-
1
-
-
80053359585
-
The genome of the green anole lizard and a comparative analysis with birds and mammals
-
Alföldi J, Di Palma F, Grabherr M et al. (2011) The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature, 477, 587–591.
-
(2011)
Nature
, vol.477
, pp. 587-591
-
-
Alföldi, J.1
Di Palma, F.2
Grabherr, M.3
-
2
-
-
84857551173
-
Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity
-
Andersen EC, Gerke JP, Shapiro JA et al. (2012) Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity. Nature Genetics, 44, 285–290.
-
(2012)
Nature Genetics
, vol.44
, pp. 285-290
-
-
Andersen, E.C.1
Gerke, J.P.2
Shapiro, J.A.3
-
3
-
-
4544348578
-
Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers
-
Anderson PK, Cunningham AA, Patel NG et al. (2004) Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers. Trends in Ecology & Evolution, 19, 535–544.
-
(2004)
Trends in Ecology & Evolution
, vol.19
, pp. 535-544
-
-
Anderson, P.K.1
Cunningham, A.A.2
Patel, N.G.3
-
4
-
-
84905276956
-
Parasitic castration promotes coevolutionary cycling but also imposes a cost on sex
-
Ashby B, Gupta S (2014) Parasitic castration promotes coevolutionary cycling but also imposes a cost on sex. Evolution; International Journal of Organic Evolution, 68, 2234–2244.
-
(2014)
Evolution; International Journal of Organic Evolution
, vol.68
, pp. 2234-2244
-
-
Ashby, B.1
Gupta, S.2
-
5
-
-
34547617172
-
Recombination rate estimation in the presence of hotspots
-
Auton A, McVean G (2007) Recombination rate estimation in the presence of hotspots. Genome Research, 17, 1219–1227.
-
(2007)
Genome Research
, vol.17
, pp. 1219-1227
-
-
Auton, A.1
McVean, G.2
-
6
-
-
84939453825
-
Chaos of rearrangements in the mating-type chromosomes of the anther-smut fungus Microbotryum lychnidis-dioicae
-
Badouin H, Hood ME, Gouzy J et al. (2015) Chaos of rearrangements in the mating-type chromosomes of the anther-smut fungus Microbotryum lychnidis-dioicae. Genetics, 200, 1275–1284.
-
(2015)
Genetics
, vol.200
, pp. 1275-1284
-
-
Badouin, H.1
Hood, M.E.2
Gouzy, J.3
-
7
-
-
79958151996
-
BamTools: a C++ API and toolkit for analyzing and managing BAM files
-
Barnett DW, Garrison EK, Quinlan AR, Strömberg MP, Marth GT (2011) BamTools: a C++ API and toolkit for analyzing and managing BAM files. Bioinformatics, 27, 1691–1692.
-
(2011)
Bioinformatics
, vol.27
, pp. 1691-1692
-
-
Barnett, D.W.1
Garrison, E.K.2
Quinlan, A.R.3
Strömberg, M.P.4
Marth, G.T.5
-
8
-
-
68149120587
-
Silene as a model system in ecology and evolution
-
Bernasconi G, Antonovics J, Biere A et al. (2009) Silene as a model system in ecology and evolution. Heredity, 103, 5–14.
-
(2009)
Heredity
, vol.103
, pp. 5-14
-
-
Bernasconi, G.1
Antonovics, J.2
Biere, A.3
-
9
-
-
79955577378
-
The coupling hypothesis: why genome scans may fail to map local adaptation genes
-
Bierne N, Welch J, Loire E, Bonhomme F, David P (2011) The coupling hypothesis: why genome scans may fail to map local adaptation genes. Molecular Ecology, 20, 2044–2072.
-
(2011)
Molecular Ecology
, vol.20
, pp. 2044-2072
-
-
Bierne, N.1
Welch, J.2
Loire, E.3
Bonhomme, F.4
David, P.5
-
10
-
-
84965134822
-
Genomic signature of selective sweeps illuminates adaptation of Medicago truncatula to root-associated microorganisms
-
Bonhomme M, Boitard S, Clemente HS et al. (2015) Genomic signature of selective sweeps illuminates adaptation of Medicago truncatula to root-associated microorganisms. Molecular Biology and Evolution, 32, 2097–2110.
-
(2015)
Molecular Biology and Evolution
, vol.32
, pp. 2097-2110
-
-
Bonhomme, M.1
Boitard, S.2
Clemente, H.S.3
-
11
-
-
84996538942
-
Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes
-
Branco S, Bi K, Liao HL et al. (2017) Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes. Molecular Ecology, 26, 2063–2076.
