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Volumn 32, Issue 4, 2015, Pages 928-943

Degeneration of the nonrecombining regions in the mating-type chromosomes of the anther-smut fungi

(16)  Fontanillas, Eric a,b   Hood, Michael E c   Badouin, Helene a,b   Petit, Elsa a,b,c   Barbe, Valerie d   Gouzy, Jerome e   De Vienne, Damien M f,g,h,i   Aguileta, Gabriela h,i   Poulain, Julie j   Wincker, Patrick d,j   Chen, Zehua k   Toh, Su San l   Cuomo, Christina A k   Perlin, Michael H l   Gladieux, Pierre a,b   Giraud, Tatiana a,b  

b CNRS   (France)
d DIF   (France)

Author keywords

allosomes; autosomes; evolutionary strata; genetic map; Microbotryum violaceum; PAR; Silene latifolia; Y chromosome

Indexed keywords

ANTHER SMUT FUNGUS; ARTICLE; CHROMOSOME; CHROMOSOME ISOLATION; DNA SEQUENCE; ELECTROPHORESIS; FUNGAL GENOME; FUNGAL MATING TYPE GENE; FUNGUS; GENE EXPRESSION; GENE LOSS; GENE SEQUENCE; HAPLOIDY; MICROBOTRYUM; NONHUMAN; SEX CHROMOSOME; TRANSPOSON; BASIDIOMYCETES; GENE DELETION; GENETIC RECOMBINATION; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY;

EID: 84924992957     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msu396     Document Type: Article
Times cited : (46)

References (82)
  • 1
    • 77954709472 scopus 로고    scopus 로고
    • Dynamic linkage relationships to the matingtype locus in automictic fungi of the genus Microbotryum
    • Abbate JL, HoodME.(2010).Dynamic linkage relationships to the matingtype locus in automictic fungi of the genus Microbotryum.J Evol Biol.23:1800-1805
    • (2010) J Evol Biol , vol.23 , pp. 1800-1805
    • Abbate, J.L.1    Hood, M.E.2
  • 2
    • 2342511542 scopus 로고    scopus 로고
    • Intratetrad mating and the evolution of linkage relationships
    • Antonovics J, Abrams J.(2004).Intratetrad mating and the evolution of linkage relationships.Evolution 58:702-709
    • (2004) Evolution , vol.58 , pp. 702-709
    • Antonovics, J.1    Abrams, J.2
  • 3
    • 0037329518 scopus 로고    scopus 로고
    • Accumulation of Spock and Worf, two novel non-LTR retrotransposons, on the neo-Y chromosome of Drosophila miranda
    • Bachtrog D.(2003).Accumulation of Spock and Worf, two novel non-LTR retrotransposons, on the neo-Y chromosome of Drosophila miranda.Mol Biol Evol.20:173-181
    • (2003) Mol Biol Evol , vol.20 , pp. 173-181
    • Bachtrog, D.1
  • 4
    • 25844504316 scopus 로고    scopus 로고
    • Sex chromosome evolution: Molecular aspects of y chromosome degeneration in Drosophila
    • Bachtrog D.(2005).Sex chromosome evolution: molecular aspects of Y chromosome degeneration in Drosophila.Genome Res.15: 1393-1401
    • (2005) Genome Res , vol.15 , pp. 1393-1401
    • Bachtrog, D.1
  • 5
    • 84872503128 scopus 로고    scopus 로고
    • Y-chromosome evolution: Emerging insights into processes of Y-chromosome degeneration
    • Bachtrog D.(2013).Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration.Nat Rev Genet.14:113-124
    • (2013) Nat Rev Genet , vol.14 , pp. 113-124
    • Bachtrog, D.1
  • 7
    • 33845753947 scopus 로고    scopus 로고
    • Evolution of amino-Acid sequences and codon usage on the Drosophila miranda neo-sex chromosomes
    • Bartolome C, Charlesworth B.(2006).Evolution of amino-Acid sequences and codon usage on the Drosophila miranda neo-sex chromosomes.Genetics 174:2033-2044
    • (2006) Genetics , vol.174 , pp. 2033-2044
    • Bartolome, C.1    Charlesworth, B.2
  • 8
    • 58749097041 scopus 로고    scopus 로고
    • The evolution of restricted recombination in sex chromosomes
    • Bergero R, Charlesworth D.(2009).The evolution of restricted recombination in sex chromosomes.Trends Ecol Evol.24:94-102
