
    • Chang, T.-C.1
  • 73
    • 79959340303 scopus 로고    scopus 로고
    • Obligate biotrophy features unraveled by the genomic analysis of rust fungi
    • Duplessis, S. et al. Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc. Natl Acad. Sci. USA 108, 9166-9171 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 9166-9171
    • Duplessis, S.1
  • 74
    • 85021198756 scopus 로고    scopus 로고
    • Comparative 'omics' of the Fusarium fujikuroi species complex highlights differences in genetic potential and metabolite synthesis
    • Niehaus, E.-M. et al. Comparative 'omics' of the Fusarium fujikuroi species complex highlights differences in genetic potential and metabolite synthesis. Genome Biol. Evol. 8, 3574 (2016).
    • (2016) Genome Biol. Evol. , vol.8 , pp. 3574
    • Niehaus, E.-M.1
  • 76
    • 0036028757 scopus 로고    scopus 로고
    • Pathogen population genetics, evolutionary potential, and durable resistance
    • McDonald, B. A. &Linde, C. Pathogen population genetics, evolutionary potential, and durable resistance. Annu. Rev. Phytopathol. 40, 349-379 (2002).
    • (2002) Annu. Rev. Phytopathol. , vol.40 , pp. 349-379
    • McDonald, B.A.1    Linde, C.2
  • 77
    • 0037458086 scopus 로고    scopus 로고
    • Genome evolution: Recombination speeds up adaptive evolution
    • Marais, G. &Charlesworth, B. Genome evolution: recombination speeds up adaptive evolution. Curr. Biol. 13, R68-R70 (2003).
    • (2003) Curr. Biol. , vol.13 , pp. R68-R70
    • Marais, G.1    Charlesworth, B.2
  • 79
    • 85039897325 scopus 로고    scopus 로고
    • Comparison of fine-scale recombination maps in fungal plant pathogens reveals dynamic recombination landscapes and intragenic hotspots
    • Stukenbrock, E. H. &Dutheil, J. Y. Comparison of fine-scale recombination maps in fungal plant pathogens reveals dynamic recombination landscapes and intragenic hotspots. Preprint at bioRxiv https://dx.doi.org/10.1101/158907 (2017).
    • (2017) Preprint at BioRxiv
    • Stukenbrock, E.H.1    Dutheil, J.Y.2
  • 80
    • 53049104947 scopus 로고    scopus 로고
    • Development of microsatellite markers and construction of genetic map in rice blast pathogen Magnaporthe grisea
    • Zheng, Y. et al. Development of microsatellite markers and construction of genetic map in rice blast pathogen Magnaporthe grisea. Fungal Genet. Biol. 45, 1340-1347 (2008).
    • (2008) Fungal Genet. Biol. , vol.45 , pp. 1340-1347
    • Zheng, Y.1
  • 81
    • 84947939994 scopus 로고    scopus 로고
    • Genome-wide analysis of Fusarium graminearum field populations reveals hotspots of recombination
    • Talas, F. &McDonald, B. A. Genome-wide analysis of Fusarium graminearum field populations reveals hotspots of recombination. BMC Genomics 16, 996 (2015).
    • (2015) BMC Genomics , vol.16 , pp. 996
    • Talas, F.1    McDonald, B.A.2
  • 82
    • 0001224667 scopus 로고
    • Some genetic aspects of sex
    • Muller, H. J. Some genetic aspects of sex. Am. Nat. 66, 118-138 (1932).
    • (1932) Am. Nat. , vol.66 , pp. 118-138
    • Muller, H.J.1
  • 83
    • 0032693223 scopus 로고    scopus 로고
    • The evolution of asexual fungi: Reproduction, speciation and classification
    • Taylor, J. W., Jacobson, D. J. &Fisher, M. C. The evolution of asexual fungi: reproduction, speciation and classification. Annu. Rev. Phytopathol. 37, 197-246 (1999).
