-
1
-
-
0016363861
-
Accessory chromosomes
-
1:STN:280:DyaE2M%2FntFKmtw%3D%3D 4613258
-
Muntzing A. Accessory chromosomes. Annu Rev Genet. 1974;8:243-66.
-
(1974)
Annu Rev Genet
, vol.8
, pp. 243-266
-
-
Muntzing, A.1
-
2
-
-
33750026996
-
-
Belknap Press of Harvard University Cambridge
-
Burt A, Trivers R. Genes in conflict. Cambridge: Belknap Press of Harvard University; 2006.
-
(2006)
Genes in Conflict
-
-
Burt, A.1
Trivers, R.2
-
3
-
-
0026348015
-
A fungal gene for antibiotic resistance on a dispensable ("B") chromosome
-
1:CAS:528:DyaK38XhtVSntbw%3D 1763326
-
Miao VP, Covert SF, VanEtten HD. A fungal gene for antibiotic resistance on a dispensable ("B") chromosome. Science. 1991;254(5039):1773-6.
-
(1991)
Science
, vol.254
, Issue.5039
, pp. 1773-1776
-
-
Miao, V.P.1
Covert, S.F.2
VanEtten, H.D.3
-
4
-
-
0031831222
-
Supernumerary chromosomes in filamentous fungi
-
1:CAS:528:DyaK1cXjsVenu7c%3D 9618581
-
Covert SF. Supernumerary chromosomes in filamentous fungi. Curr Genet. 1998;33(5):311-9.
-
(1998)
Curr Genet
, vol.33
, Issue.5
, pp. 311-319
-
-
Covert, S.F.1
-
5
-
-
70149110707
-
The genome of Nectria haematococca: Contribution of supernumerary chromosomes to gene expansion
-
2725324 19714214
-
Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, Schmutz J, Taga M, White GJ, Zhou S, et al. The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion. PLoS Genet. 2009;5(8):e1000618.
-
(2009)
PLoS Genet
, vol.5
, Issue.8
, pp. e1000618
-
-
Coleman, J.J.1
Rounsley, S.D.2
Rodriguez-Carres, M.3
Kuo, A.4
Wasmann, C.C.5
Grimwood, J.6
Schmutz, J.7
Taga, M.8
White, G.J.9
Zhou, S.10
-
6
-
-
77949714038
-
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
-
3048781 1:CAS:528:DC%2BC3cXjsFWjs7g%3D 20237561
-
Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, Freitag M, Grabherr M, Henrissat B, et al. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature. 2010;464(7287):367-73.
-
(2010)
Nature
, vol.464
, Issue.7287
, pp. 367-373
-
-
Ma, L.J.1
Van Der Does, H.C.2
Borkovich, K.A.3
Coleman, J.J.4
Daboussi, M.J.5
Di Pietro, A.6
Dufresne, M.7
Freitag, M.8
Grabherr, M.9
Henrissat, B.10
-
7
-
-
84900826142
-
Variability of chromosome structure in pathogenic fungi-of 'ends and odds'
-
1:CAS:528:DC%2BC2cXhtlakurvK 24835423
-
Galazka JM, Freitag M. Variability of chromosome structure in pathogenic fungi-of 'ends and odds'. Curr Opin Microbiol. 2014;20:19-26.
-
(2014)
Curr Opin Microbiol
, vol.20
, pp. 19-26
-
-
Galazka, J.M.1
Freitag, M.2
-
8
-
-
84875420788
-
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
-
3105345 21326234
-
Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, Dominguez V, Anthouard V, Bally P, Bourras S, et al. Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations. Nat Commun. 2011;2:202.
-
(2011)
Nat Commun
, vol.2
, pp. 202
-
-
Rouxel, T.1
Grandaubert, J.2
Hane, J.K.3
Hoede, C.4
Van De Wouw, A.P.5
Couloux, A.6
Dominguez, V.7
Anthouard, V.8
Bally, P.9
Bourras, S.10
-
9
-
-
84876418795
-
The dispensable chromosome of Leptosphaeria maculans shelters an effector gene conferring avirulence towards Brassica rapa
-
1:CAS:528:DC%2BC3sXlvVyrs7g%3D 23406519
-
Balesdent MH, Fudal I, Ollivier B, Bally P, Grandaubert J, Eber F, Chevre AM, Leflon M, Rouxel T. The dispensable chromosome of Leptosphaeria maculans shelters an effector gene conferring avirulence towards Brassica rapa. New Phytol. 2013;198(3):887-98.
-
(2013)
New Phytol
, vol.198
, Issue.3
, pp. 887-898
-
-
Balesdent, M.H.1
Fudal, I.2
Ollivier, B.3
Bally, P.4
Grandaubert, J.5
Eber, F.6
Chevre, A.M.7
Leflon, M.8
Rouxel, T.9
-
10
-
-
84916918755
-
Genes on B chromosomes: Old questions revisited with new tools
-
1:CAS:528:DC%2BC2cXitV2ntbvK 25481283
-
Banaei-Moghaddam AM, Martis MM, Macas J, Gundlach H, Himmelbach A, Altschmied L, Mayer KF, Houben A. Genes on B chromosomes: old questions revisited with new tools. Biochim Biophys Acta. 2015;1849(1):64-70.
-
(2015)
Biochim Biophys Acta
, vol.1849
, Issue.1
, pp. 64-70
-
-
Banaei-Moghaddam, A.M.1
Martis, M.M.2
Macas, J.3
Gundlach, H.4
Himmelbach, A.5
Altschmied, L.6
Mayer, K.F.7
Houben, A.8
-
11
-
-
79959834134
-
Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis
-
3111534 1:CAS:528:DC%2BC3MXnslCnsLk%3D 21695235
-
Goodwin SB, M'Barek SB, Dhillon B, Wittenberg AH, Crane CF, Hane JK, Foster AJ, Van der Lee TA, Grimwood J, Aerts A, et al. Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis. PLoS Genet. 2011;7(6):e1002070.
-
(2011)
PLoS Genet
, vol.7
, Issue.6
, pp. e1002070
-
-
Goodwin, S.B.1
M'Barek, S.B.2
Dhillon, B.3
Wittenberg, A.H.4
Crane, C.F.5
Hane, J.K.6
Foster, A.J.7
Van Der Lee, T.A.8
Grimwood, J.9
Aerts, A.10
-
12
-
-
84937570578
-
RNA-seq based gene annotation and comparative genomics of four fungal grass pathogens in the genus Zymoseptoria identify novel orphan genes and species-specific invasions of transposable elements
-
Grandaubert J, Bhattacharyya A, Stukenbrock EH. RNA-seq based gene annotation and comparative genomics of four fungal grass pathogens in the genus Zymoseptoria identify novel orphan genes and species-specific invasions of transposable elements. G3 (Bethesda). 2015;5(7):1323-33.
-
(2015)
G3 (Bethesda)
, vol.5
, Issue.7
, pp. 1322-1333
-
-
Grandaubert, J.1
Bhattacharyya, A.2
Stukenbrock, E.H.3
-
13
-
-
84896712807
-
Transcriptional reprogramming of wheat and the hemibiotrophic pathogen Septoria tritici during two phases of the compatible interaction
-
3841193 24303057
-
Yang F, Li W, Jorgensen HJ. Transcriptional reprogramming of wheat and the hemibiotrophic pathogen Septoria tritici during two phases of the compatible interaction. PLoS One. 2013;8(11):e81606.
-
(2013)
PLoS One
, vol.8
, Issue.11
, pp. e81606
-
-
Yang, F.1
Li, W.2
Jorgensen, H.J.3
-
14
-
-
84923643695
-
Expression profiling of the wheat pathogen Zymoseptoria tritici reveals genomic patterns of transcription and host-specific regulatory programs
-
4079195 24920004
-
Kellner R, Bhattacharyya A, Poppe S, Hsu TY, Brem RB, Stukenbrock EH. Expression profiling of the wheat pathogen Zymoseptoria tritici reveals genomic patterns of transcription and host-specific regulatory programs. Genome Biol Evol. 2014;6(6):1353-65.