    • (2009) Trends Ecol Evol , vol.24 , pp. 94-102
    • Bergero, R.1    Charlesworth, D.2
  • 9
    • 34248998839 scopus 로고    scopus 로고
    • Evolutionary strata on the X chromosomes of the dioecious plant Silene latifolia: Evidence from new sex-linked genes
    • Bergero R, Forrest A, Kamau E, Charlesworth D.(2007).Evolutionary strata on the X chromosomes of the dioecious plant Silene latifolia: evidence from new sex-linked genes.Genetics 175:1945-1954
    • (2007) Genetics , vol.175 , pp. 1945-1954
    • Bergero, R.1    Forrest, A.2    Kamau, E.3    Charlesworth, D.4
  • 10
    • 79954554191 scopus 로고    scopus 로고
    • Having sex, yes, but with whom?.Inferences from fungi on the evolution of anisogamy and mating types
    • Billiard S, Lopez-Villavicencio M, Devier B, HoodM, Fairhead C, Giraud T.(2011).Having sex, yes, but with whom?.Inferences from fungi on the evolution of anisogamy and mating types.Biol Rev.86:421-442
    • (2011) Biol Rev , vol.86 , pp. 421-442
    • Billiard, S.1    Lopez-Villavicencio, M.2    Devier, B.3    Hoodm Fairhead, C.4    Giraud, T.5
  • 11
    • 0008556126 scopus 로고
    • Sex chromosomes in haploid dioecy-unique contrast to Mullers theory for diploid dioecy
    • Bull JJ.(1978).Sex chromosomes in haploid dioecy-unique contrast to Mullers theory for diploid dioecy.Am Nat.112:245-250
    • (1978) Am Nat , vol.112 , pp. 245-250
    • Bull, J.J.1
  • 12
    • 67650757433 scopus 로고    scopus 로고
    • TrimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses
    • Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T.(2009).trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.Bioinformatics 25:1972-1973
    • (2009) Bioinformatics , vol.25 , pp. 1972-1973
    • Capella-Gutierrez, S.1    Silla-Martinez, J.M.2    Gabaldon, T.3
  • 13
    • 0025906872 scopus 로고
    • The evolution of sex chromosomes
    • Charlesworth B.(1991).The evolution of sex chromosomes.Science 251: 1030-1033
    • (1991) Science , vol.251 , pp. 1030-1033
    • Charlesworth, B.1
  • 14
    • 23644455954 scopus 로고    scopus 로고
    • Steps in the evolution of heteromorphic sex chromosomes
    • Charlesworth D, Charlesworth B, Marais G.(2005).Steps in the evolution of heteromorphic sex chromosomes.Heredity 95:118-128
    • (2005) Heredity , vol.95 , pp. 118-128
    • Charlesworth, D.1    Charlesworth, B.2    Marais, G.3
  • 15
    • 84864453108 scopus 로고    scopus 로고
    • JModelTest 2: More models, new heuristics and parallel computing
    • Darriba D, Taboada G, Doallo R, Posada D.(2012).jModelTest 2: more models, new heuristics and parallel computing.Nat Methods.9:772
    • (2012) Nat Methods , vol.9 , pp. 772
    • Darriba, D.1    Taboada, G.2    Doallo, R.3    Posada, D.4
  • 16
    • 0002624763 scopus 로고
    • Mating type and morphognesis in Ustilago violacea
    • Day DW.(1979).Mating type and morphognesis in Ustilago violacea.Bot Gaz.140:94-101
    • (1979) Bot Gaz , vol.140 , pp. 94-101
    • Day, D.W.1
  • 17
    • 72449147211 scopus 로고    scopus 로고
    • Phylogenetic determinants of potential host shifts in fungal pathogens
    • de Vienne D, Hood M, Giraud T.(2009).Phylogenetic determinants of potential host shifts in fungal pathogens.J Evol Biol.22:2532-2541
    • (2009) J Evol Biol , vol.22 , pp. 2532-2541
    • De Vienne, D.1    Hood, M.2    Giraud, T.3
  • 19
    • 61549121055 scopus 로고    scopus 로고
    • Ancient trans-specific polymorphism at pheromone receptor genes in basidiomycetes
    • Devier B, Aguileta G, Hood M, Giraud T.(2009).Ancient trans-specific polymorphism at pheromone receptor genes in basidiomycetes.Genetics 181:209-223