    • (1999) Annu. Rev. Phytopathol. , vol.37 , pp. 197-246
    • Taylor, J.W.1    Jacobson, D.J.2    Fisher, M.C.3
  • 84
    • 84911408394 scopus 로고    scopus 로고
    • Recombination between clonal lineages of the asexual fungus Verticillium dahliae detected by genotyping by sequencing
    • Milgroom, M. G., del Mar Jiménez-Gasco, M., García, C. O., Drott, M. T. &Jiménez-Díaz, R. M. Recombination between clonal lineages of the asexual fungus Verticillium dahliae detected by genotyping by sequencing. PLoS ONE 9, e106740 (2014).
    • (2014) PLoS ONE , vol.9 , pp. e106740
    • Milgroom, M.G.1    Del Mar Jiménez-Gasco, M.2    García, C.O.3    Drott, M.T.4    Jiménez-Díaz, R.M.5
  • 85
    • 84911423460 scopus 로고    scopus 로고
    • Maintenance of sex-related genes and the co-occurrence of both mating types in Verticillium dahliae
    • Short, D. P. G., Gurung, S., Hu, X., Inderbitzin, P. &Subbarao, K. V. Maintenance of sex-related genes and the co-occurrence of both mating types in Verticillium dahliae. PLoS ONE 9, e112145 (2014).
    • (2014) PLoS ONE , vol.9 , pp. e112145
    • Short, D.P.G.1    Gurung, S.2    Hu, X.3    Inderbitzin, P.4    Subbarao, K.V.5
  • 86
    • 84884541941 scopus 로고    scopus 로고
    • Unisexual and heterosexual meiotic reproduction generate aneuploidy and phenotypic diversity de novo in the yeast Cryptococcus neoformans
    • Ni, M. et al. Unisexual and heterosexual meiotic reproduction generate aneuploidy and phenotypic diversity de novo in the yeast Cryptococcus neoformans. PLoS Biol. 11, e1001653 (2013).
    • (2013) PLoS Biol. , vol.11 , pp. e1001653
    • Ni, M.1
  • 87
    • 22144439059 scopus 로고    scopus 로고
    • Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice
    • Couch, B. C. et al. Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice. Genetics 170, 613-630 (2005).
    • (2005) Genetics , vol.170 , pp. 613-630
    • Couch, B.C.1
  • 88
    • 77951973678 scopus 로고    scopus 로고
    • Century-old mystery of Puccinia striiformis life history solved with the identification of Berberis as an alternate host
    • Jin, Y., Szarbo, L. J. &Carson, M. Century-old mystery of Puccinia striiformis life history solved with the identification of Berberis as an alternate host. Phytopathology 100, 432-435 (2010).
    • (2010) Phytopathology , vol.100 , pp. 432-435
    • Jin, Y.1    Szarbo, L.J.2    Carson, M.3
  • 89
    • 79959642411 scopus 로고    scopus 로고
    • The genetic structure of the plant pathogenic fungus Melampsora larici-populina on its wild host is extensively impacted by host domestication
    • Xhaard, C. et al. The genetic structure of the plant pathogenic fungus Melampsora larici-populina on its wild host is extensively impacted by host domestication. Mol. Ecol. 20, 2739-2755 (2011).
    • (2011) Mol. Ecol. , vol.20 , pp. 2739-2755
    • Xhaard, C.1
  • 90
    • 84892993233 scopus 로고    scopus 로고
    • Origin, migration routes and worldwide population genetic structure of the wheat yellow rust pathogen Puccinia striiformis f.sp
    • Ali, S. et al. Origin, migration routes and worldwide population genetic structure of the wheat yellow rust pathogen Puccinia striiformis f.sp. tritici. PLoS Pathog. 10, e1003903 (2014).
    • (2014) Tritici. PLoS Pathog. , vol.10 , pp. e1003903
    • Ali, S.1
  • 91
    • 84862776903 scopus 로고    scopus 로고
    • Sex at the origin: An Asian population of the rice blast fungus Magnaporthe oryzae reproduces sexually
    • Saleh, D. et al. Sex at the origin: an Asian population of the rice blast fungus Magnaporthe oryzae reproduces sexually. Mol. Ecol. 21, 1330-1344 (2012).
