Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Proceedings of the National Academy of Sciences of the United States of America

Volumn 108, Issue 22, 2011, Pages 9166-9171

  Duplessis, Sébastien ^a   Cuomo, Christina A ^b   Lin, Yao Cheng ^c   Aerts, Andrea ^d   Tisserant, Emilie ^a   Veneault Fourrey, Claire ^a   Joly, David L ^e,o   Hacquard, Stéphane ^a,p   Amselem, Joëlle ^f   Cantarel, Brandi L ^g   Chiu, Readman ^h   Coutinho, Pedro M ^g   Feaue, Nicolas ^e,q   Field, Matthew ^h   Frey, Pascal ^a   Gelhaye, Eric ^a   Goldberg, Jonathan ^b   Grabherr, Manfred G ^b   Kodira, Chinnappa D ^b,r   Kohler, Annegret ^a   Kües, Ursula ⁱ   Lindquist, Erika A ^d   Lucas, Susan M ^d   Mago, Rohit ^j   Mauceli, Evan ^b   Morin, Emmanuelle ^a   Murat, Claude ^a   Pangilinan, Jasmyn L ^d   Park, Robert ^k   Pearson, Matthew ^b   Quesneville, Hadi ^f   Rouhier, Nicolas ^a   Sakthikumar, Sharadha ^b   Salamov, Asaf A ^d   Schmutz, Jeremy ^d   Selles, Benjamin ^a   Shapiro, Harris ^d   Tanguay, Philippe ^e   Tuskan, Gerald A ^d,l   Henrissat, Bernard ^g   Van De Peer, Yves ^c   Rouzé, Pierre ^c   Ellis, Jeffrey G ^j   Dodds, Peter N ^j   Schein, Jacqueline E ^h   Zhong, Shaobin ^m,s   Hamelin, Richard C ^e   Grigoriev, Igor V ^d   Szabo, Les J ^m,n   Martin, Francis ^a   more..

^a UNIVERSITÉ DE LORRAINE   (France)

^b HARVARD UNIVERSITY   (United States)

^c DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^d U S DEPARTMENT OF ENERGY   (United States)

^e NATURAL RESOURCES CANADA   (Canada)

^f Centre de recherche de Versailles   (France)

^g CNRS   (France)

^h BRITISH COLUMBIA CANCER AGENCY   (Canada)

ⁱ UNIVERSITY OF GÖTTINGEN   (Germany)

^j CSIRO   (Australia)

^k UNIVERSITY OF SYDNEY   (Australia)

^l OAK RIDGE NATIONAL LABORATORY   (United States)

^m UNIVERSITY OF MINNESOTA   (United States)

ⁿ USDA Agricultural Research Service Cereal Disease Laboratory   (United States)

^o AGRICULTURE AND AGRI FOOD CANADA   (Canada)

^p MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH   (Germany)

^q UMR 1202 BIOGECO   (France)

^r 454 Life Sciences Corporation   (United States)

^s NORTH DAKOTA STATE UNIVERSITY   (United States)

more..

Author keywords

Basidiomycete; Comparative genomics; Evolution; Plant pathogen; Rust disease

Indexed keywords

AMINO ACID; HYDROLASE; NITROGEN; OLIGOPEPTIDE; SULFUR; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BARLEY; CONTROLLED STUDY; GENE EXPRESSION; GENE SEQUENCE; GENETIC ANALYSIS; GENOMICS; HYDROLYSIS; INNATE IMMUNITY; MELAMPSORA LARICIPOPULINA; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; NUTRIENT CONTENT; PLANT CELL; PLANT DISEASE; PLANT GENOME; PLANT IMMUNITY; PLANT LEAF; PRIORITY JOURNAL; PROTEIN SECRETION; PROTEIN TRANSPORT; PUCCINIA GRAMINIS; RUST (PLANT DISEASE); STEM RUST; UPREGULATION; WHEAT;

BASIDIOMYCOTA; FUNGI; GENE EXPRESSION PROFILING; GENES, FUNGAL; GENOME; GENOME, FUNGAL; MODELS, GENETIC; NITRATES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHYLOGENY; PLANT DISEASES; PLANT LEAVES; SEQUENCE ANALYSIS, DNA; SULFATES; TRITICUM;

EUKARYOTA; HORDEUM; MELAMPSORA; PUCCINIA GRAMINIS F. SP. TRITICI; UREDINALES;

EID: 79959340303     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1019315108     Document Type: Article

References (31)

