메뉴 건너뛰기




Volumn 31, Issue 2, 2014, Pages 376-386

Plant expansins in bacteria and fungi: Evolution by horizontal gene transfer and independent domain fusion

Author keywords

convergence; endoglucanases; grass pollen allergens; plant pathogens; xenology

Indexed keywords

CARBOHYDRATE BINDING PROTEIN; DNA FRAGMENT; GLUCAN SYNTHASE; PATULIN;

EID: 84893112532     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mst206     Document Type: Article
Times cited : (83)

References (53)
  • 1
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • Abascal F, Zardoya R, Posada D. 2005. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104-2105.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 2
    • 77954257799 scopus 로고    scopus 로고
    • ConSurf 2010: Calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
    • Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N. 2010. ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Res. 38: W529-W533.
    • (2010) Nucleic Acids Res. , vol.38
    • Ashkenazy, H.1    Erez, E.2    Martz, E.3    Pupko, T.4    Ben-Tal, N.5
  • 3
    • 0031826798 scopus 로고    scopus 로고
    • The discoidin domain family revisited: New members from prokaryotes and a homology-based fold prediction
    • Baumgartner S, Hofmann K, Chiquet-Ehrismann R, Bucher P. 1998. The discoidin domain family revisited: new members from prokaryotes and a homology-based fold prediction. Protein Sci. 7: 1626-1631.
    • (1998) Protein Sci. , vol.7 , pp. 1626-1631
    • Baumgartner, S.1    Hofmann, K.2    Chiquet-Ehrismann, R.3    Bucher, P.4
  • 4
    • 0037819441 scopus 로고    scopus 로고
    • Widespread horizontal transfer of mitochondrial genes in flowering plants
    • Bergthorsson U, Adams KL, Thomason B, Palmer JD. 2003. Widespread horizontal transfer of mitochondrial genes in flowering plants. Nature 424:197-201.
    • (2003) Nature , vol.424 , pp. 197-201
    • Bergthorsson, U.1    Adams, K.L.2    Thomason, B.3    Palmer, J.D.4
  • 6
    • 43049156404 scopus 로고    scopus 로고
    • EglD, a putative endoglucanase, with an expansin like domain is localized in the conidial cell wall of Aspergillus nidulans
    • Bouzarelou D, Billini M, Roumelioti K, Sophianopoulou V. 2008. EglD, a putative endoglucanase, with an expansin like domain is localized in the conidial cell wall of Aspergillus nidulans. Fungal Genet Biol. 45: 839-850.
    • (2008) Fungal Genet Biol. , vol.45 , pp. 839-850
    • Bouzarelou, D.1    Billini, M.2    Roumelioti, K.3    Sophianopoulou, V.4
  • 7
    • 48549100257 scopus 로고    scopus 로고
    • Role of swollenin, an expansin-like protein from Trichoderma, in plant root colonization
    • Brotman Y, Briff E, Viterbo A, Chet I. 2008. Role of swollenin, an expansin-like protein from Trichoderma, in plant root colonization. Plant Physiol. 147:779-789.
    • (2008) Plant Physiol. , vol.147 , pp. 779-789
    • Brotman, Y.1    Briff, E.2    Viterbo, A.3    Chet, I.4
  • 8
    • 84871715813 scopus 로고    scopus 로고
    • Selaginella moellendorffii has a reduced and highly conserved expansin superfamily with genes more closely related to angiosperms than to bryophytes
    • Carey RE, Hepler NK, Cosgrove DJ. 2013. Selaginella moellendorffii has a reduced and highly conserved expansin superfamily with genes more closely related to angiosperms than to bryophytes. BMC Plant Biol. 13:4.
    • (2013) BMC Plant Biol. , vol.13 , pp. 4
    • Carey, R.E.1    Hepler, N.K.2    Cosgrove, D.J.3
  • 9
    • 0034699445 scopus 로고    scopus 로고
    • Loosening of plant cell walls by expansins
    • Cosgrove DJ. 2000. Loosening of plant cell walls by expansins. Nature 407:321-326.
    • (2000) Nature , vol.407 , pp. 321-326
    • Cosgrove, D.J.1
  • 10
    • 27644525170 scopus 로고    scopus 로고
    • Growth of the plant cell wall
    • Cosgrove DJ. 2005. Growth of the plant cell wall. Nat Rev Mol Cell Biol. 6: 850-861.