    • (2012) Mol. Ecol. , vol.21 , pp. 1330-1344
    • Saleh, D.1
  • 92
    • 77956343720 scopus 로고    scopus 로고
    • Reduction in the sex ability of worldwide clonal populations of Puccinia striiformis f.sp tritici
    • Ali, S., Leconte, M., Walker, A. S., Enjalbert, J. &Vallavieille-Pope, C. Reduction in the sex ability of worldwide clonal populations of Puccinia striiformis f.sp tritici. Fungal Genet. Biol. 47, 828-838 (2010).
    • (2010) Fungal Genet. Biol. , vol.47 , pp. 828-838
    • Ali, S.1    Leconte, M.2    Walker, A.S.3    Enjalbert, J.4    Vallavieille-Pope, C.5
  • 93
    • 84879518935 scopus 로고    scopus 로고
    • Epigenetics of filamentous fungi
    • Smith, K. M. et al. Epigenetics of filamentous fungi. Rev. Cell Biol. Mol. Med. http://dx.doi.org/ 10.1002/3527600906.mcb.201100035 (2012).
    • (2012) Rev. Cell Biol. Mol. Med.
    • Smith, K.M.1
  • 94
    • 78751657937 scopus 로고    scopus 로고
    • Accidental amplification and inactivation of a methyltransferase gene eliminates cytosine methylation in Mycosphaerella graminicola
    • Dhillon, B., Cavaletto, J. R., Wood, K. V. &Goodwin, S. B. Accidental amplification and inactivation of a methyltransferase gene eliminates cytosine methylation in Mycosphaerella graminicola. Genetics 186, 67-77 (2010).
    • (2010) Genetics , vol.186 , pp. 67-77
    • Dhillon, B.1    Cavaletto, J.R.2    Wood, K.V.3    Goodwin, S.B.4
  • 95
    • 80051997952 scopus 로고    scopus 로고
    • Dynamic interactions between transposable elements and their hosts
    • Levin, H. L. &Moran, J. V. Dynamic interactions between transposable elements and their hosts. Nat. Rev. Genet. 12, 615-627 (2011).
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 615-627
    • Levin, H.L.1    Moran, J.V.2
  • 96
    • 0141468761 scopus 로고    scopus 로고
    • Transposable elements in filamentous fungi
    • Daboussi, M.-J. &Capy, P. Transposable elements in filamentous fungi. Annu. Rev. Microbiol. 57, 275-299 (2003).
    • (2003) Annu. Rev. Microbiol. , vol.57 , pp. 275-299
    • Daboussi, M.-J.1    Capy, P.2
  • 97
    • 0033800838 scopus 로고    scopus 로고
    • Stress and transposable elements: Co-evolution or useful parasites
    • Capy, P., Gasperi, G., Biémont, C. &Bazin, C. Stress and transposable elements: co-evolution or useful parasites? Heredity (Edinb.) 85, 101-106 (2000).
    • (2000) Heredity (Edinb.) , vol.85 , pp. 101-106
    • Capy, P.1    Gasperi, G.2    Biémont, C.3    Bazin, C.4
  • 98
    • 33750465172 scopus 로고    scopus 로고
    • The fate of transposable elements in asexual populations
    • Dolgin, E. S. &Charlesworth, B. The fate of transposable elements in asexual populations. Genetics 174, 817-827 (2006).
    • (2006) Genetics , vol.174 , pp. 817-827
    • Dolgin, E.S.1    Charlesworth, B.2
  • 99
    • 0345306751 scopus 로고    scopus 로고
    • The origins of genome complexity
    • Lynch, M. &Conery, J. S. The origins of genome complexity. Science 302, 1401-1404 (2003).