-
(2014)
Genome Biol Evol
, vol.6
, Issue.6
, pp. 1353-1365
-
-
Kellner, R.1
Bhattacharyya, A.2
Poppe, S.3
Hsu, T.Y.4
Brem, R.B.5
Stukenbrock, E.H.6
-
15
-
-
84861196424
-
The accessory genome as a cradle for adaptive evolution in pathogens
-
3343108 1:CAS:528:DC%2BC38XntlWnsLw%3D 22570606
-
Croll D, McDonald BA. The accessory genome as a cradle for adaptive evolution in pathogens. PLoS Pathog. 2012;8(4):e1002608.
-
(2012)
PLoS Pathog
, vol.8
, Issue.4
, pp. e1002608
-
-
Croll, D.1
McDonald, B.A.2
-
16
-
-
78650695340
-
Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola
-
3009667 1:CAS:528:DC%2BC3MXjtlWnsw%3D%3D 21203495
-
Stukenbrock EH, Jorgensen FG, Zala M, Hansen TT, McDonald BA, Schierup MH. Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola. PLoS Genet. 2010;6(12):e1001189.
-
(2010)
PLoS Genet
, vol.6
, Issue.12
, pp. e1001189
-
-
Stukenbrock, E.H.1
Jorgensen, F.G.2
Zala, M.3
Hansen, T.T.4
McDonald, B.A.5
Schierup, M.H.6
-
17
-
-
84879670944
-
Breakage-fusion-bridge cycles and large insertions contribute to the rapid evolution of accessory chromosomes in a fungal pathogen
-
3681731 1:CAS:528:DC%2BC3sXhtFersLnL 23785303
-
Croll D, Zala M, McDonald BA. Breakage-fusion-bridge cycles and large insertions contribute to the rapid evolution of accessory chromosomes in a fungal pathogen. PLoS Genet. 2013;9(6):e1003567.
-
(2013)
PLoS Genet
, vol.9
, Issue.6
, pp. e1003567
-
-
Croll, D.1
Zala, M.2
McDonald, B.A.3
-
18
-
-
82955200227
-
The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species
-
3227104 1:CAS:528:DC%2BC3MXhs1WlurzJ 21994252
-
Stukenbrock EH, Bataillon T, Dutheil JY, Hansen TT, Li R, Zala M, McDonald BA, Wang J, Schierup MH. The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species. Genome Res. 2011;21(12):2157-66.
-
(2011)
Genome Res
, vol.21
, Issue.12
, pp. 2157-2166
-
-
Stukenbrock, E.H.1
Bataillon, T.2
Dutheil, J.Y.3
Hansen, T.T.4
Li, R.5
Zala, M.6
McDonald, B.A.7
Wang, J.8
Schierup, M.H.9
-
19
-
-
67649200210
-
Meiosis drives extraordinary genome plasticity in the haploid fungal plant pathogen Mycosphaerella graminicola
-
2689623 19516898
-
Wittenberg AH, van der Lee TA, Ben M'barek S, Ware SB, Goodwin SB, Kilian A, Visser RG, Kema GH, Schouten HJ. Meiosis drives extraordinary genome plasticity in the haploid fungal plant pathogen Mycosphaerella graminicola. PLoS One. 2009;4(6):e5863.
-
(2009)
PLoS One
, vol.4
, Issue.6
, pp. e5863
-
-
Wittenberg, A.H.1
Van Der Lee, T.A.2
Ben M'Barek, S.3
Ware, S.B.4
Goodwin, S.B.5
Kilian, A.6
Visser, R.G.7
Kema, G.H.8
Schouten, H.J.9
-
20
-
-
0030271719
-
The roles of telomeres and telomerase in cell life span
-
8921986
-
Counter CM. The roles of telomeres and telomerase in cell life span. Mutat Res. 1996;366(1):45-63.
-
(1996)
Mutat Res
, vol.366
, Issue.1
, pp. 45-63
-
-
Counter, C.M.1
-
21
-
-
84864883022
-
Centromeres of filamentous fungi
-
3409310 1:CAS:528:DC%2BC38XhtFWntrzF 22752455
-
Smith KM, Galazka JM, Phatale PA, Connolly LR, Freitag M. Centromeres of filamentous fungi. Chromosome Res. 2012;20(5):635-56.
-
(2012)
Chromosome Res
, vol.20
, Issue.5
, pp. 635-656
-
-
Smith, K.M.1
Galazka, J.M.2
Phatale, P.A.3
Connolly, L.R.4
Freitag, M.5
-
22
-
-
80055121651
-
Diversity in requirement of genetic and epigenetic factors for centromere function in fungi
-
3209047 1:CAS:528:DC%2BC3MXhsV2qtLjF 21908596
-
Roy B, Sanyal K. Diversity in requirement of genetic and epigenetic factors for centromere function in fungi. Eukaryot Cell. 2011;10(11):1384-95.
-
(2011)
Eukaryot Cell
, vol.10
, Issue.11
, pp. 1384-1395
-
-
Roy, B.1
Sanyal, K.2
-
23
-
-
84880573233
-
Esperanto for histones: CENP-A, not CenH3, is the centromeric histone H3 variant
-
3627038 1:CAS:528:DC%2BC3sXlvV2msbY%3D 23580138
-
Earnshaw WC, Allshire RC, Black BE, Bloom K, Brinkley BR, Brown W, Cheeseman IM, Choo KH, Copenhaver GP, Deluca JG, et al. Esperanto for histones: CENP-A, not CenH3, is the centromeric histone H3 variant. Chromosome Res. 2013;21(2):101-6.
-
(2013)
Chromosome Res
, vol.21
, Issue.2
, pp. 101-106
-
-
Earnshaw, W.C.1
Allshire, R.C.2
Black, B.E.3
Bloom, K.4
Brinkley, B.R.5
Brown, W.6
Cheeseman, I.M.7
Choo, K.H.8
Copenhaver, G.P.9
Deluca, J.G.10
-
24
-
-
0023275058
-
A 17-kD centromere protein (CENP-A) copurifies with nucleosome core particles and with histones
-
1:CAS:528:DyaL2sXktlGgsr4%3D 3558482
-
Palmer DK, O'Day K, Wener MH, Andrews BS, Margolis RL. A 17-kD centromere protein (CENP-A) copurifies with nucleosome core particles and with histones. J Cell Biol. 1987;104(4):805-15.
-
(1987)
J Cell Biol
, vol.104
, Issue.4
, pp. 805-815
-
-
Palmer, D.K.1
O'Day, K.2
Wener, M.H.3
Andrews, B.S.4
Margolis, R.L.5
-
25
-
-
0021989578
-
Identification of a family of human centromere proteins using autoimmune sera from patients with scleroderma
-
1:CAS:528:DyaL2MXhsVOgsb0%3D 2579778
-
Earnshaw WC, Rothfield N. Identification of a family of human centromere proteins using autoimmune sera from patients with scleroderma. Chromosoma. 1985;91(3-4):313-21.
-
(1985)
Chromosoma
, vol.91
, Issue.3-4
, pp. 313-321
-
-
Earnshaw, W.C.1
Rothfield, N.2
-
26
-
-
0037459109
-
Centromeres and kinetochores: From epigenetics to mitotic checkpoint signaling
-
1:CAS:528:DC%2BD3sXhs1SnsL4%3D 12600307
-
Cleveland DW, Mao Y, Sullivan KF. Centromeres and kinetochores: from epigenetics to mitotic checkpoint signaling. Cell. 2003;112(4):407-21.
-
(2003)
Cell
, vol.112
, Issue.4
, pp. 407-421
-
-
Cleveland, D.W.1
Mao, Y.2
Sullivan, K.F.3
-
27
-
-
79958032907
-
Heterochromatin is required for normal distribution of Neurospora crassa CenH3
-
3133421 1:CAS:528:DC%2BC3MXnvFWlu7Y%3D 21505064
-
Smith KM, Phatale PA, Sullivan CM, Pomraning KR, Freitag M. Heterochromatin is required for normal distribution of Neurospora crassa CenH3. Mol Cell Biol. 2011;31(12):2528-42.