    • (2009) Genetics , vol.181 , pp. 209-223
    • Devier, B.1    Aguileta, G.2    Hood, M.3    Giraud, T.4
  • 22
    • 0034020465 scopus 로고    scopus 로고
    • Sex chromosomal transposable element accumulation and male-driven substitutional evolution in humans
    • Erlandsson R, Wilson JF, Paabo S.(2000).Sex chromosomal transposable element accumulation and male-driven substitutional evolution in humans.Mol Biol Evol.17:804-812
    • (2000) Mol Biol Evol , vol.17 , pp. 804-812
    • Erlandsson, R.1    Wilson, J.F.2    Paabo, S.3
  • 24
    • 0036274194 scopus 로고    scopus 로고
    • Substitution rates in the X-And Y-linked genes of the plants, Silene latifolia and S dioica
    • Filatov DA, Charlesworth D.(2002).Substitution rates in the X-And Y-linked genes of the plants, Silene latifolia and S.dioica.Mol Biol Evol.19:898-907
    • (2002) Mol Biol Evol , vol.19 , pp. 898-907
    • Filatov, D.A.1    Charlesworth, D.2
  • 25
    • 77957233773 scopus 로고    scopus 로고
    • The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection
    • Fletcher W, Yang Z.(2010).The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection.Mol Biol Evol.27:2257-2267
    • (2010) Mol Biol Evol , vol.27 , pp. 2257-2267
    • Fletcher, W.1    Yang, Z.2
  • 27
    • 0028247844 scopus 로고
    • Genetics of Ustilago violacea XXXII Genetic evidence for transposable elements
    • Garber ED, RuddatM.(1995).Genetics of Ustilago violacea.XXXII.Genetic evidence for transposable elements.Theor Appl Genet.89:838-846
    • (1995) Theor Appl Genet , vol.89 , pp. 838-846
    • Garber, E.D.1    Ruddat, M.2
  • 28
    • 0032427551 scopus 로고    scopus 로고
    • Genetics of Ustilago violacea.XXXIV.Genetic evidence for a transposable element functioning during mitosis and txo transposable elements functioning during meiosis
    • Garber ED, Ruddat M.(1998).Genetics of Ustilago violacea.XXXIV.Genetic evidence for a transposable element functioning during mitosis and txo transposable elements functioning during meiosis.Int J Plant Sci.159:1018-1022
    • (1998) Int J Plant Sci , vol.159 , pp. 1018-1022
    • Garber, E.D.1    Ruddat, M.2
  • 29
    • 47049093932 scopus 로고    scopus 로고
    • The mating system of the anther smut fungus, Microbotryum violaceum: Selfing under heterothallism
    • Giraud T, Yockteng R, Lopez-Villavicencio M, Refregier G, Hood ME.(2008).The mating system of the anther smut fungus, Microbotryum violaceum: selfing under heterothallism.Eukaryot Cell.7:765-775
    • (2008) Eukaryot Cell , vol.7 , pp. 765-775
    • Giraud, T.1    Yockteng, R.2    Lopez-Villavicencio, M.3    Refregier, G.4    Hood, M.E.5
  • 30
    • 78650492295 scopus 로고    scopus 로고
    • Maintenance of fungal pathogen species that are specialized to different hosts: Allopatric divergence and introgression through secondary contact
    • Gladieux P, Vercken E, Fontaine M, Hood M, Jonot O, Couloux A, Giraud T.(2011).Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact.Mol Biol Evol.28:459-471
    • (2011) Mol Biol Evol , vol.28 , pp. 459-471
    • Gladieux, P.1    Vercken, E.2    Fontaine, M.3    Hood, M.4    Jonot, O.5    Couloux, A.6    Giraud, T.7
  • 33
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O.(2003).A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.Syst Biol.52: 696-704
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 34
    • 0036185923 scopus 로고    scopus 로고
    • Dimorphic mating-Type chromosomes in the anthersmut fungus
    • Hood ME.(2002).Dimorphic mating-Type chromosomes in the anthersmut fungus.Genetics 160:457-461