    • (2003) Science , vol.302 , pp. 1401-1404
    • Lynch, M.1    Conery, J.S.2
  • 100
    • 77956595578 scopus 로고    scopus 로고
    • Genetic discontinuities and disequilibria in recently established populations of the plant pathogenic fungus Mycosphaerella fijiensis
    • Halkett, F. et al. Genetic discontinuities and disequilibria in recently established populations of the plant pathogenic fungus Mycosphaerella fijiensis. Mol. Ecol. 19, 3909-3923 (2010).
    • (2010) Mol. Ecol. , vol.19 , pp. 3909-3923
    • Halkett, F.1
  • 101
    • 40549143392 scopus 로고    scopus 로고
    • Ustilago maydis populations tracked maize through domestication and cultivation in the Americas
    • Munkacsi, A. B., Stoxen, S. &May, G. Ustilago maydis populations tracked maize through domestication and cultivation in the Americas. Proc. R. Soc. B Biol. Sci. 275, 1037-1046 (2008).
    • (2008) Proc. R. Soc. B Biol. Sci. , vol.275 , pp. 1037-1046
    • Munkacsi, A.B.1    Stoxen, S.2    May, G.3
  • 102
    • 80053053491 scopus 로고    scopus 로고
    • Evidence of the accumulation of allele-specific non-synonymous substitutions in the young region of recombination suppression within the mating-type chromosomes of Neurospora tetrasperma
    • Whittle, C. A. &Johannesson, H. Evidence of the accumulation of allele-specific non-synonymous substitutions in the young region of recombination suppression within the mating-type chromosomes of Neurospora tetrasperma. Heredity (Edinb.) 107, 305-314 (2011).
    • (2011) Heredity (Edinb.) , vol.107 , pp. 305-314
    • Whittle, C.A.1    Johannesson, H.2
  • 103
    • 84939453825 scopus 로고    scopus 로고
    • Chaos of rearrangements in the mating-type chromosomes of the anther-smut fungus Microbotryum lychnidis-dioicae
    • Badouin, H. et al. Chaos of rearrangements in the mating-type chromosomes of the anther-smut fungus Microbotryum lychnidis-dioicae. Genetics 200, 1275-1284 (2015).
    • (2015) Genetics , vol.200 , pp. 1275-1284
    • Badouin, H.1
  • 104
    • 84931267244 scopus 로고    scopus 로고
    • Sex and parasites: Genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus
    • Perlin, M. H. et al. Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus. BMC Genomics 16, 1 (2015).
    • (2015) BMC Genomics , vol.16 , pp. 1
    • Perlin, M.H.1
  • 107
    • 51249085666 scopus 로고    scopus 로고
    • Evolutionary significance of imbalanced nuclear ratios within heterokaryons of the Basidiomycete fungus Heterobasidion parviporum
    • James, T. Y., Stenlid, J., Olson, Å. &Johannesson, H. Evolutionary significance of imbalanced nuclear ratios within heterokaryons of the Basidiomycete fungus Heterobasidion parviporum. Evolution. 62, 2279-2296 (2008).
    • (2008) Evolution. , vol.62 , pp. 2279-2296
    • James, T.Y.1    Stenlid, J.2    Olson, Å.3    Johannesson, H.4
  • 108
    • 0035942837 scopus 로고    scopus 로고
    • Plant pathogens: Mitochondrial control of fungal hybrid virulence
    • Olson, A. &Stenlid, J. Plant pathogens: mitochondrial control of fungal hybrid virulence. Nature 411, 438 (2001).
    • (2001) Nature , vol.411 , pp. 438
    • Olson, A.1    Stenlid, J.2
  • 109
    • 84889261375 scopus 로고    scopus 로고
    • High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus
    • Zheng, W. et al. High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus. Nat. Commun. 4, 2673 (2013).
    • (2013) Nat. Commun. , vol.4 , pp. 2673
    • Zheng, W.1
  • 110
    • 84958965109 scopus 로고    scopus 로고
    • The role of hybridization in the evolution and emergence of new fungal plant pathogens
    • Stukenbrock, E. H. The role of hybridization in the evolution and emergence of new fungal plant pathogens. Phytopathology 106, 104-112 (2016).