-
(2011)
Mol Cell Biol
, vol.31
, Issue.12
, pp. 2528-2542
-
-
Smith, K.M.1
Phatale, P.A.2
Sullivan, C.M.3
Pomraning, K.R.4
Freitag, M.5
-
28
-
-
3843076217
-
Centromeric DNA sequences in the pathogenic yeast Candida albicans are all different and unique
-
509209 1:CAS:528:DC%2BD2cXmvVKgtbw%3D 15272074
-
Sanyal K, Baum M, Carbon J. Centromeric DNA sequences in the pathogenic yeast Candida albicans are all different and unique. Proc Natl Acad Sci USA. 2004;101(31):11374-9.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.31
, pp. 11374-11379
-
-
Sanyal, K.1
Baum, M.2
Carbon, J.3
-
29
-
-
77955240924
-
New capabilities for Mycosphaerella graminicola research
-
1:CAS:528:DC%2BC3cXhtFCru73J 20696006
-
Bowler J, Scott E, Tailor R, Scalliet G, Ray J, Csukai M. New capabilities for Mycosphaerella graminicola research. Mol Plant Pathol. 2010;11(5):691-704.
-
(2010)
Mol Plant Pathol
, vol.11
, Issue.5
, pp. 691-704
-
-
Bowler, J.1
Scott, E.2
Tailor, R.3
Scalliet, G.4
Ray, J.5
Csukai, M.6
-
30
-
-
84879514195
-
Deciphering the cryptic genome: Genome-wide analyses of the rice pathogen Fusarium fujikuroi reveal complex regulation of secondary metabolism and novel metabolites
-
3694855 1:CAS:528:DC%2BC3sXhtFCntrbF 23825955
-
Wiemann P, Sieber CM, von Bargen KW, Studt L, Niehaus EM, Espino JJ, Huss K, Michielse CB, Albermann S, Wagner D, et al. Deciphering the cryptic genome: genome-wide analyses of the rice pathogen Fusarium fujikuroi reveal complex regulation of secondary metabolism and novel metabolites. PLoS Pathog. 2013;9(6):e1003475.
-
(2013)
PLoS Pathog
, vol.9
, Issue.6
, pp. e1003475
-
-
Wiemann, P.1
Sieber, C.M.2
Von Bargen, K.W.3
Studt, L.4
Niehaus, E.M.5
Espino, J.J.6
Huss, K.7
Michielse, C.B.8
Albermann, S.9
Wagner, D.10
-
31
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
146917 1:CAS:528:DyaK2sXlvFyhu7w%3D 9254694
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25(17):3389-402.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
32
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 2009;37(Web Server issue):202-8.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.WEB SERVER ISSUE
, pp. 202-208
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
33
-
-
0031839901
-
Structure of the chromosome VII centromere region in Neurospora crassa: Degenerate transposons and simple repeats
-
109131 1:CAS:528:DyaK1cXls1Sgurk%3D 9710630
-
Cambareri EB, Aisner R, Carbon J. Structure of the chromosome VII centromere region in Neurospora crassa: degenerate transposons and simple repeats. Mol Cell Biol. 1998;18(9):5465-77.
-
(1998)
Mol Cell Biol
, vol.18
, Issue.9
, pp. 5465-5477
-
-
Cambareri, E.B.1
Aisner, R.2
Carbon, J.3
-
34
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
1:CAS:528:DC%2BD2sXhtlajtrnF 17984973
-
Wicker T, Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell A, Leroy P, Morgante M, Panaud O, et al. A unified classification system for eukaryotic transposable elements. Nat Rev Genet. 2007;8(12):973-82.
-
(2007)
Nat Rev Genet
, vol.8
, Issue.12
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
Bennetzen, J.L.4
Capy, P.5
Chalhoub, B.6
Flavell, A.7
Leroy, P.8
Morgante, M.9
Panaud, O.10
-
35
-
-
33750219521
-
Organization of chromosome ends in the rice blast fungus Magnaporthe oryzae
-
1635262 1:CAS:528:DC%2BD28XhtFeisLfO 16963777
-
Rehmeyer C, Li W, Kusaba M, Kim YS, Brown D, Staben C, Dean R, Farman M. Organization of chromosome ends in the rice blast fungus Magnaporthe oryzae. Nucleic Acids Res. 2006;34(17):4685-701.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.17
, pp. 4685-4701
-
-
Rehmeyer, C.1
Li, W.2
Kusaba, M.3
Kim, Y.S.4
Brown, D.5
Staben, C.6
Dean, R.7
Farman, M.8
-
36
-
-
62549126963
-
Characterization of chromosome ends in the filamentous fungus Neurospora crassa
-
2651048 1:CAS:528:DC%2BD1MXksFemt70%3D 19104079
-
Wu C, Kim YS, Smith KM, Li W, Hood HM, Staben C, Selker EU, Sachs MS, Farman ML. Characterization of chromosome ends in the filamentous fungus Neurospora crassa. Genetics. 2009;181(3):1129-45.
-
(2009)
Genetics
, vol.181
, Issue.3
, pp. 1129-1145
-
-
Wu, C.1
Kim, Y.S.2
Smith, K.M.3
Li, W.4
Hood, H.M.5
Staben, C.6
Selker, E.U.7
Sachs, M.S.8
Farman, M.L.9
-
37
-
-
84903176919
-
Novel telomere-anchored PCR approach for studying sexual stage telomeres in Aspergillus nidulans
-
4057176 24927411
-
Wang N, Rizvydeen S, Vahedi M, Vargas Gonzalez DM, Allred AL, Perry DW, Mirabito PM, Kirk KE. Novel telomere-anchored PCR approach for studying sexual stage telomeres in Aspergillus nidulans. PLoS One. 2014;9(6):e99491.
-
(2014)
PLoS One
, vol.9
, Issue.6
, pp. e99491
-
-
Wang, N.1
Rizvydeen, S.2
Vahedi, M.3
Vargas Gonzalez, D.M.4
Allred, A.L.5
Perry, D.W.6
Mirabito, P.M.7
Kirk, K.E.8
-
38
-
-
0030789715
-
Incidence of SUC-RTM telomeric repeated genes in brewing and wild wine strains of Saccharomyces
-
1:CAS:528:DyaK2sXkslGgtLc%3D 9211787
-
Denayrolles M, de Villechenon EP, Lonvaud-Funel A, Aigle M. Incidence of SUC-RTM telomeric repeated genes in brewing and wild wine strains of Saccharomyces. Curr Genet. 1997;31(6):457-61.
-
(1997)
Curr Genet
, vol.31
, Issue.6
, pp. 457-461
-
-
Denayrolles, M.1
De Villechenon, E.P.2
Lonvaud-Funel, A.3
Aigle, M.4
-
39
-
-
0031038587
-
Expressed var genes are found in Plasmodium falciparum subtelomeric regions
-
231785 1:CAS:528:DyaK2sXmvVahsA%3D%3D 9001213
-
Hernandez-Rivas R, Mattei D, Sterkers Y, Peterson DS, Wellems TE, Scherf A. Expressed var genes are found in Plasmodium falciparum subtelomeric regions. Mol Cell Biol. 1997;17(2):604-11.
-
(1997)
Mol Cell Biol
, vol.17
, Issue.2
, pp. 604-611
-
-
Hernandez-Rivas, R.1
Mattei, D.2
Sterkers, Y.3
Peterson, D.S.4
Wellems, T.E.5
Scherf, A.6
-
40
-
-
77953139551
-
Rapid expansion and functional divergence of subtelomeric gene families in yeasts
-
2877759 1:CAS:528:DC%2BC3cXmsVGhtbc%3D 20471265
-
Brown CA, Murray AW, Verstrepen KJ. Rapid expansion and functional divergence of subtelomeric gene families in yeasts. Curr Biol. 2010;20(10):895-903.