    • (2002) Genetics , vol.160 , pp. 457-461
    • Hood, M.E.1
  • 35
    • 21044454492 scopus 로고    scopus 로고
    • Repetitive DNA in the automictic fungus Microbotryum violaceum
    • Hood ME.(2005).Repetitive DNA in the automictic fungus Microbotryum violaceum.Genetica 124:1-10
    • (2005) Genetica , vol.124 , pp. 1-10
    • Hood, M.E.1
  • 36
    • 0033792196 scopus 로고    scopus 로고
    • Intratetrad mating, heterozygosity, and the maintenance of deleterious alleles in Microbotryum violaceum (=Ustilago violacea
    • Hood ME, Antonovics J.(2000).Intratetrad mating, heterozygosity, and the maintenance of deleterious alleles in Microbotryum violaceum (=Ustilago violacea).Heredity 85:231-241
    • (2000) Heredity , vol.85 , pp. 231-241
    • Hood, M.E.1    Antonovics, J.2
  • 37
    • 5144224453 scopus 로고    scopus 로고
    • Shared forces of sex chromosome evolution in haploids-mating and diploids-mating organisms: Microbotryum violaceum and other model organisms
    • Hood ME, Antonovics J, Koskella B.(2004).Shared forces of sex chromosome evolution in haploids-mating and diploids-mating organisms: Microbotryum violaceum and other model organisms.Genetics 168: 141-146
    • (2004) Genetics , vol.168 , pp. 141-146
    • Hood, M.E.1    Antonovics, J.2    Koskella, B.3
  • 38
    • 2442511086 scopus 로고    scopus 로고
    • Mating within the meiotic tetrad and the maintenance of genomic heterozygosity
    • Hood ME, Antonovics JA.(2004).Mating within the meiotic tetrad and the maintenance of genomic heterozygosity.Genetics 166: 1751-1759
    • (2004) Genetics , vol.166 , pp. 1751-1759
    • Hood, M.E.1    Antonovics, J.A.2
  • 39
    • 23344431640 scopus 로고    scopus 로고
    • Repeat-induced pointmutation and the population structure of transposable elements in Microbotryum violaceum
    • Hood ME, Katawezik M, Giraud T.(2005).Repeat-induced pointmutation and the population structure of transposable elements in Microbotryum violaceum.Genetics 170:1081-1089
    • (2005) Genetics , vol.170 , pp. 1081-1089
    • Hood, M.E.1    Katawezik, M.2    Giraud, T.3
  • 40
    • 84871792113 scopus 로고    scopus 로고
    • Extensive divergence between matingtype chromosomes of the anther-smut fungus
    • Hood ME, Petit E, Giraud T.(2013).Extensive divergence between matingtype chromosomes of the anther-smut fungus.Genetics 193: 309-315
    • (2013) Genetics , vol.193 , pp. 309-315
    • Hood, M.E.1    Petit, E.2    Giraud, T.3
  • 41
    • 30344455917 scopus 로고    scopus 로고
    • The evolution of intratetrad mating rates
    • Johnson LJ, Antonovics J, Hood ME.(2005).The evolution of intratetrad mating rates.Evolution 59:2525-2532
    • (2005) Evolution , vol.59 , pp. 2525-2532
    • Johnson, L.J.1    Antonovics, J.2    Hood, M.E.3
  • 44
    • 33746879970 scopus 로고    scopus 로고
    • Implications of molecular characters for the phylogeny of the Microbotryaceae (Basidiomycota: Urediniomycetes
    • Kemler M, Goker M, Oberwinkler F, Begerow D.(2006).Implications of molecular characters for the phylogeny of the Microbotryaceae (Basidiomycota : Urediniomycetes).BMC Evol Biol.6:35
    • (2006) BMC Evol Biol , vol.6 , pp. 35
    • Kemler, M.1    Goker, M.2    Oberwinkler, F.3    Begerow, D.4
  • 45
    • 0033615708 scopus 로고    scopus 로고
    • Four evolutionary strata on the human X chromosome
    • Lahn BT, Page DC.(1999).Four evolutionary strata on the human X chromosome.Science 286:964-967
    • (1999) Science , vol.286 , pp. 964-967
    • Lahn, B.T.1    Page, D.C.2
  • 46