    • (2016) Phytopathology , vol.106 , pp. 104-112
    • Stukenbrock, E.H.1
  • 111
    • 84863593823 scopus 로고    scopus 로고
    • Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species
    • Stukenbrock, E. H., Christiansen, F. B., Hansen, T. T., Dutheil, J. Y. &Schierup, M. H. Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species. Proc. Natl Acad. Sci. USA 109, 10954-10959 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 10954-10959
    • Stukenbrock, E.H.1    Christiansen, F.B.2    Hansen, T.T.3    Dutheil, J.Y.4    Schierup, M.H.5
  • 112
    • 79953063523 scopus 로고    scopus 로고
    • The ascomycete Verticillium longisporum is a hybrid and a plant pathogen with an expanded host range
    • Inderbitzin, P., Davis, R. M., Bostock, R. M. &Subbarao, K. V. The ascomycete Verticillium longisporum is a hybrid and a plant pathogen with an expanded host range. PLoS ONE 6, e18260 (2011).
    • (2011) PLoS ONE , vol.6 , pp. e18260
    • Inderbitzin, P.1    Davis, R.M.2    Bostock, R.M.3    Subbarao, K.V.4
  • 113
    • 84926483256 scopus 로고    scopus 로고
    • Vegetative hyphal fusion and subsequent nuclear behavior in Epichloë grass endophytes
    • Shoji, J.-Y., Charlton, N. D., Yi, M., Young, C. A. &Craven, K. D. Vegetative hyphal fusion and subsequent nuclear behavior in Epichloë grass endophytes. PLoS ONE 10, e0121875 (2015).
    • (2015) PLoS ONE , vol.10 , pp. e0121875
    • Shoji, J.-Y.1    Charlton, N.D.2    Yi, M.3    Young, C.A.4    Craven, K.D.5
  • 114
    • 0242540589 scopus 로고    scopus 로고
    • Interspecific hybridization in plant-associated fungi and oomycetes: A review
    • Schardl, C. &Craven, K. Interspecific hybridization in plant-associated fungi and oomycetes: a review. Mol. Ecol. 12, 2861-2873 (2003).
    • (2003) Mol. Ecol. , vol.12 , pp. 2861-2873
    • Schardl, C.1    Craven, K.2
  • 115
    • 36549053175 scopus 로고    scopus 로고
    • A genomic view of introgression and hybrid speciation
    • Baack, E. J. &Rieseberg, L. H. A genomic view of introgression and hybrid speciation. Curr. Opin. Genet. Dev. 17, 513-518 (2007).
    • (2007) Curr. Opin. Genet. Dev. , vol.17 , pp. 513-518
    • Baack, E.J.1    Rieseberg, L.H.2
  • 116
    • 69949175105 scopus 로고    scopus 로고
    • Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi
    • Richards, T. A. et al. Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi. Plant Cell 21, 1897-1911 (2009).
    • (2009) Plant Cell , vol.21 , pp. 1897-1911
    • Richards, T.A.1
  • 117
    • 33746576136 scopus 로고    scopus 로고
    • Emergence of a new disease as a result of interspecific virulence gene transfer
    • Friesen, T. L. et al. Emergence of a new disease as a result of interspecific virulence gene transfer. Nat. Genet. 38, 953-956 (2006).
    • (2006) Nat. Genet. , vol.38 , pp. 953-956
    • Friesen, T.L.1
  • 118
    • 33847699002 scopus 로고    scopus 로고
    • The Tsn1-ToxA interaction in the wheat-Stagonospora nodorum pathosystem parallels that of the wheat-tan spot system
    • Liu, Z. et al. The Tsn1-ToxA interaction in the wheat-Stagonospora nodorum pathosystem parallels that of the wheat-tan spot system. Genome 49, 1265-1273 (2006).