-
(2017)
Molecular Ecology
, vol.26
, pp. 2063-2076
-
-
Branco, S.1
Bi, K.2
Liao, H.L.3
-
12
-
-
84946553571
-
Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
-
Burri R, Nater A, Kawakami T et al. (2015) Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers. Genome Research, 25, 1656–1665.
-
(2015)
Genome Research
, vol.25
, pp. 1656-1665
-
-
Burri, R.1
Nater, A.2
Kawakami, T.3
-
13
-
-
0030728110
-
Anther-smut disease in Silene dioica: variation in susceptibility among genotypes and populations, and patterns of disease within populations
-
Carlsson-Granér U (1997) Anther-smut disease in Silene dioica: variation in susceptibility among genotypes and populations, and patterns of disease within populations. Evolution, 51, 1416–1426.
-
(1997)
Evolution
, vol.51
, pp. 1416-1426
-
-
Carlsson-Granér, U.1
-
14
-
-
1642514950
-
Pattern of diversity in the genomic region near the maize domestication gene tb1
-
Clark RM, Linton E, Messing J, Doebley JF (2004) Pattern of diversity in the genomic region near the maize domestication gene tb1. Proceedings of the National Academy of Sciences of the United States of America, 101, 700–707.
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, pp. 700-707
-
-
Clark, R.M.1
Linton, E.2
Messing, J.3
Doebley, J.F.4
-
15
-
-
84946900562
-
The impact of recombination hotspots on genome evolution of a fungal plant pathogen
-
Croll D, Lendenmann MH, Stewart E, McDonald BA (2015) The impact of recombination hotspots on genome evolution of a fungal plant pathogen. Genetics, 201, 1213–1228.
-
(2015)
Genetics
, vol.201
, pp. 1213-1228
-
-
Croll, D.1
Lendenmann, M.H.2
Stewart, E.3
McDonald, B.A.4
-
16
-
-
0038305577
-
Selection at linked sites in the partial selfer Caenorhabditis elegans
-
Cutter AD, Payseur BA (2003) Selection at linked sites in the partial selfer Caenorhabditis elegans. Molecular Biology and Evolution, 20, 665–673.
-
(2003)
Molecular Biology and Evolution
, vol.20
, pp. 665-673
-
-
Cutter, A.D.1
Payseur, B.A.2
-
17
-
-
70350236484
-
Biased gene conversion and the evolution of mammalian genomic landscapes
-
Duret L, Galtier N (2009) Biased gene conversion and the evolution of mammalian genomic landscapes. Annual Review of Genomics and Human Genetics, 10, 285–311.
-
(2009)
Annual Review of Genomics and Human Genetics
, vol.10
, pp. 285-311
-
-
Duret, L.1
Galtier, N.2
-
18
-
-
33751511707
-
A new perspective on isochore evolution
-
Duret L, Eyre-Walker A, Galtier N (2006) A new perspective on isochore evolution. Gene, 385, 71–74.
-
(2006)
Gene
, vol.385
, pp. 71-74
-
-
Duret, L.1
Eyre-Walker, A.2
Galtier, N.3
-
20
-
-
77955381733
-
MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus
-
Ewing G, Hermisson J (2010) MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus. Bioinformatics, 26, 2064–2065.
-
(2010)
Bioinformatics
, vol.26
, pp. 2064-2065
-
-
Ewing, G.1
Hermisson, J.2
-
21
-
-
84866943611
-
Copper at the front line of the host-pathogen battle
-
Festa RA, Thiele DJ (2012) Copper at the front line of the host-pathogen battle. PLoS Pathogens, 8, e1002887.
-
(2012)
PLoS Pathogens
, vol.8
-
-
Festa, R.A.1
Thiele, D.J.2
-
22
-
-
84983002252
-
Strong phylogeographic co-structure between the anther-smut fungus and its white campion host
-
Feurtey A, Gladieux P, Hood ME et al. (2016) Strong phylogeographic co-structure between the anther-smut fungus and its white campion host. The New Phytologist, 212, 668–679.
-
(2016)
The New Phytologist
, vol.212
, pp. 668-679
-
-
Feurtey, A.1
Gladieux, P.2
Hood, M.E.3
-
23
-
-
84924992957
-
Degeneration of the nonrecombining regions in the mating-type chromosomes of the anther-smut fungi
-
Fontanillas E, Hood ME, Badouin H et al. (2015) Degeneration of the nonrecombining regions in the mating-type chromosomes of the anther-smut fungi. Molecular Biology and Evolution, 32, 928–943.