-
(2010)
Curr Biol
, vol.20
, Issue.10
, pp. 895-903
-
-
Brown, C.A.1
Murray, A.W.2
Verstrepen, K.J.3
-
41
-
-
84864642785
-
Microevolution of Cryptococcus neoformans driven by massive tandem gene amplification
-
1:CAS:528:DC%2BC38XhtFagu7fK 22334577
-
Chow EW, Morrow CA, Djordjevic JT, Wood IA, Fraser JA. Microevolution of Cryptococcus neoformans driven by massive tandem gene amplification. Mol Biol Evol. 2012;29(8):1987-2000.
-
(2012)
Mol Biol Evol
, vol.29
, Issue.8
, pp. 1987-2000
-
-
Chow, E.W.1
Morrow, C.A.2
Djordjevic, J.T.3
Wood, I.A.4
Fraser, J.A.5
-
42
-
-
79953177468
-
Aligning short sequencing reads with Bowtie
-
Langmead B. Aligning short sequencing reads with Bowtie. Curr Protoc Bioinform. 2010;11:17.
-
(2010)
Curr Protoc Bioinform
, vol.11
, pp. 17
-
-
Langmead, B.1
-
43
-
-
79952598545
-
Identifying dispersed epigenomic domains from ChIP-Seq data
-
3051331 1:CAS:528:DC%2BC3MXjt1SksrY%3D 21325299
-
Song Q, Smith AD. Identifying dispersed epigenomic domains from ChIP-Seq data. Bioinformatics. 2011;27(6):870-1.
-
(2011)
Bioinformatics
, vol.27
, Issue.6
, pp. 870-871
-
-
Song, Q.1
Smith, A.D.2
-
44
-
-
72949121660
-
The fungus Neurospora crassa displays telomeric silencing mediated by multiple sirtuins and by methylation of histone H3 lysine 9
-
2596135 19014414
-
Smith KM, Kothe GO, Matsen CB, Khlafallah TK, Adhvaryu KK, Hemphill M, Freitag M, Motamedi MR, Selker EU. The fungus Neurospora crassa displays telomeric silencing mediated by multiple sirtuins and by methylation of histone H3 lysine 9. Epigenetics Chromatin. 2008;1(1):5.
-
(2008)
Epigenetics Chromatin
, vol.1
, Issue.1
, pp. 5
-
-
Smith, K.M.1
Kothe, G.O.2
Matsen, C.B.3
Khlafallah, T.K.4
Adhvaryu, K.K.5
Hemphill, M.6
Freitag, M.7
Motamedi, M.R.8
Selker, E.U.9
-
45
-
-
84876032224
-
Regional control of histone H3 lysine 27 methylation in Neurospora
-
3625340 1:CAS:528:DC%2BC3sXnsFKktr4%3D 23530226
-
Jamieson K, Rountree MR, Lewis ZA, Stajich JE, Selker EU. Regional control of histone H3 lysine 27 methylation in Neurospora. Proc Natl Acad Sci USA. 2013;110(15):6027-32.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.15
, pp. 6027-6032
-
-
Jamieson, K.1
Rountree, M.R.2
Lewis, Z.A.3
Stajich, J.E.4
Selker, E.U.5
-
46
-
-
84887305892
-
The Fusarium graminearum histone H3 K27 methyltransferase KMT6 regulates development and expression of secondary metabolite gene clusters
-
3814326 24204317
-
Connolly LR, Smith KM, Freitag M. The Fusarium graminearum histone H3 K27 methyltransferase KMT6 regulates development and expression of secondary metabolite gene clusters. PLoS Genet. 2013;9(10):e1003916.
-
(2013)
PLoS Genet
, vol.9
, Issue.10
, pp. e1003916
-
-
Connolly, L.R.1
Smith, K.M.2
Freitag, M.3
-
47
-
-
84920939145
-
Product binding enforces the genomic specificity of a yeast polycomb repressive complex
-
1:CAS:528:DC%2BC2MXnsl2gsQ%3D%3D 25533783
-
Dumesic PA, Homer CM, Moresco JJ, Pack LR, Shanle EK, Coyle SM, Strahl BD, Fujimori DG, Yates JR 3rd, Madhani HD. Product binding enforces the genomic specificity of a yeast polycomb repressive complex. Cell. 2015;160(1-2):204-18.
-
(2015)
Cell
, vol.160
, Issue.1-2
, pp. 204-218
-
-
Dumesic, P.A.1
Homer, C.M.2
Moresco, J.J.3
Pack, L.R.4
Shanle, E.K.5
Coyle, S.M.6
Strahl, B.D.7
Fujimori, D.G.8
Yates, J.R.9
Madhani, H.D.10
-
48
-
-
38849120550
-
Electrophoretic and cytological karyotyping of the foliar wheat pathogen Mycosphaerella graminicola reveals many chromosomes with a large size range
-
1:CAS:528:DC%2BD1cXivFWrtb4%3D 18333510
-
Mehrabi R, Taga M, Kema GH. Electrophoretic and cytological karyotyping of the foliar wheat pathogen Mycosphaerella graminicola reveals many chromosomes with a large size range. Mycologia. 2007;99(6):868-76.
-
(2007)
Mycologia
, vol.99
, Issue.6
, pp. 868-876
-
-
Mehrabi, R.1
Taga, M.2
Kema, G.H.3
-
49
-
-
0034041633
-
Centromere clustering is a major determinant of yeast interphase nuclear organization
-
1:CAS:528:DC%2BD3cXksVKnsbs%3D 10806101
-
Jin QW, Fuchs J, Loidl J. Centromere clustering is a major determinant of yeast interphase nuclear organization. J Cell Sci. 2000;113(Pt 11):1903-12.
-
(2000)
J Cell Sci
, vol.113
, Issue.PART 11
, pp. 1903-1912
-
-
Jin, Q.W.1
Fuchs, J.2
Loidl, J.3
-
50
-
-
0019162013
-
Isolation of a yeast centromere and construction of functional small circular chromosomes
-
1:CAS:528:DyaL3MXktl2hug%3D%3D 6999364
-
Clarke L, Carbon J. Isolation of a yeast centromere and construction of functional small circular chromosomes. Nature. 1980;287:504-9.
-
(1980)
Nature
, vol.287
, pp. 504-509
-
-
Clarke, L.1
Carbon, J.2
-
51
-
-
0010766518
-
Analysis of centromeric DNA in the fission yeast Schizosaccharomyces pombe
-
386906 1:CAS:528:DyaL28Xmt1Sit7Y%3D 3464952
-
Clarke L, Amstutz H, Fishel B, Carbon J. Analysis of centromeric DNA in the fission yeast Schizosaccharomyces pombe. Proc Natl Acad Sci USA. 1986;83(21):8253-7.
-
(1986)
Proc Natl Acad Sci USA
, vol.83
, Issue.21
, pp. 8253-8257
-
-
Clarke, L.1
Amstutz, H.2
Fishel, B.3
Carbon, J.4
-
52
-
-
79956319465
-
Comparative functional genomics of the fission yeasts
-
3131103 1:CAS:528:DC%2BC3MXmtFSgu7g%3D 21511999
-
Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, Wapinski I, Roy S, Lin MF, Heiman DI, et al. Comparative functional genomics of the fission yeasts. Science. 2011;332(6032):930-6.
-
(2011)
Science
, vol.332
, Issue.6032
, pp. 930-936
-
-
Rhind, N.1
Chen, Z.2
Yassour, M.3
Thompson, D.A.4
Haas, B.J.5
Habib, N.6
Wapinski, I.7
Roy, S.8
Lin, M.F.9
Heiman, D.I.10
-
53
-
-
84878765735
-
Stepwise evolution of essential centromere function in a Drosophila neogene
-
4119826 1:CAS:528:DC%2BC3sXosFymsr4%3D 23744945
-
Ross BD, Rosin L, Thomae AW, Hiatt MA, Vermaak D, de la Cruz AF, Imhof A, Mellone BG, Malik HS. Stepwise evolution of essential centromere function in a Drosophila neogene. Science. 2013;340(6137):1211-4.