    • (2006) Genome , vol.49 , pp. 1265-1273
    • Liu, Z.1
  • 119
    • 77955805592 scopus 로고    scopus 로고
    • A unique wheat disease resistance-like gene governs effector-triggered susceptibility to necrotrophic pathogens
    • Faris, J. D. et al. A unique wheat disease resistance-like gene governs effector-triggered susceptibility to necrotrophic pathogens. Proc. Natl Acad. Sci. USA 107, 13544-13549 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 13544-13549
    • Faris, J.D.1
  • 120
    • 85014946560 scopus 로고    scopus 로고
    • The discovery of the virulence gene ToxA in the wheat and barley pathogen Bipolaris sorokiniana
    • Mcdonald, M. C., Ahren, D., Simpfendorfer, S., Milgate, A. &Solomon, P. S. The discovery of the virulence gene ToxA in the wheat and barley pathogen Bipolaris sorokiniana. Mol. Plant Pathol. http://dx.doi.org/10.1111/mpp.12535 (2017).
    • (2017) Mol. Plant Pathol.
    • McDonald, M.C.1    Ahren, D.2    Simpfendorfer, S.3    Milgate, A.4    Solomon, P.S.5
  • 121
    • 84893112532 scopus 로고    scopus 로고
    • Plant expansins in bacteria and fungi: Evolution by horizontal gene transfer and independent domain fusion
    • Nikolaidis, N., Doran, N. &Cosgrove, D. J. Plant expansins in bacteria and fungi: evolution by horizontal gene transfer and independent domain fusion. Mol. Biol. Evol. 31, 376-386 (2014).
    • (2014) Mol. Biol. Evol. , vol.31 , pp. 376-386
    • Nikolaidis, N.1    Doran, N.2    Cosgrove, D.J.3
  • 122
    • 84859460610 scopus 로고    scopus 로고
    • Tomato immune receptor Ve1 recognizes effector of multiple fungal pathogens uncovered by genome and RNA sequencing
    • de Jonge, R. et al. Tomato immune receptor Ve1 recognizes effector of multiple fungal pathogens uncovered by genome and RNA sequencing. Proc. Natl Acad. Sci. USA 109, 5110-5115 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 5110-5115
    • De Jonge, R.1
  • 123
    • 84866897256 scopus 로고    scopus 로고
    • Comparative pathogenomics reveals horizontally acquired novel virulence genes in fungi infecting cereal hosts
    • Gardiner, D. M. et al. Comparative pathogenomics reveals horizontally acquired novel virulence genes in fungi infecting cereal hosts. PLoS Pathog. 8, e1002952 (2012).
    • (2012) PLoS Pathog. , vol.8 , pp. e1002952
    • Gardiner, D.M.1
  • 124
    • 84884365015 scopus 로고    scopus 로고
    • The causes and consequences of genetic heterogeneity in cancer evolution
    • Burrell, R. A., McGranahan, N., Bartek, J. &Swanton, C. The causes and consequences of genetic heterogeneity in cancer evolution. Nature 501, 338-345 (2013).
    • (2013) Nature , vol.501 , pp. 338-345
    • Burrell, R.A.1    McGranahan, N.2    Bartek, J.3    Swanton, C.4
  • 125
    • 84912101773 scopus 로고    scopus 로고
    • The architecture and evolution of cancer neochromosomes
    • Garsed, D. W. et al. The architecture and evolution of cancer neochromosomes. Cancer Cell 26, 653-667 (2014).
    • (2014) Cancer Cell , vol.26 , pp. 653-667
    • Garsed, D.W.1
  • 126
    • 0035901590 scopus 로고    scopus 로고
    • Genome evolution: Sex and the transposable element
    • Wright, S. &Finnegan, D. Genome evolution: sex and the transposable element. Curr. Biol. 11, R296-R299 (2001).
    • (2001) Curr. Biol. , vol.11 , pp. R296-R299
    • Wright, S.1    Finnegan, D.2
  • 127
    • 80052358517 scopus 로고    scopus 로고
    • RNA interference in fungi: Pathways, functions, and applications
    • Dang, Y., Yang, Q., Xue, Z. &Liu, Y. RNA interference in fungi: pathways, functions, and applications. Eukaryot. Cell 10, 1148-1155 (2011).