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL.(2009).Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.Genome Biol.10:R25
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 48
    • 33947250760 scopus 로고    scopus 로고
    • Phylogenetic evidence of host-specific cryptic species in the anther smut fungus
    • Le Gac M, Hood ME, Fournier E, Giraud T.(2007).Phylogenetic evidence of host-specific cryptic species in the anther smut fungus.Evolution 61:15-26
    • (2007) Evolution , vol.61 , pp. 15-26
    • Le Gac, M.1    Hood, M.E.2    Fournier, E.3    Giraud, T.4
  • 49
    • 34347358478 scopus 로고    scopus 로고
    • Evolution of reproductive isolation within a parasitic fungal complex
    • Le Gac M, Hood ME, Giraud T.(2007).Evolution of reproductive isolation within a parasitic fungal complex.Evolution 61:1781-1787
    • (2007) Evolution , vol.61 , pp. 1781-1787
    • Le Gac, M.1    Hood, M.E.2    Giraud, T.3
  • 50
    • 79961123152 scopus 로고    scopus 로고
    • RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome
    • Li B, Dewey CN.(2011).RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.BMC Bioinformatics 12:323
    • (2011) BMC Bioinformatics , vol.12 , pp. 323
    • Li, B.1    Dewey, C.N.2
  • 52
    • 23044471766 scopus 로고    scopus 로고
    • An algorithm for progressive multiple alignment of sequences with insertions
    • Loytynoja A, Goldman N.(2005).An algorithm for progressive multiple alignment of sequences with insertions.Proc Natl Acad Sci U S A.102:10557-10562
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 10557-10562
    • Loytynoja, A.1    Goldman, N.2
  • 53
    • 46249095233 scopus 로고    scopus 로고
    • Phylogeny-Aware gap placement prevents errors in sequence alignment and evolutionary analysis
    • Loytynoja A, Goldman N.(2008).Phylogeny-Aware gap placement prevents errors in sequence alignment and evolutionary analysis.Science 320:1632-1635
    • (2008) Science , vol.320 , pp. 1632-1635
    • Loytynoja, A.1    Goldman, N.2
  • 54
    • 33746862804 scopus 로고    scopus 로고
    • Anther smuts of Caryophyllaceae: Molecular characters indicate host-dependent species delimitation
    • Lutz M, Goker M, Piatek M, Kemler M, Begerow D, Oberwinkler F.(2005).Anther smuts of Caryophyllaceae: molecular characters indicate host-dependent species delimitation.Mycol Prog.4: 225-238
    • (2005) Mycol Prog , vol.4 , pp. 225-238
    • Lutz, M.1    Goker, M.2    Piatek, M.3    Kemler, M.4    Begerow, D.5    Oberwinkler, F.6
  • 57
    • 79957957884 scopus 로고    scopus 로고
    • High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes
    • Markova-Raina P, Petrov D.(2011).High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes.Genome Res.21:863-874
    • (2011) Genome Res , vol.21 , pp. 863-874
    • Markova-Raina, P.1    Petrov, D.2
  • 58
    • 41949136199 scopus 로고    scopus 로고
    • The matingtype chromosome in the filamentous ascomycete Neurospora tetrasperma represents a model for early evolution of sex chromosomes
    • Menkis A, Jacobson DJ, Gustafsson T, Johannesson H.(2008).The matingtype chromosome in the filamentous ascomycete Neurospora tetrasperma represents a model for early evolution of sex chromosomes.PLoS Genet.4:e1000030
    • (2008) PLoS Genet , vol.4 , pp. e1000030
    • Menkis, A.1    Jacobson, D.J.2    Gustafsson, T.3    Johannesson, H.4
  • 59
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • Nielsen R, Yang Z.(1998).Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene.Genetics 148:929-936
    • (1998) Genetics , vol.148 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2
  • 61