    • (2005) Nat Rev Mol Cell Biol. , vol.6 , pp. 850-861
    • Cosgrove, D.J.1
  • 11
    • 27244460680 scopus 로고    scopus 로고
    • Gene transfer from a parasitic flowering plant to a fern
    • Davis CC, Anderson WR, Wurdack KJ. 2005. Gene transfer from a parasitic flowering plant to a fern. Proc Biol Sci. 272:2237-2242.
    • (2005) Proc Biol Sci. , vol.272 , pp. 2237-2242
    • Davis, C.C.1    Anderson, W.R.2    Wurdack, K.J.3
  • 12
    • 3442897333 scopus 로고    scopus 로고
    • Host-to-parasite gene transfer in flowering plants: Phylogenetic evidence from Malpighiales
    • Davis CC, Wurdack KJ. 2004. Host-to-parasite gene transfer in flowering plants: phylogenetic evidence from Malpighiales. Science 305: 676-678.
    • (2004) Science , vol.305 , pp. 676-678
    • Davis, C.C.1    Wurdack, K.J.2
  • 13
    • 34548768028 scopus 로고    scopus 로고
    • Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes
    • (20 co-authors)
    • Dunning Hotopp JC, Clark ME, Oliveira DC, et al. (20 co-authors). 2007. Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes. Science 317:1753-1756.
    • (2007) Science , vol.317 , pp. 1753-1756
    • Dunning Hotopp, J.C.1    Clark, M.E.2    Oliveira, D.C.3
  • 14
    • 0033523989 scopus 로고    scopus 로고
    • Protein interaction maps for complete genomes based on gene fusion events
    • Enright AJ, Iliopoulos I, Kyrpides NC, Ouzounis CA. 1999. Protein interaction maps for complete genomes based on gene fusion events. Nature 402:86-90.
    • (1999) Nature , vol.402 , pp. 86-90
    • Enright, A.J.1    Iliopoulos, I.2    Kyrpides, N.C.3    Ouzounis, C.A.4
  • 15
    • 84893137236 scopus 로고    scopus 로고
    • Biochemical analysis of expansin-like proteins from microbes
    • Forthcoming
    • Georgelis N, Nikolaidis N, Cosgrove DJ. Forthcoming 2013. Biochemical analysis of expansin-like proteins from microbes. Carbohydr Polym.
    • (2013) Carbohydr Polym
    • Georgelis, N.1    Nikolaidis, N.2    Cosgrove, D.J.3
  • 16
    • 79955753423 scopus 로고    scopus 로고
    • Structure-function analysis of the bacterial expansin EXLX1
    • Georgelis N, Tabuchi A, Nikolaidis N, Cosgrove DJ. 2011. Structure-function analysis of the bacterial expansin EXLX1. J Biol Chem. 286: 16814-16823.
    • (2011) J Biol Chem. , vol.286 , pp. 16814-16823
    • Georgelis, N.1    Tabuchi, A.2    Nikolaidis, N.3    Cosgrove, D.J.4
  • 17
    • 84866279744 scopus 로고    scopus 로고
    • Structural basis for entropy-driven cellulose binding by a type-A cellulose-binding module (CBM) and bacterial expansin
    • Georgelis N, Yennawar NH, Cosgrove DJ. 2012. Structural basis for entropy-driven cellulose binding by a type-A cellulose-binding module (CBM) and bacterial expansin. Proc Natl Acad Sci USA. 109:14830-14835.
    • (2012) Proc Natl Acad Sci USA. , vol.109 , pp. 14830-14835
    • Georgelis, N.1    Yennawar, N.H.2    Cosgrove, D.J.3
  • 19
    • 0033824470 scopus 로고    scopus 로고
    • DaliLite workbench for protein structure comparison
    • Holm L, Park J. 2000. DaliLite workbench for protein structure comparison. Bioinformatics 16:566-567.
    • (2000) Bioinformatics , vol.16 , pp. 566-567
    • Holm, L.1    Park, J.2
  • 20
    • 0034045514 scopus 로고    scopus 로고
    • The endo-beta-1,4-glucanase CelA of Clavibactermichiganensis subsp michiganensis is a pathogenicity determinant required for induction of bacterial wilt of tomato
    • Jahr H, Dreier J, Meletzus D, Bahro R, Eichenlaub R. 2000. The endo-beta-1,4-glucanase CelA of Clavibactermichiganensis subsp. michiganensis is a pathogenicity determinant required for induction of bacterial wilt of tomato. Mol Plant Microbe Interact. 13:703-714.