-
(2013)
Science
, vol.340
, Issue.6137
, pp. 1211-1214
-
-
Ross, B.D.1
Rosin, L.2
Thomae, A.W.3
Hiatt, M.A.4
Vermaak, D.5
De La Cruz, A.F.6
Imhof, A.7
Mellone, B.G.8
Malik, H.S.9
-
54
-
-
0031762360
-
Non-Rabl patterns of centromere and telomere distribution in the interphase nuclei of plant cells
-
1:CAS:528:DyaK1MXisVygsQ%3D%3D 9886774
-
Dong F, Jiang J. Non-Rabl patterns of centromere and telomere distribution in the interphase nuclei of plant cells. Chromosome Res. 1998;6(7):551-8.
-
(1998)
Chromosome Res
, vol.6
, Issue.7
, pp. 551-558
-
-
Dong, F.1
Jiang, J.2
-
55
-
-
84887180583
-
Ordered kinetochore assembly in the human-pathogenic basidiomycetous yeast Cryptococcus neoformans
-
Kozubowski L, Yadav V, Chatterjee G, Sridhar S, Yamaguchi M, Kawamoto S, Bose I, Heitman J, Sanyal K. Ordered kinetochore assembly in the human-pathogenic basidiomycetous yeast Cryptococcus neoformans. MBio. 2013;4(5):e00613-4.
-
(2013)
MBio
, vol.4
, Issue.5
, pp. e00613-e00614
-
-
Kozubowski, L.1
Yadav, V.2
Chatterjee, G.3
Sridhar, S.4
Yamaguchi, M.5
Kawamoto, S.6
Bose, I.7
Heitman, J.8
Sanyal, K.9
-
56
-
-
33749505847
-
Formation of functional centromeric chromatin is specified epigenetically in Candida albicans
-
1595444 1:CAS:528:DC%2BD28XhtVyhtbjI 17001001
-
Baum M, Sanyal K, Mishra PK, Thaler N, Carbon J. Formation of functional centromeric chromatin is specified epigenetically in Candida albicans. Proc Natl Acad Sci USA. 2006;103(40):14877-82.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.40
, pp. 14877-14882
-
-
Baum, M.1
Sanyal, K.2
Mishra, P.K.3
Thaler, N.4
Carbon, J.5
-
57
-
-
34548742303
-
Centromere size and position in Candida albicans are evolutionarily conserved independent of DNA sequence heterogeneity
-
1:CAS:528:DC%2BD2sXhtVCrt73L 17588175
-
Mishra PK, Baum M, Carbon J. Centromere size and position in Candida albicans are evolutionarily conserved independent of DNA sequence heterogeneity. Mol Genet Genomics. 2007;278(4):455-65.
-
(2007)
Mol Genet Genomics
, vol.278
, Issue.4
, pp. 455-465
-
-
Mishra, P.K.1
Baum, M.2
Carbon, J.3
-
59
-
-
62149122605
-
Neocentromeres form efficiently at multiple possible loci in Candida albicans
-
2642679 19266018
-
Ketel C, Wang HS, McClellan M, Bouchonville K, Selmecki A, Lahav T, Gerami-Nejad M, Berman J. Neocentromeres form efficiently at multiple possible loci in Candida albicans. PLoS Genet. 2009;5(3):e1000400.
-
(2009)
PLoS Genet
, vol.5
, Issue.3
, pp. e1000400
-
-
Ketel, C.1
Wang, H.S.2
McClellan, M.3
Bouchonville, K.4
Selmecki, A.5
Lahav, T.6
Gerami-Nejad, M.7
Berman, J.8
-
60
-
-
84875973583
-
Efficient neocentromere formation is suppressed by gene conversion to maintain centromere function at native physical chromosomal loci in Candida albicans
-
3613581 1:CAS:528:DC%2BC3sXlslGlsrY%3D 23439889
-
Thakur J, Sanyal K. Efficient neocentromere formation is suppressed by gene conversion to maintain centromere function at native physical chromosomal loci in Candida albicans. Genome Res. 2013;23(4):638-52.
-
(2013)
Genome Res
, vol.23
, Issue.4
, pp. 638-652
-
-
Thakur, J.1
Sanyal, K.2
-
61
-
-
50149103619
-
Heterochromatin integrity affects chromosome reorganization after centromere dysfunction
-
1:CAS:528:DC%2BD1cXhtVSitrbF 18719285
-
Ishii K, Ogiyama Y, Chikashige Y, Soejima S, Masuda F, Kakuma T, Hiraoka Y, Takahashi K. Heterochromatin integrity affects chromosome reorganization after centromere dysfunction. Science. 2008;321(5892):1088-91.
-
(2008)
Science
, vol.321
, Issue.5892
, pp. 1088-1091
-
-
Ishii, K.1
Ogiyama, Y.2
Chikashige, Y.3
Soejima, S.4
Masuda, F.5
Kakuma, T.6
Hiraoka, Y.7
Takahashi, K.8
-
62
-
-
37849021647
-
Heterochromatin and RNAi are required to establish CENP-A chromatin at centromeres
-
2586718 1:CAS:528:DC%2BD1cXis1Wlug%3D%3D 18174443
-
Folco HD, Pidoux AL, Urano T, Allshire RC. Heterochromatin and RNAi are required to establish CENP-A chromatin at centromeres. Science. 2008;319(5859):94-7.
-
(2008)
Science
, vol.319
, Issue.5859
, pp. 94-97
-
-
Folco, H.D.1
Pidoux, A.L.2
Urano, T.3
Allshire, R.C.4
-
63
-
-
0842289255
-
Sequencing of a rice centromere uncovers active genes
-
1:CAS:528:DC%2BD2cXntlCgsA%3D%3D 14716315
-
Nagaki K, Cheng Z, Ouyang S, Talbert PB, Kim M, Jones KM, Henikoff S, Buell CR, Jiang J. Sequencing of a rice centromere uncovers active genes. Nat Genet. 2004;36(2):138-45.
-
(2004)
Nat Genet
, vol.36
, Issue.2
, pp. 138-145
-
-
Nagaki, K.1
Cheng, Z.2
Ouyang, S.3
Talbert, P.B.4
Kim, M.5
Jones, K.M.6
Henikoff, S.7
Buell, C.R.8
Jiang, J.9
-
64
-
-
84876051404
-
De novo centromere formation on a chromosome fragment in maize
-
3625319 1:CAS:528:DC%2BC3sXnsFWmsb8%3D 23530217
-
Fu S, Lv Z, Gao Z, Wu H, Pang J, Zhang B, Dong Q, Guo X, Wang XJ, Birchler JA, et al. De novo centromere formation on a chromosome fragment in maize. Proc Natl Acad Sci USA. 2013;110(15):6033-6.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.15
, pp. 6033-6036
-
-
Fu, S.1
Lv, Z.2
Gao, Z.3
Wu, H.4
Pang, J.5
Zhang, B.6
Dong, Q.7
Guo, X.8
Wang, X.J.9
Birchler, J.A.10
-
65
-
-
84925335260
-
Sequential de novo centromere formation and inactivation on a chromosomal fragment in maize
-
4371999 1:CAS:528:DC%2BC2MXjs1Grtr4%3D 25733907
-
Liu Y, Su H, Pang J, Gao Z, Wang XJ, Birchler JA, Han F. Sequential de novo centromere formation and inactivation on a chromosomal fragment in maize. Proc Natl Acad Sci USA. 2015;112(11):E1263-71.
-
(2015)
Proc Natl Acad Sci USA
, vol.112
, Issue.11
, pp. E1263-E1271
-
-
Liu, Y.1
Su, H.2
Pang, J.3
Gao, Z.4
Wang, X.J.5
Birchler, J.A.6
Han, F.7
-
66
-
-
84891677291
-
Maize centromeres expand and adopt a uniform size in the genetic background of oat
-
3875851 24100079
-
Wang K, Wu Y, Zhang W, Dawe RK, Jiang J. Maize centromeres expand and adopt a uniform size in the genetic background of oat. Genome Res. 2014;24(1):107-16.