1. Aime MC, et al. (2006) An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences. Mycologia 98:896-905. (Pubitemid 46683213)
2. Cummins GB, Hiratsuka Y (2004) Illustrated Genera of Rust Fungi (APS Press, St. Paul) 3rd Ed.
3. Leonard KJ, Szabo LJ (2005) Stem rust of small grains and grasses caused by Puccinia graminis. Mol Plant Pathol 6:99-111. (Pubitemid 40554777)
4. Stokstad E (2007) Plant pathology. Deadly wheat fungus threatens world's breadbaskets. Science 315:1786-1787.
5. Rubin EM (2008) Genomics of cellulosic biofuels. Nature 454:841-845.
6. Duplessis S, Major I, Martin F, Séguin A (2009) Poplar and pathogen interactions: insights from Populus genome-wide analyses of resistance and defense gene families and gene expression profiling. Crit Rev Plant Sci 28:309-334.
7. Gérard PR, Husson C, Pinon J, Frey P (2006) Comparison of genetic and virulence diversity of Melampsora larici-populina populations on wild and cultivated poplar and influence of the alternate host. Phytopathology 96:1027-1036. (Pubitemid 44300205)
8. Dodds PN, et al. (2009) Effectors of biotrophic fungi and oomycetes: Pathogenicity factors and triggers of host resistance. New Phytol 183:993-1000.
9. Ochman H, Moran NA (2001) Genes lost and genes found: Evolution of bacterial pathogenesis and symbiosis. Science 292:1096-1099.
10. Corradi N, Pombert JF, Farinelli L, Didier ES, Keeling PJ (2010) The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis. Nat Commun 1:77.
11. Spanu PD, et al. (2010) Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science 330:1543-1546.
12. Baxter L, et al. (2010) Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome. Science 330:1549-1551.
13. Cuomo CA, Birren BW (2010) The fungal genome initiative and lessons learned from genome sequencing. Methods Enzymol 470:833-855.
14. Martin F, et al. (2008) The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature 452:88-92. (Pubitemid 351355085)
15. Kämper J, et al. (2006) Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature 444:97-101. (Pubitemid 44684763)
16. Schirawski J, et al. (2010) Pathogenicity determinants in smut fungi revealed by genome comparison. Science 330:1546-1548.
17. Haas B, et al. (2009) Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 461:393-398.
18. Raffaele S, et al. (2010) Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science 330:1540-1543.
19. Rouxel T, et al. (2011) Effector diversification within compartments of the Leptosphaeria maculans genome affected by repeat-induced point mutations. Nature Commun 2:202.
20. Panstruga R, Dodds PN (2009) Terrific protein traffic: the mystery of effector protein delivery by filamentous plant pathogens. Science 324:748-750.
21. Ellis JG, Rafiqi M, Gan P, Chakrabarti A, Dodds PN (2009) Recent progress in discovery and functional analysis of effector proteins of fungal and oomycete plant pathogens. Curr Opin Plant Biol 12:399-405.
22. Voegele RT, Hahn M, Mendgen K (2009) The uredinales: cytology, biochemistry, and molecular biology. The Mycota V: Plant Relationships, ed Deising HB (Spinger, Berlin), pp 69-98.
23. Xu J, et al. (2011) Gene discovery in EST sequences from the wheat leaf rust fungus Puccinia triticina sexual spores, asexual spores and haustoria, compared to other rust and corn smut fungi. BMC Genomics 12:161.
24. Catanzariti A-M, Dodds PN, Lawrence GJ, Ayliffe MA, Ellis JG (2006) Haustorially expressed secreted proteins from flax rust are highly enriched for avirulence elicitors. Plant Cell 18:243-256. (Pubitemid 43951327)
25. Godfrey D, et al. (2010) Powdery mildew fungal effector candidates share N-terminal Y/F/WxC-motif. BMC Genomics 11:317.
26. Cantarel BL, et al. (2009) The Carbohydrate-Active EnZymes database (CAZy): An expert resource for Glycogenomics. Nucleic Acids Res 37(Database issue): D233-D238.
27. Ohm RA, et al. (2010) Genome sequence of the model mushroom Schizophyllum commune. Nat Biotechnol 28:957-963.
28. El Gueddari NE, Rauchhaus U, Moerschbacher BM, Deising HB (2002) Developmentally regulated conversion of surface-exposed chitin to chitosan in cell walls of plant pathogenic fungi. New Phytol 156:103-112.
29. Wahl R, Wippel K, Goos S, Kämper J, Sauer N (2010) A novel high-affinity sucrose transporter is required for virulence of the plant pathogen Ustilago maydis. PLoS Biol 8:e1000303.
30. Voegele RT, Struck C, Hahn M, Mendgen K (2001) The role of haustoria in sugar supply during infection of broad bean by the rust fungus Uromyces fabae. Proc Natl Acad Sci USA 98:8133-8138. (Pubitemid 32642699)
31. Slot JC, Hibbett DS (2007) Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: a phylogenetic study. PLoS ONE 2:e1097.