    • (2000) Mol Plant Microbe Interact. , vol.13 , pp. 703-714
    • Jahr, H.1    Dreier, J.2    Meletzus, D.3    Bahro, R.4    Eichenlaub, R.5
  • 22
    • 58149234214 scopus 로고    scopus 로고
    • Horizontal gene transfer: Sustaining pathogenicity and optimizing host-pathogen interactions
    • Kado CI. 2009. Horizontal gene transfer: sustaining pathogenicity and optimizing host-pathogen interactions. Mol Plant Pathol. 10: 143-150.
    • (2009) Mol Plant Pathol. , vol.10 , pp. 143-150
    • Kado, C.I.1
  • 23
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
    • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772-780.
    • (2013) Mol Biol Evol. , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 24
    • 71749093488 scopus 로고    scopus 로고
    • Functional and ecological impacts of horizontal gene transfer in eukaryotes
    • Keeling PJ. 2009. Functional and ecological impacts of horizontal gene transfer in eukaryotes. Curr Opin Genet Dev. 19:613-619.
    • (2009) Curr Opin Genet Dev. , vol.19 , pp. 613-619
    • Keeling, P.J.1
  • 25
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • Keeling PJ, Palmer JD. 2008. Horizontal gene transfer in eukaryotic evolution. Nat Rev Genet. 9:605-618.
    • (2008) Nat Rev Genet. , vol.9 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.D.2
  • 26
    • 55949096569 scopus 로고    scopus 로고
    • Crystal structure and activity of Bacillus subtilis YoaJ (EXLX1), a bacterial expansin that promotes root colonization
    • (11 co-authors)
    • Kerff F, Amoroso A, Herman R, et al. (11 co-authors). 2008. Crystal structure and activity of Bacillus subtilis YoaJ (EXLX1), a bacterial expansin that promotes root colonization. Proc Natl Acad Sci USA. 105:16876-16881.
    • (2008) Proc Natl Acad Sci USA. , vol.105 , pp. 16876-16881
    • Kerff, F.1    Amoroso, A.2    Herman, R.3
  • 27
    • 63549137273 scopus 로고    scopus 로고
    • Functional characterization of a bacterial expansin from Bacillus subtilis for enhanced enzymatic hydrolysis of cellulose
    • Kim ES, Lee HJ, Bang WG, Choi IG, Kim KH. 2009. Functional characterization of a bacterial expansin from Bacillus subtilis for enhanced enzymatic hydrolysis of cellulose. Biotechnol Bioeng. 102:1342-1353.
    • (2009) Biotechnol Bioeng. , vol.102 , pp. 1342-1353
    • Kim, E.S.1    Lee, H.J.2    Bang, W.G.3    Choi, I.G.4    Kim, K.H.5
  • 28
    • 0034780910 scopus 로고    scopus 로고
    • Horizontal gene transfer in prokaryotes: Quantification and classification
    • Koonin EV, Makarova KS, Aravind L. 2001. Horizontal gene transfer in prokaryotes: quantification and classification. Annu Rev Microbiol. 55:709-742.
    • (2001) Annu Rev Microbiol. , vol.55 , pp. 709-742
    • Koonin, E.V.1    Makarova, K.S.2    Aravind, L.3
  • 29
    • 0034517720 scopus 로고    scopus 로고
    • The cellulase encoded by the native plasmid of Clavibacter michiganensis ssp sepedonicus plays a role in virulence and contains an expansin-like domain
    • Laine MJ, Haapalainen M,Wahlroos T, Kankare K, Nissinen R, Kassuwi S, Metzler MC. 2000. The cellulase encoded by the native plasmid of Clavibacter michiganensis ssp. sepedonicus plays a role in virulence and contains an expansin-like domain. Physiol Mol Plant Pathol. 57: 221-233.
    • (2000) Physiol Mol Plant Pathol. , vol.57 , pp. 221-233
    • Laine, M.J.1    Haapalainen, M.2    Wahlroos, T.3    Kankare, K.4    Nissinen, R.5    Kassuwi, S.6    Metzler, M.C.7
  • 30
    • 77956043498 scopus 로고    scopus 로고
    • An expansin-like protein from Hahella chejuensis binds cellulose and enhances cellulase activity
    • Lee HJ, Lee S, Ko HJ, Kim KH, Choi IG. 2010. An expansin-like protein from Hahella chejuensis binds cellulose and enhances cellulase activity. Mol Cells. 29:379-385.