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novelmethod for fast and accurate multiple sequence alignment
    • Notredame C, Higgins D, Heringa J.2000.T-Coffee: a novelmethod for fast and accurate multiple sequence alignment.J Mol Biol.302:205-217
    • (2000) J Mol Biol , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.2    Heringa, J.3
  • 62
    • 2642677644 scopus 로고    scopus 로고
    • The distribution of mating-Type bias in natural populations of the anther-smut Ustilago violacea on Silene alba in Virginia
    • Oudemans PV, Alexander HM, Antonovics J, Altizer S, Thrall PH, Rose L.(1998).The distribution of mating-Type bias in natural populations of the anther-smut Ustilago violacea on Silene alba in Virginia.Mycologia 90:372-381
    • (1998) Mycologia , vol.90 , pp. 372-381
    • Oudemans, P.V.1    Alexander, H.M.2    Antonovics, J.3    Altizer, S.4    Thrall, P.H.5    Rose, L.6
  • 63
    • 0001412556 scopus 로고    scopus 로고
    • Pathovars or formae speciales of Microbotryum violaceum differ in electrophoretic karyotype
    • Perlin MH.(1996).Pathovars or formae speciales of Microbotryum violaceum differ in electrophoretic karyotype.Int J Plant Sci.157:447-452
    • (1996) Int J Plant Sci , vol.157 , pp. 447-452
    • Perlin, M.H.1
  • 65
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: Phylogenetic model averaging
    • Posada D.(2008).jModelTest: phylogenetic model averaging.Mol Biol Evol.25:1253-1256
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 66
    • 33645418499 scopus 로고    scopus 로고
    • High mutation rates have driven extensive structural polymorphism among human y chromosomes
    • Repping S.(2006).High mutation rates have driven extensive structural polymorphism among human Y chromosomes.Nat Genet.38: 463-467
    • (2006) Nat Genet , vol.38 , pp. 463-467
    • Repping, S.1
  • 67
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK.(2010).edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.Bioinformatics 26:139-140
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 68
    • 84878113118 scopus 로고    scopus 로고
    • Inferring ancient divergences requires genes with strong phylogenetic signals
    • Salichos L, Rokas A.(2013).Inferring ancient divergences requires genes with strong phylogenetic signals.Nature 497:327-331
    • (2013) Nature , vol.497 , pp. 327-331
    • Salichos, L.1    Rokas, A.2
  • 69
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • Sawyer SA.(1989).Statistical tests for detecting gene conversion.Mol Biol Evol.6:526-538
    • (1989) Mol Biol Evol , vol.6 , pp. 526-538
    • Sawyer, S.A.1
  • 70
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A.(2006).RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.Bioinformatics 22:2688-2690
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 71
    • 14644397888 scopus 로고    scopus 로고
    • RAxML-III: A fast program for maximum likelihood-based inference of large phylogenetic trees
    • Stamatakis A, Ludwig T, Meier H.(2005).RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees.Bioinformatics 21:456-463
    • (2005) Bioinformatics , vol.21 , pp. 456-463
    • Stamatakis, A.1    Ludwig, T.2    Meier, H.3
  • 72
    • 0026736836 scopus 로고
    • Degenerating y chromosome of Drosophila miranda: A trap for retrotransposons
    • Steinemann M, Steinemann S.(1992).Degenerating Y chromosome of Drosophila miranda: a trap for retrotransposons.Proc Natl Acad Sci U S A.89:7591-7595
    • (1992) Proc Natl Acad Sci U S A , vol.89 , pp. 7591-7595
    • Steinemann, M.1    Steinemann, S.2
  • 73
    • 0041976130 scopus 로고    scopus 로고