    • (2011) Eukaryot. Cell , vol.10 , pp. 1148-1155
    • Dang, Y.1    Yang, Q.2    Xue, Z.3    Liu, Y.4
  • 128
    • 0024361901 scopus 로고
    • Repeat-induced G-C to A-T mutations in Neurospora
    • Cambareri, E. B., Jensen, B. C., Schabtach, E. &Selker, E. U. Repeat-induced G-C to A-T mutations in Neurospora. Science 244, 1571-1575 (1989).
    • (1989) Science , vol.244 , pp. 1571-1575
    • Cambareri, E.B.1    Jensen, B.C.2    Schabtach, E.3    Selker, E.U.4
  • 129
    • 84898723553 scopus 로고    scopus 로고
    • Direct recognition of homology between double helices of DNA in Neurospora crassa
    • Gladyshev, E. &Kleckner, N. Direct recognition of homology between double helices of DNA in Neurospora crassa. Nat. Commun. 5, 3509 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 3509
    • Gladyshev, E.1    Kleckner, N.2
  • 130
    • 84863095607 scopus 로고    scopus 로고
    • Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements
    • Laurie, J. D. et al. Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements. Plant Cell 24, 1733-1745 (2012).
    • (2012) Plant Cell , vol.24 , pp. 1733-1745
    • Laurie, J.D.1
  • 131
    • 23344431640 scopus 로고    scopus 로고
    • Repeat-induced point mutation and the population structure of transposable elements in Microbotryum violaceum
    • Hood, M. E., Katawczik, M. &Giraud, T. Repeat-induced point mutation and the population structure of transposable elements in Microbotryum violaceum. Genetics 170, 1081-1089 (2005).
    • (2005) Genetics , vol.170 , pp. 1081-1089
    • Hood, M.E.1    Katawczik, M.2    Giraud, T.3
  • 132
    • 0038330375 scopus 로고    scopus 로고
    • Analysis of loss of pathogenicity mutants reveals that repeat-induced point mutations can occur in the Dothideomycete Leptosphaeria maculans
    • Idnurm, A. &Howlett, B. J. Analysis of loss of pathogenicity mutants reveals that repeat-induced point mutations can occur in the Dothideomycete Leptosphaeria maculans. Fungal Genet. Biol. 39, 31-37 (2003).
    • (2003) Fungal Genet. Biol. , vol.39 , pp. 31-37
    • Idnurm, A.1    Howlett, B.J.2
  • 133
    • 77952355762 scopus 로고    scopus 로고
    • Genome-wide evolutionary analysis of eukaryotic DNA methylation
    • Zemach, A., McDaniel, I. E., Silva, P. &Zilberman, D. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328, 916-919 (2010).
    • (2010) Science , vol.328 , pp. 916-919
    • Zemach, A.1    McDaniel, I.E.2    Silva, P.3    Zilberman, D.4
  • 134
    • 4143050271 scopus 로고    scopus 로고
    • RIP: The evolutionary cost of genome defense
    • Galagan, J. E. &Selker, E. U. RIP: The evolutionary cost of genome defense. Trends Genet. 20, 417-423 (2004).
    • (2004) Trends Genet. , vol.20 , pp. 417-423
    • Galagan, J.E.1    Selker, E.U.2
  • 135
    • 84994078737 scopus 로고    scopus 로고
    • Knock-down of the methyltransferase Kmt6 relieves H3K27me3 and results in induction of cryptic and otherwise silent secondary metabolite gene clusters in Fusarium fujikuroi
    • Studt, L. et al. Knock-down of the methyltransferase Kmt6 relieves H3K27me3 and results in induction of cryptic and otherwise silent secondary metabolite gene clusters in Fusarium fujikuroi. Environ. Microbiol. 18, 4037-4054 (2016).