-
(2014)
Genome Res
, vol.24
, Issue.1
, pp. 107-116
-
-
Wang, K.1
Wu, Y.2
Zhang, W.3
Dawe, R.K.4
Jiang, J.5
-
67
-
-
23044498502
-
Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome
-
1:CAS:528:DC%2BD2MXmsFKlsrs%3D 15976807
-
Cam HP, Sugiyama T, Chen ES, Chen X, FitzGerald PC, Grewal SI. Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome. Nat Genet. 2005;37(8):809-19.
-
(2005)
Nat Genet
, vol.37
, Issue.8
, pp. 809-819
-
-
Cam, H.P.1
Sugiyama, T.2
Chen, E.S.3
Chen, X.4
FitzGerald, P.C.5
Grewal, S.I.6
-
68
-
-
33645236868
-
Human centromeric chromatin is a dynamic chromosomal domain that can spread over noncentromeric DNA
-
1449668 1:CAS:528:DC%2BD28XivFWiu7s%3D 16537506
-
Lam AL, Boivin CD, Bonney CF, Rudd MK, Sullivan BA. Human centromeric chromatin is a dynamic chromosomal domain that can spread over noncentromeric DNA. Proc Natl Acad Sci USA. 2006;103(11):4186-91.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.11
, pp. 4186-4191
-
-
Lam, A.L.1
Boivin, C.D.2
Bonney, C.F.3
Rudd, M.K.4
Sullivan, B.A.5
-
69
-
-
7544227521
-
Centromeric chromatin exhibits a histone modification pattern that is distinct from both euchromatin and heterochromatin
-
1283111 1:CAS:528:DC%2BD2cXpt1ejsLc%3D 15475964
-
Sullivan BA, Karpen GH. Centromeric chromatin exhibits a histone modification pattern that is distinct from both euchromatin and heterochromatin. Nat Struct Mol Biol. 2004;11(11):1076-83.
-
(2004)
Nat Struct Mol Biol
, vol.11
, Issue.11
, pp. 1076-1083
-
-
Sullivan, B.A.1
Karpen, G.H.2
-
70
-
-
78751636707
-
Epigenetic engineering shows H3K4me2 is required for HJURP targeting and CENP-A assembly on a synthetic human kinetochore
-
3025471 1:CAS:528:DC%2BC3cXhsFGksb%2FJ 21157429
-
Bergmann JH, Rodriguez MG, Martins NM, Kimura H, Kelly DA, Masumoto H, Larionov V, Jansen LE, Earnshaw WC. Epigenetic engineering shows H3K4me2 is required for HJURP targeting and CENP-A assembly on a synthetic human kinetochore. EMBO J. 2011;30(2):328-40.
-
(2011)
EMBO J
, vol.30
, Issue.2
, pp. 328-340
-
-
Bergmann, J.H.1
Rodriguez, M.G.2
Martins, N.M.3
Kimura, H.4
Kelly, D.A.5
Masumoto, H.6
Larionov, V.7
Jansen, L.E.8
Earnshaw, W.C.9
-
71
-
-
58149166748
-
Histone modifications associated with both A and B chromosomes of maize
-
1:CAS:528:DC%2BD1cXhsFarsrbF 18987983
-
Jin W, Lamb JC, Zhang W, Kolano B, Birchler JA, Jiang J. Histone modifications associated with both A and B chromosomes of maize. Chromosome Res. 2008;16(8):1203-14.
-
(2008)
Chromosome Res
, vol.16
, Issue.8
, pp. 1203-1214
-
-
Jin, W.1
Lamb, J.C.2
Zhang, W.3
Kolano, B.4
Birchler, J.A.5
Jiang, J.6
-
72
-
-
61949250367
-
Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa
-
2661801 1:CAS:528:DC%2BD1MXjt12kurw%3D 19092133
-
Lewis ZA, Honda S, Khlafallah TK, Jeffress JK, Freitag M, Mohn F, Schubeler D, Selker EU. Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa. Genome Res. 2009;19(3):427-37.
-
(2009)
Genome Res
, vol.19
, Issue.3
, pp. 427-437
-
-
Lewis, Z.A.1
Honda, S.2
Khlafallah, T.K.3
Jeffress, J.K.4
Freitag, M.5
Mohn, F.6
Schubeler, D.7
Selker, E.U.8
-
73
-
-
20544448953
-
The role of heterochromatin in centromere function
-
1569473 1:CAS:528:DC%2BD2MXms1ejt7s%3D 15905142
-
Pidoux AL, Allshire RC. The role of heterochromatin in centromere function. Philos Trans R Soc Lond B Biol Sci. 2005;360(1455):569-79.
-
(2005)
Philos Trans R Soc Lond B Biol Sci
, vol.360
, Issue.1455
, pp. 569-579
-
-
Pidoux, A.L.1
Allshire, R.C.2
-
74
-
-
0028011256
-
Position effect variegation at fission yeast centromeres
-
1:CAS:528:DyaK2cXht12gtL4%3D 8287474
-
Allshire RC, Javerzat JP, Redhead NJ, Cranston G. Position effect variegation at fission yeast centromeres. Cell. 1994;76(1):157-69.
-
(1994)
Cell
, vol.76
, Issue.1
, pp. 157-169
-
-
Allshire, R.C.1
Javerzat, J.P.2
Redhead, N.J.3
Cranston, G.4
-
75
-
-
84864884507
-
Neocentromeres and epigenetically inherited features of centromeres
-
3409321 1:CAS:528:DC%2BC38XhtFWntrzJ 22723125
-
Burrack LS, Berman J. Neocentromeres and epigenetically inherited features of centromeres. Chromosome Res. 2012;20(5):607-19.
-
(2012)
Chromosome Res
, vol.20
, Issue.5
, pp. 607-619
-
-
Burrack, L.S.1
Berman, J.2
-
76
-
-
77957337127
-
Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase
-
2924309 20808889
-
Koren A, Tsai HJ, Tirosh I, Burrack LS, Barkai N, Berman J. Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase. PLoS Genet. 2010;6(8):e1001068.
-
(2010)
PLoS Genet
, vol.6
, Issue.8
, pp. e1001068
-
-
Koren, A.1
Tsai, H.J.2
Tirosh, I.3
Burrack, L.S.4
Barkai, N.5
Berman, J.6
-
77
-
-
43249118838
-
Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus
-
2289846 18404212
-
Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A, et al. Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. PLoS Genet. 2008;4(4):e1000046.
-
(2008)
PLoS Genet
, vol.4
, Issue.4
, pp. e1000046
-
-
Fedorova, N.D.1
Khaldi, N.2
Joardar, V.S.3
Maiti, R.4
Amedeo, P.5
Anderson, M.J.6
Crabtree, J.7
Silva, J.C.8
Badger, J.H.9
Albarraq, A.10
-
78
-
-
84868159385
-
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi
-
3516569 1:CAS:528:DC%2BC38XhvV2jsL%2FO 23236275
-
Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, et al. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. PLoS Pathog. 2012;8(12):e1003037.
-
(2012)
PLoS Pathog
, vol.8
, Issue.12
, pp. e1003037
-
-
Ohm, R.A.1
Feau, N.2
Henrissat, B.3
Schoch, C.L.4
Horwitz, B.A.5
Barry, K.W.6
Condon, B.J.7
Copeland, A.C.8
Dhillon, B.9
Glaser, F.10
-
79
-
-
84929687941
-
The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola
-
Dhillon B, Gill N, Hamelin RC, Goodwin SB. The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola. BMC Genom. 2014;15(1):1132.
-
(2014)
BMC Genom
, vol.15
, Issue.1
, pp. 1132
-
-
Dhillon, B.1
Gill, N.2
Hamelin, R.C.3
Goodwin, S.B.4
-
80
-
-
84860757181
-
Heterochromatin protein 1 forms distinct complexes to direct histone deacetylation and DNA methylation
-
Honda S, Lewis ZA, Shimada K, Fischle W, Sack R, Selker EU. Heterochromatin protein 1 forms distinct complexes to direct histone deacetylation and DNA methylation. Nat Struct Mol Biol 2012.