    • Mating-Type ratio bias in populations of the phytopathogenic fungus Microbotryum violaceum from several host species
    • Thomas A, Shykoff J, Jonot O, Giraud T.(2003).Mating-Type ratio bias in populations of the phytopathogenic fungus Microbotryum violaceum from several host species.Int J Plant Sci.164:641-647
    • (2003) Int J Plant Sci , vol.164 , pp. 641-647
    • Thomas, A.1    Shykoff, J.2    Jonot, O.3    Giraud, T.4
  • 74
    • 70350168802 scopus 로고    scopus 로고
    • Evolutionary Strata' in a small mating type-specific region of the smut fungus Microbotryum violaceum
    • Votintseva AA, Filatov DA. (2009).'Evolutionary Strata' in A Small Mating Type-specific Region of the Smut Fungus Microbotryum Violaceum.Genetics 182:1391-1396
    • (2009) Genetics , vol.182 , pp. 1391-1396
    • Votintseva, A.A.1    Filatov, D.A.2
  • 75
    • 80053053491 scopus 로고    scopus 로고
    • Evidence of the accumulation of allele-specific non-synonymous substitutions in the young region of recombination suppression within the mating-Type chromosomes of Neurospora tetrasperma
    • Whittle CA, Johannesson H.(2011).Evidence of the accumulation of allele-specific non-synonymous substitutions in the young region of recombination suppression within the mating-Type chromosomes of Neurospora tetrasperma.Heredity 107:305-314
    • (2011) Heredity , vol.107 , pp. 305-314
    • Whittle, C.A.1    Johannesson, H.2
  • 76
    • 79955445401 scopus 로고    scopus 로고
    • Degeneration in codon usage within the region of suppressed recombination in the matingtype chromosomes of Neurospora tetrasperma
    • Whittle CA, Sun Y, Johannesson H.(2011).Degeneration in codon usage within the region of suppressed recombination in the matingtype chromosomes of Neurospora tetrasperma.Eukaryot Cell.10: 594-603
    • (2011) Eukaryot Cell , vol.10 , pp. 594-603
    • Whittle, C.A.1    Sun, Y.2    Johannesson, H.3
  • 77
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang Z.(2007).PAML 4: phylogenetic analysis by maximum likelihood.Mol Biol Evol.24:1586-1591
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 78
    • 0036270185 scopus 로고    scopus 로고
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
    • Yang Z, Nielsen R.(2002).Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages.Mol Biol Evol.19:908-917
    • (2002) Mol Biol Evol , vol.19 , pp. 908-917
    • Yang, Z.1    Nielsen, R.2
  • 79
    • 16344378246 scopus 로고    scopus 로고
    • Bayes Empirical Bayes inference of amino acid sites under positive selection
    • Yang Z, Wong WSW, Nielsen R.(2005).Bayes Empirical Bayes inference of amino acid sites under positive selection.Mol Biol Evol.22: 1107-1118
    • (2005) Mol Biol Evol , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.W.2    Nielsen, R.3
  • 81
    • 0022814953 scopus 로고
    • Some principles of the gene localization in eukaryotic chromosomes Formation of the problem and analysis of nonrandom localization of the mating-Type loci in some fungi
    • Zakharov IA.(1986).Some principles of the gene localization in eukaryotic chromosomes.Formation of the problem and analysis of nonrandom localization of the mating-Type loci in some fungi.Genetika 22: 2620-2624
    • (1986) Genetika , vol.22 , pp. 2620-2624
    • Zakharov, I.A.1
  • 82
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • Zhang J, Nielsen R, Yang Z.(2005).Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level.Mol Biol Evol.22:2472-2479
    • (2005) Mol Biol Evol , vol.22 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3


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