    • (2016) Environ. Microbiol. , vol.18 , pp. 4037-4054
    • Studt, L.1
  • 136
    • 84887305892 scopus 로고    scopus 로고
    • The Fusarium graminearum histone H3 K27 methyltransferase KMT6 regulates development and expression of secondary metabolite gene clusters
    • Connolly, L. R., Smith, K. M. &Freitag, M. The Fusarium graminearum histone H3 K27 methyltransferase KMT6 regulates development and expression of secondary metabolite gene clusters. PLoS Genet. 9, e1003916 (2013).
    • (2013) PLoS Genet. , vol.9 , pp. e1003916
    • Connolly, L.R.1    Smith, K.M.2    Freitag, M.3
  • 137
    • 33845873289 scopus 로고    scopus 로고
    • Interactive tree of life (iTOL): An online tool for phylogenetic tree display and annotation
    • Letunic, I. &Bork, P. Interactive tree of life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23, 127-128 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 127-128
    • Letunic, I.1    Bork, P.2
  • 138
    • 84937570578 scopus 로고    scopus 로고
    • RNA-seq based gene annotation and comparative genomics of four fungal grass pathogens in the genus Zymoseptoria identify novel orphan genes and species-specific invasions of transposable elements
    • Grandaubert, J., Bhattacharyya, A. &Stukenbrock, E. H. RNA-seq based gene annotation and comparative genomics of four fungal grass pathogens in the genus Zymoseptoria identify novel orphan genes and species-specific invasions of transposable elements. G3 (Bethesda) 5, 1323-1333 (2015).
    • (2015) G3 (Bethesda) , vol.5 , pp. 1323-1333
    • Grandaubert, J.1    Bhattacharyya, A.2    Stukenbrock, E.H.3
  • 139
    • 84988311545 scopus 로고    scopus 로고
    • Living apart together: Crosstalk between the core and supernumerary genomes in a fungal plant pathogen
    • Vanheule, A. et al. Living apart together: crosstalk between the core and supernumerary genomes in a fungal plant pathogen. BMC Genomics 17, 670 (2016).
    • (2016) BMC Genomics , vol.17 , pp. 670
    • Vanheule, A.1
  • 140
    • 78650122420 scopus 로고    scopus 로고
    • Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism
    • Spanu, P. D. et al. Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science 330, 1543-1546 (2010).
    • (2010) Science , vol.330 , pp. 1543-1546
    • Spanu, P.D.1
  • 141
    • 84883463113 scopus 로고    scopus 로고
    • The wheat powdery mildew genome shows the unique evolution of an obligate biotroph
    • Wicker, T. et al. The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nat. Genet. 45, 1092-1096 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 1092-1096
    • Wicker, T.1
  • 142
    • 84878969764 scopus 로고    scopus 로고
    • Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts
    • Hacquard, S. et al. Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts. Proc. Natl Acad. Sci. USA 110, E2219-E2228 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. E2219-E2228
    • Hacquard, S.1
  • 143
    • 20244366844 scopus 로고    scopus 로고
    • The genome sequence of the rice blast fungus Magnaporthe grisea
    • Dean, R. A. et al. The genome sequence of the rice blast fungus Magnaporthe grisea. Nature 434, 980-986 (2005).
    • (2005) Nature , vol.434 , pp. 980-986
    • Dean, R.A.1
  • 144
    • 84875759967 scopus 로고    scopus 로고
    • Sequencing of the Dutch elm disease fungus genome using the Roche/454 GS-FLX Titanium System in a comparison of multiple genomics core facilities
    • Forgetta, V. et al. Sequencing of the Dutch elm disease fungus genome using the Roche/454 GS-FLX Titanium System in a comparison of multiple genomics core facilities. J. Biomol. Tech. 24, 39-49 (2013).
    • (2013) J. Biomol. Tech. , vol.24 , pp. 39-49
    • Forgetta, V.1
  • 145
    • 34548669353 scopus 로고    scopus 로고
    • The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization
    • Cuomo, C. A. et al. The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science 317, 1400-1402 (2007).
    • (2007) Science , vol.317 , pp. 1400-1402
    • Cuomo, C.A.1


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