-
(2015)
Molecular Biology and Evolution
, vol.32
, pp. 928-943
-
-
Fontanillas, E.1
Hood, M.E.2
Badouin, H.3
-
25
-
-
84861698308
-
Sibling competition arena: selfing and a competition arena can combine to constitute a barrier to gene flow in sympatry
-
Gibson AK, Hood ME, Giraud T (2012) Sibling competition arena: selfing and a competition arena can combine to constitute a barrier to gene flow in sympatry. Evolution; International Journal of Organic Evolution, 66, 1917–1930.
-
(2012)
Evolution; International Journal of Organic Evolution
, vol.66
, pp. 1917-1930
-
-
Gibson, A.K.1
Hood, M.E.2
Giraud, T.3
-
26
-
-
84902989795
-
Performance of a hybrid fungal pathogen on pure-species and hybrid host plants
-
Gibson AK, Refrégier G, Hood Michael E, Giraud T (2014) Performance of a hybrid fungal pathogen on pure-species and hybrid host plants. International Journal of Plant Sciences, 175, 724–730.
-
(2014)
International Journal of Plant Sciences
, vol.175
, pp. 724-730
-
-
Gibson, A.K.1
Refrégier, G.2
Hood Michael, E.3
Giraud, T.4
-
27
-
-
21244484650
-
Selfing propensity under choice conditions in a parasitic fungus, Microbotryum violaceum, and parameters influencing infection success in artificial inoculations
-
Giraud T, Odile J, Shykoff JA (2005) Selfing propensity under choice conditions in a parasitic fungus, Microbotryum violaceum, and parameters influencing infection success in artificial inoculations. International Journal of Plant Sciences, 166, 649–657.
-
(2005)
International Journal of Plant Sciences
, vol.166
, pp. 649-657
-
-
Giraud, T.1
Odile, J.2
Shykoff, J.A.3
-
28
-
-
47049093932
-
Mating system of the anther smut fungus Microbotryum violaceum: selfing under heterothallism
-
Giraud T, Yockteng R, López-Villavicencio M, Refrégier G, Hood ME (2008a) Mating system of the anther smut fungus Microbotryum violaceum: selfing under heterothallism. Eukaryotic Cell, 7, 765–775.
-
(2008)
Eukaryotic Cell
, vol.7
, pp. 765-775
-
-
Giraud, T.1
Yockteng, R.2
López-Villavicencio, M.3
Refrégier, G.4
Hood, M.E.5
-
29
-
-
38949175704
-
Isolation of 60 polymorphic microsatellite loci in EST libraries of four sibling species of the phytopathogenic fungal complex Microbotryum
-
Giraud T, Yockteng R, Marthey S et al. (2008b) Isolation of 60 polymorphic microsatellite loci in EST libraries of four sibling species of the phytopathogenic fungal complex Microbotryum. Molecular Ecology Resources, 8, 387–392.
-
(2008)
Molecular Ecology Resources
, vol.8
, pp. 387-392
-
-
Giraud, T.1
Yockteng, R.2
Marthey, S.3
-
30
-
-
77954815758
-
Linking the emergence of fungal plant diseases with ecological speciation
-
Giraud T, Gladieux P, Gavrilets S (2010) Linking the emergence of fungal plant diseases with ecological speciation. Trends in Ecology & Evolution, 25, 387–395.
-
(2010)
Trends in Ecology & Evolution
, vol.25
, pp. 387-395
-
-
Giraud, T.1
Gladieux, P.2
Gavrilets, S.3
-
31
-
-
78650492295
-
Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact
-
Gladieux P, Vercken E, Fontaine MC et al. (2011) Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact. Molecular Biology and Evolution, 28, 459–471.
-
(2011)
Molecular Biology and Evolution
, vol.28
, pp. 459-471
-
-
Gladieux, P.1
Vercken, E.2
Fontaine, M.C.3
-
32
-
-
84895008374
-
Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes
-
Gladieux P, Ropars J, Badouin H et al. (2014) Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes. Molecular Ecology, 23, 753–773.
-
(2014)
Molecular Ecology
, vol.23
, pp. 753-773
-
-
Gladieux, P.1
Ropars, J.2
Badouin, H.3
-
33
-
-
84903440684
-
GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis
-
Glémin S, Clément Y, David J, Ressayre A (2014) GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis. Trends in Genetics, 30, 263–270.