    • (2010) Mol Cells. , vol.29 , pp. 379-385
    • Lee, H.J.1    Lee, S.2    Ko, H.J.3    Kim, K.H.4    Choi, I.G.5
  • 33
    • 0000629753 scopus 로고
    • An oat coleoptile wall protein that induces wall extension in vitro and that is antigenically related to a similar protein from cucumber hypocotyls
    • Li Z-C, Durachko DM, Cosgrove DJ. 1993. An oat coleoptile wall protein that induces wall extension in vitro and that is antigenically related to a similar protein from cucumber hypocotyls. Planta 191: 349-356
    • (1993) Planta , vol.191 , pp. 349-356
    • Li, Z.-C.1    Durachko, D.M.2    Cosgrove, D.J.3
  • 34
    • 0026955916 scopus 로고
    • Two endogenous proteins that induce cell wall extension in plants
    • McQueen-Mason S, Durachko DM, Cosgrove DJ. 1992. Two endogenous proteins that induce cell wall extension in plants. Plant Cell 4: 1425-1433.
    • (1992) Plant Cell , vol.4 , pp. 1425-1433
    • McQueen-Mason, S.1    Durachko, D.M.2    Cosgrove, D.J.3
  • 35
    • 9144239489 scopus 로고    scopus 로고
    • Plant genetics: Gene transfer from parasitic to host plants
    • Mower JP, Stefanovic S, Young GJ, Palmer JD. 2004. Plant genetics: gene transfer from parasitic to host plants. Nature 432:165-166.
    • (2004) Nature , vol.432 , pp. 165-166
    • Mower, J.P.1    Stefanovic, S.2    Young, G.J.3    Palmer, J.D.4
  • 36
    • 54049133380 scopus 로고    scopus 로고
    • Adaptive eukaryote-toeukaryote lateral gene transfer: Stress-related genes of algal origin in the closest unicellular relatives of animals
    • Nedelcu AM, Miles IH, Fagir AM, Karol K. 2008. Adaptive eukaryote-toeukaryote lateral gene transfer: stress-related genes of algal origin in the closest unicellular relatives of animals. J Evol Biol. 21: 1852-1860.
    • (2008) J Evol Biol. , vol.21 , pp. 1852-1860
    • Nedelcu, A.M.1    Miles, I.H.2    Fagir, A.M.3    Karol, K.4
  • 37
    • 84861987330 scopus 로고    scopus 로고
    • Ancient gene transfer from algae to animals: Mechanisms and evolutionary significance
    • Ni T, Yue J, Sun G, Zou Y, Wen J, Huang J. 2012. Ancient gene transfer from algae to animals: mechanisms and evolutionary significance. BMC Evol Biol. 12:83.
    • (2012) BMC Evol Biol. , vol.12 , pp. 83
    • Ni, T.1    Yue, J.2    Sun, G.3    Zou, Y.4    Wen, J.5    Huang, J.6
  • 38
    • 60349109770 scopus 로고    scopus 로고
    • Role of an expansin-like molecule in Dictyostelium morphogenesis and regulation of its gene expression by the signal transducer and activator of transcription protein Dd-STATa
    • Ogasawara S, Shimada N, Kawata T. 2009. Role of an expansin-like molecule in Dictyostelium morphogenesis and regulation of its gene expression by the signal transducer and activator of transcription protein Dd-STATa. Dev Growth Differ. 51:109-122.
    • (2009) Dev Growth Differ. , vol.51 , pp. 109-122
    • Ogasawara, S.1    Shimada, N.2    Kawata, T.3
  • 39
    • 69949175105 scopus 로고    scopus 로고
    • Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi
    • Richards TA, Soanes DM, Foster PG, Leonard G, Thornton CR, Talbot NJ. 2009. Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi. Plant Cell 21:1897-1911.
    • (2009) Plant Cell , vol.21 , pp. 1897-1911
    • Richards, T.A.1    Soanes, D.M.2    Foster, P.G.3    Leonard, G.4    Thornton, C.R.5    Talbot, N.J.6
  • 40
    • 33845904639 scopus 로고    scopus 로고
    • Horizontal gene transfer in plants
    • Richardson AO, Palmer JD. 2007. Horizontal gene transfer in plants. J Exp Bot. 58:1-9.
    • (2007) J Exp Bot. , vol.58 , pp. 1-9
    • Richardson, A.O.1    Palmer, J.D.2
  • 41
    • 34447642004 scopus 로고    scopus 로고
    • Horizontal transfer of a eukaryotic plastid-targeted protein gene to cyanobacteria
    • Rogers MB, Patron NJ, Keeling PJ. 2007. Horizontal transfer of a eukaryotic plastid-targeted protein gene to cyanobacteria. BMC Biol. 5:26.