-
(2012)
Nat Struct Mol Biol
-
-
Honda, S.1
Lewis, Z.A.2
Shimada, K.3
Fischle, W.4
Sack, R.5
Selker, E.U.6
-
81
-
-
84897438553
-
Epigenetic control of effector gene expression in the plant pathogenic fungus Leptosphaeria maculans
-
3945186 24603691
-
Soyer JL, El Ghalid M, Glaser N, Ollivier B, Linglin J, Grandaubert J, Balesdent MH, Connolly LR, Freitag M, Rouxel T, et al. Epigenetic control of effector gene expression in the plant pathogenic fungus Leptosphaeria maculans. PLoS Genet. 2014;10(3):e1004227.
-
(2014)
PLoS Genet
, vol.10
, Issue.3
, pp. e1004227
-
-
Soyer, J.L.1
El Ghalid, M.2
Glaser, N.3
Ollivier, B.4
Linglin, J.5
Grandaubert, J.6
Balesdent, M.H.7
Connolly, L.R.8
Freitag, M.9
Rouxel, T.10
-
82
-
-
84897933810
-
Histone H3K9 and H3K27 methylation regulates fungal alkaloid biosynthesis in a fungal endophyte-plant symbiosis
-
Chujo T, Scott B: Histone H3K9 and H3K27 methylation regulates fungal alkaloid biosynthesis in a fungal endophyte-plant symbiosis. Mol Microbiol 2014.
-
(2014)
Mol Microbiol
-
-
Chujo, T.1
Scott, B.2
-
83
-
-
84907420615
-
Comparative analysis of metazoan chromatin organization
-
4227084 1:CAS:528:DC%2BC2cXhsVers7bP 25164756
-
Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, et al. Comparative analysis of metazoan chromatin organization. Nature. 2014;512(7515):449-52.
-
(2014)
Nature
, vol.512
, Issue.7515
, pp. 449-452
-
-
Ho, J.W.1
Jung, Y.L.2
Liu, T.3
Alver, B.H.4
Lee, S.5
Ikegami, K.6
Sohn, K.A.7
Minoda, A.8
Tolstorukov, M.Y.9
Appert, A.10
-
84
-
-
79551590310
-
Broad chromosomal domains of histone modification patterns in C. Elegans
-
3032926 1:CAS:528:DC%2BC3MXitFSrt7o%3D 21177964
-
Liu T, Rechtsteiner A, Egelhofer TA, Vielle A, Latorre I, Cheung MS, Ercan S, Ikegami K, Jensen M, Kolasinska-Zwierz P, et al. Broad chromosomal domains of histone modification patterns in C. elegans. Genome Res. 2011;21(2):227-36.
-
(2011)
Genome Res
, vol.21
, Issue.2
, pp. 227-236
-
-
Liu, T.1
Rechtsteiner, A.2
Egelhofer, T.A.3
Vielle, A.4
Latorre, I.5
Cheung, M.S.6
Ercan, S.7
Ikegami, K.8
Jensen, M.9
Kolasinska-Zwierz, P.10
-
85
-
-
84870679663
-
Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana
-
3510029 1:CAS:528:DC%2BC38XhvVKjt77M 23209430
-
Deleris A, Stroud H, Bernatavichute Y, Johnson E, Klein G, Schubert D, Jacobsen SE. Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana. PLoS Genet. 2012;8(11):e1003062.
-
(2012)
PLoS Genet
, vol.8
, Issue.11
, pp. e1003062
-
-
Deleris, A.1
Stroud, H.2
Bernatavichute, Y.3
Johnson, E.4
Klein, G.5
Schubert, D.6
Jacobsen, S.E.7
-
86
-
-
84912127424
-
Redundant mechanisms to form silent chromatin at pericentromeric regions rely on BEND3 and DNA methylation
-
1:CAS:528:DC%2BC2cXhvV2nu7vN 25457167
-
Saksouk N, Barth TK, Ziegler-Birling C, Olova N, Nowak A, Rey E, Mateos-Langerak J, Urbach S, Reik W, Torres-Padilla ME, et al. Redundant mechanisms to form silent chromatin at pericentromeric regions rely on BEND3 and DNA methylation. Mol Cell. 2014;56(4):580-94.
-
(2014)
Mol Cell
, vol.56
, Issue.4
, pp. 580-594
-
-
Saksouk, N.1
Barth, T.K.2
Ziegler-Birling, C.3
Olova, N.4
Nowak, A.5
Rey, E.6
Mateos-Langerak, J.7
Urbach, S.8
Reik, W.9
Torres-Padilla, M.E.10
-
87
-
-
78751657937
-
Accidental amplification and inactivation of a methyltransferase gene eliminates cytosine methylation in Mycosphaerella graminicola
-
2940312 1:CAS:528:DC%2BC3cXhsFOnt7%2FJ 20610411
-
Dhillon B, Cavaletto JR, Wood KV, Goodwin SB. Accidental amplification and inactivation of a methyltransferase gene eliminates cytosine methylation in Mycosphaerella graminicola. Genetics. 2010;186(1):67-77.
-
(2010)
Genetics
, vol.186
, Issue.1
, pp. 67-77
-
-
Dhillon, B.1
Cavaletto, J.R.2
Wood, K.V.3
Goodwin, S.B.4
-
88
-
-
0029746494
-
Evidence for silencing compartments within the yeast nucleus: A role for telomere proximity and Sir protein concentration in silencer-mediated repression
-
1:CAS:528:DyaK28Xks1OntL8%3D 8698239
-
Maillet L, Boscheron C, Gotta M, Marcand S, Gilson E, Gasser SM. Evidence for silencing compartments within the yeast nucleus: a role for telomere proximity and Sir protein concentration in silencer-mediated repression. Genes Dev. 1996;10(14):1796-811.
-
(1996)
Genes Dev
, vol.10
, Issue.14
, pp. 1796-1811
-
-
Maillet, L.1
Boscheron, C.2
Gotta, M.3
Marcand, S.4
Gilson, E.5
Gasser, S.M.6
-
89
-
-
21844444077
-
Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes
-
1084335 15839726
-
Bolzer A, Kreth G, Solovei I, Koehler D, Saracoglu K, Fauth C, Muller S, Eils R, Cremer C, Speicher MR, et al. Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes. PLoS Biol. 2005;3(5):e157.
-
(2005)
PLoS Biol
, vol.3
, Issue.5
, pp. e157
-
-
Bolzer, A.1
Kreth, G.2
Solovei, I.3
Koehler, D.4
Saracoglu, K.5
Fauth, C.6
Muller, S.7
Eils, R.8
Cremer, C.9
Speicher, M.R.10
-
90
-
-
84908439526
-
Reactivation of developmentally silenced globin genes by forced chromatin looping
-
4134511 1:CAS:528:DC%2BC2cXhtlymtLnJ 25126789
-
Deng W, Rupon JW, Krivega I, Breda L, Motta I, Jahn KS, Reik A, Gregory PD, Rivella S, Dean A, et al. Reactivation of developmentally silenced globin genes by forced chromatin looping. Cell. 2014;158(4):849-60.
-
(2014)
Cell
, vol.158
, Issue.4
, pp. 849-860
-
-
Deng, W.1
Rupon, J.W.2
Krivega, I.3
Breda, L.4
Motta, I.5
Jahn, K.S.6
Reik, A.7
Gregory, P.D.8
Rivella, S.9
Dean, A.10
-
91
-
-
77952744854
-
A three-dimensional model of the yeast genome
-
2874121 1:CAS:528:DC%2BC3cXlsVyiurs%3D 20436457
-
Duan Z, Andronescu M, Schutz K, McIlwain S, Kim YJ, Lee C, Shendure J, Fields S, Blau CA, Noble WS. A three-dimensional model of the yeast genome. Nature. 2010;465(7296):363-7.
-
(2010)
Nature
, vol.465
, Issue.7296
, pp. 363-367
-
-
Duan, Z.1
Andronescu, M.2
Schutz, K.3
McIlwain, S.4
Kim, Y.J.5
Lee, C.6
Shendure, J.7
Fields, S.8
Blau, C.A.9
Noble, W.S.10
-
92
-
-
84923169410
-
Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. Pombe
-
Mizuguchi T, Fudenberg G, Mehta S, Belton JM, Taneja N, Folco HD, FitzGerald P, Dekker J, Mirny L, Barrowman J et al. Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe. Nature 2014.
-
(2014)
Nature
-
-
Mizuguchi, T.1
Fudenberg, G.2
Mehta, S.3
Belton, J.M.4
Taneja, N.5
Folco, H.D.6
FitzGerald, P.7
Dekker, J.8
Mirny, L.9
Barrowman, J.10
-
93
-
-
84921685857
-
Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis
-
4347903 1:CAS:528:DC%2BC2cXhtlKmtb3J 25132175
-
Feng S, Cokus SJ, Schubert V, Zhai J, Pellegrini M, Jacobsen SE. Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis. Mol Cell. 2014;55(5):694-707.
-
(2014)
Mol Cell
, vol.55
, Issue.5
, pp. 694-707
-
-
Feng, S.1
Cokus, S.J.2
Schubert, V.3
Zhai, J.4
Pellegrini, M.5
Jacobsen, S.E.6
-
94
-
-
84857467274
-
Progressive polycomb assembly on H3K27me3 compartments generates polycomb bodies with developmentally regulated motion
-
3262012 1:CAS:528:DC%2BC38XhvFylsLo%3D 22275876
-
Cheutin T, Cavalli G. Progressive polycomb assembly on H3K27me3 compartments generates polycomb bodies with developmentally regulated motion. PLoS Genet. 2012;8(1):e1002465.
-
(2012)
PLoS Genet
, vol.8
, Issue.1
, pp. e1002465
-
-
Cheutin, T.1
Cavalli, G.2
-
95
-
-
84876761942
-
Genomic distribution of maize facultative heterochromatin marked by trimethylation of H3K27
-
3634688 1:CAS:528:DC%2BC3sXnsFSjuro%3D 23463775
-
Makarevitch I, Eichten SR, Briskine R, Waters AJ, Danilevskaya ON, Meeley RB, Myers CL, Vaughn MW, Springer NM. Genomic distribution of maize facultative heterochromatin marked by trimethylation of H3K27. Plant Cell. 2013;25(3):780-93.
-
(2013)
Plant Cell
, vol.25
, Issue.3
, pp. 780-793
-
-
Makarevitch, I.1
Eichten, S.R.2
Briskine, R.3
Waters, A.J.4
Danilevskaya, O.N.5
Meeley, R.B.6
Myers, C.L.7
Vaughn, M.W.8
Springer, N.M.9
-
97
-
-
0034877050
-
Efficient Agrobacterium tumefaciens-mediated gene disruption in the phytopathogen Mycosphaerella graminicola
-
1:CAS:528:DC%2BD3MXlsVWnsLg%3D 11525415
-
Zwiers LH, De Waard MA. Efficient Agrobacterium tumefaciens-mediated gene disruption in the phytopathogen Mycosphaerella graminicola. Curr Genet. 2001;39(5-6):388-93.
-
(2001)
Curr Genet
, vol.39
, Issue.5-6
, pp. 388-393
-
-
Zwiers, L.H.1
De Waard, M.A.2
-
98
-
-
67849083041
-
Tools for fungal proteomics: Multifunctional neurospora vectors for gene replacement, protein expression and protein purification
-
2674810 1:CAS:528:DC%2BD1MXlvFCmsb0%3D 19171944
-
Honda S, Selker EU. Tools for fungal proteomics: multifunctional neurospora vectors for gene replacement, protein expression and protein purification. Genetics. 2009;182(1):11-23.
-
(2009)
Genetics
, vol.182
, Issue.1
, pp. 11-23
-
-
Honda, S.1
Selker, E.U.2
-
99
-
-
34248562159
-
Fusion PCR and gene targeting in Aspergillus nidulans
-
1:CAS:528:DC%2BD2sXhtFGjtL%2FN 17406574
-
Szewczyk E, Nayak T, Oakley CE, Edgerton H, Xiong Y, Taheri-Talesh N, Osmani SA, Oakley BR. Fusion PCR and gene targeting in Aspergillus nidulans. Nat Protoc. 2006;1(6):3111-20.
-
(2006)
Nat Protoc
, vol.1
, Issue.6
, pp. 3111-3120
-
-
Szewczyk, E.1
Nayak, T.2
Oakley, C.E.3
Edgerton, H.4
Xiong, Y.5
Taheri-Talesh, N.6
Osmani, S.A.7
Oakley, B.R.8
-
100
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
1:CAS:528:DyaE28XksVehtrY%3D 942051
-
Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976;72:248-54.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
101
-
-
0037693853
-
Trimethylated lysine 9 of histone H3 is a mark for DNA methylation in Neurospora crassa
-
1:CAS:528:DC%2BD3sXjt1Ont7w%3D 12679815
-
Tamaru H, Zhang X, McMillen D, Singh PB, Nakayama J, Grewal SI, Allis CD, Cheng X, Selker EU. Trimethylated lysine 9 of histone H3 is a mark for DNA methylation in Neurospora crassa. Nat Genet. 2003;34(1):75-9.
-
(2003)
Nat Genet
, vol.34
, Issue.1
, pp. 75-79
-
-
Tamaru, H.1
Zhang, X.2
McMillen, D.3
Singh, P.B.4
Nakayama, J.5
Grewal, S.I.6
Allis, C.D.7
Cheng, X.8
Selker, E.U.9
-
102
-
-
84937605280
-
Chromatin analyses of Zymoseptoria tritici: Methods for chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq)
-
1:CAS:528:DC%2BC2MXhtF2rsbjM 25857259
-
Soyer JL, Moller M, Schotanus K, Connolly LR, Galazka JM, Freitag M, Stukenbrock EH. Chromatin analyses of Zymoseptoria tritici: methods for chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq). Fungal Genet Biol 2015;79:63-70.
-
(2015)
Fungal Genet Biol
, vol.79
, pp. 63-70
-
-
Soyer, J.L.1
Moller, M.2
Schotanus, K.3
Connolly, L.R.4
Galazka, J.M.5
Freitag, M.6
Stukenbrock, E.H.7
-
103
-
-
84934438174
-
Library preparation and data analysis packages for rapid genome sequencing
-
3686501 1:CAS:528:DC%2BC3sXksFWhs7o%3D 23065605
-
Pomraning KR, Smith KM, Bredeweg EL, Connolly LR, Phatale PA, Freitag M. Library preparation and data analysis packages for rapid genome sequencing. Methods Mol Biol. 2012;944:1-22.
-
(2012)
Methods Mol Biol
, vol.944
, pp. 1-22
-
-
Pomraning, K.R.1
Smith, K.M.2
Bredeweg, E.L.3
Connolly, L.R.4
Phatale, P.A.5
Freitag, M.6
-
104
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
2723002 19505943
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. The sequence alignment/map format and SAMtools. Bioinformatics. 2009;25(16):2078-9.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
105
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
2832824 1:CAS:528:DC%2BC3cXivFGkurc%3D 20110278
-
Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010;26(6):841-2.
-
(2010)
Bioinformatics
, vol.26
, Issue.6
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
106
-
-
84875634162
-
Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
-
3603213 1:CAS:528:DC%2BC3sXkvFKrur4%3D 22517427
-
Thorvaldsdottir H, Robinson JT, Mesirov JP. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform. 2013;14(2):178-92.
-
(2013)
Brief Bioinform
, vol.14
, Issue.2
, pp. 178-192
-
-
Thorvaldsdottir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
107
-
-
0002282074
-
A new measure of rank correlation
-
Kendall M. A new measure of rank correlation. Biometrika. 1938;30:81-9.
-
(1938)
Biometrika
, vol.30
, pp. 81-89
-
-
Kendall, M.1
|