    • (2007) BMC Biol. , vol.5 , pp. 26
    • Rogers, M.B.1    Patron, N.J.2    Keeling, P.J.3
  • 42
    • 32944468574 scopus 로고    scopus 로고
    • Genome histories clarify evolution of the expansin superfamily: New insights from the poplar genome and pine ESTs
    • Sampedro J, Carey RE, Cosgrove DJ. 2006. Genome histories clarify evolution of the expansin superfamily: new insights from the poplar genome and pine ESTs. J Plant Res. 119:11-21.
    • (2006) J Plant Res. , vol.119 , pp. 11-21
    • Sampedro, J.1    Carey, R.E.2    Cosgrove, D.J.3
  • 44
    • 0029027867 scopus 로고
    • Molecular cloning and sequence analysis of expansins-A highly conserved, multigene family of proteins that mediate cell wall extension in plants
    • Shcherban TY, Shi J, Durachko DM, Guiltinan MJ, McQueen-Mason SJ, Shieh M, Cosgrove DJ. 1995. Molecular cloning and sequence analysis of expansins-a highly conserved, multigene family of proteins that mediate cell wall extension in plants. Proc Natl Acad Sci USA. 92:9245-9249.
    • (1995) Proc Natl Acad Sci USA. , vol.92 , pp. 9245-9249
    • Shcherban, T.Y.1    Shi, J.2    Durachko, D.M.3    Guiltinan, M.J.4    McQueen-Mason, S.J.5    Shieh, M.6    Cosgrove, D.J.7
  • 45
    • 13144267704 scopus 로고    scopus 로고
    • Endogenous cellulases in animals: Isolation of beta-1, 4-endoglucanase genes from two species of plant-parasitic cyst nematodes
    • (13 co-authors)
    • Smant G, Stokkermans JP, Yan Y, et al. (13 co-authors). 1998. Endogenous cellulases in animals: isolation of beta-1, 4-endoglucanase genes from two species of plant-parasitic cyst nematodes. Proc Natl Acad Sci USA. 95:4906-4911.
    • (1998) Proc Natl Acad Sci USA. , vol.95 , pp. 4906-4911
    • Smant, G.1    Stokkermans, J.P.2    Yan, Y.3
  • 46
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731-2739.
    • (2011) Mol Biol Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 47
    • 80053174611 scopus 로고    scopus 로고
    • Transcriptional analysis of cell growth and morphogenesis in the unicellular green alga Micrasterias (Streptophyta), with emphasis on the role of expansin
    • (12 co-authors)
    • Vannerum K, Huysman MJ, De Rycke R, et al. (12 co-authors). 2011. Transcriptional analysis of cell growth and morphogenesis in the unicellular green alga Micrasterias (Streptophyta), with emphasis on the role of expansin. BMC Plant Biol. 11:128.
    • (2011) BMC Plant Biol. , vol.11 , pp. 128
    • Vannerum, K.1    Huysman, M.J.2    De Rycke, R.3
  • 49
    • 0141591517 scopus 로고    scopus 로고
    • Horizontal gene transfer from flowering plants to Gnetum
    • Won H, Renner SS. 2003. Horizontal gene transfer from flowering plants to Gnetum. Proc Natl Acad Sci USA. 100:10824-10829.
    • (2003) Proc Natl Acad Sci USA. , vol.100 , pp. 10824-10829
    • Won, H.1    Renner, S.S.2
  • 52
    • 33749536575 scopus 로고    scopus 로고
    • Crystal structure and activities of EXPB1 (Zea m 1), a beta-expansin and group-1 pollen allergen from maize
    • Yennawar NH, Li LC, Dudzinski DM, Tabuchi A, Cosgrove DJ. 2006. Crystal structure and activities of EXPB1 (Zea m 1), a beta-expansin and group-1 pollen allergen from maize. Proc Natl Acad Sci USA. 103:14664-14671.
    • (2006) Proc Natl Acad Sci USA. , vol.103 , pp. 14664-14671
    • Yennawar, N.H.1    Li, L.C.2    Dudzinski, D.M.3    Tabuchi, A.4    Cosgrove, D.J.5
  • 53
    • 77953003221 scopus 로고    scopus 로고
    • Horizontal gene transfer by the parasitic plant Striga hermonthica
    • Yoshida S, Maruyama S, Nozaki H, Shirasu K. 2010. Horizontal gene transfer by the parasitic plant Striga hermonthica. Science 328:1128.
    • (2010) Science , vol.328 , pp. 1128
    • Yoshida, S.1    Maruyama, S.2    Nozaki, H.3    Shirasu, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.