-
(2014)
Trends in Genetics
, vol.30
, pp. 263-270
-
-
Glémin, S.1
Clément, Y.2
David, J.3
Ressayre, A.4
-
34
-
-
77954969511
-
Genome wide analyses reveal little evidence for adaptive evolution in many plant species
-
Gossmann TI, Song B-H, Windsor AJ et al. (2010) Genome wide analyses reveal little evidence for adaptive evolution in many plant species. Molecular Biology and Evolution, 27, 1822–1832.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 1822-1832
-
-
Gossmann, T.I.1
Song, B.-H.2
Windsor, A.J.3
-
35
-
-
0030618285
-
Maintenance of the species boundary between Silene dioica and S. latifolia (red and white Campion)
-
Goulson D, Jerrim K (1997) Maintenance of the species boundary between Silene dioica and S. latifolia (red and white Campion). Oikos, 79, 115–126.
-
(1997)
Oikos
, vol.79
, pp. 115-126
-
-
Goulson, D.1
Jerrim, K.2
-
36
-
-
84869043759
-
Limited evidence for classic selective sweeps in African populations
-
Granka JM, Henn BM, Gignoux CR et al. (2012) Limited evidence for classic selective sweeps in African populations. Genetics, 192, 1049–1064.
-
(2012)
Genetics
, vol.192
, pp. 1049-1064
-
-
Granka, J.M.1
Henn, B.M.2
Gignoux, C.R.3
-
37
-
-
73449149044
-
Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data
-
Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD (2009) Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genetics, 5, e1000695.
-
(2009)
PLoS Genetics
, vol.5
-
-
Gutenkunst, R.N.1
Hernandez, R.D.2
Williamson, S.H.3
Bustamante, C.D.4
-
38
-
-
84954078379
-
Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication
-
Haasl RJ, Payseur BA (2016) Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication. Molecular Ecology, 25, 5–23.
-
(2016)
Molecular Ecology
, vol.25
, pp. 5-23
-
-
Haasl, R.J.1
Payseur, B.A.2
-
39
-
-
80053587873
-
Adaptation to climate across the Arabidopsis thaliana genome
-
Hancock AM, Brachi B, Faure N et al. (2011) Adaptation to climate across the Arabidopsis thaliana genome. Science, 334, 83–86.
-
(2011)
Science
, vol.334
, pp. 83-86
-
-
Hancock, A.M.1
Brachi, B.2
Faure, N.3
-
40
-
-
79951829399
-
Classic selective sweeps were rare in recent human evolution
-
Hernandez RD, Kelley JL, Elyashiv E et al. (2011) Classic selective sweeps were rare in recent human evolution. Science, 331, 920–924.
-
(2011)
Science
, vol.331
, pp. 920-924
-
-
Hernandez, R.D.1
Kelley, J.L.2
Elyashiv, E.3
-
42
-
-
0023959349
-
Variances and covariances of squared linkage disequilibria in finite populations
-
Hill WG, Weir BS (1988) Variances and covariances of squared linkage disequilibria in finite populations. Theoretical Population Biology, 33, 54–78.
-
(1988)
Theoretical Population Biology
, vol.33
, pp. 54-78
-
-
Hill, W.G.1
Weir, B.S.2
-
43
-
-
0036185923
-
Dimorphic mating-type chromosomes in the fungus Microbotryum violaceum
-
Hood ME (2002) Dimorphic mating-type chromosomes in the fungus Microbotryum violaceum. Genetics, 160, 457–461.
-
(2002)
Genetics
, vol.160
, pp. 457-461
-
-
Hood, M.E.1
-
44
-
-
2442511086
-
Mating within the meiotic tetrad and the maintenance of genomic heterozygosity
-
Hood ME, Antonovics J (2004) Mating within the meiotic tetrad and the maintenance of genomic heterozygosity. Genetics, 166, 1751–1759.
-
(2004)
Genetics
, vol.166
, pp. 1751-1759
-
-
Hood, M.E.1
Antonovics, J.2
-
45
-
-
77954611699
-
Distribution of the anther-smut pathogen Microbotryum on species of the Caryophyllaceae
-
Hood ME, Mena-Alí JI, Gibson AK et al. (2010) Distribution of the anther-smut pathogen Microbotryum on species of the Caryophyllaceae. The New Phytologist, 187, 217–229.
-
(2010)
The New Phytologist
, vol.187
, pp. 217-229
-
-
Hood, M.E.1
Mena-Alí, J.I.2
Gibson, A.K.3
-
46
-
-
84871792113
-
Extensive divergence between mating-type chromosomes of the anther-smut fungus
-
Hood ME, Petit E, Giraud T (2013) Extensive divergence between mating-type chromosomes of the anther-smut fungus. Genetics, 193, 309–315.
-
(2013)
Genetics
, vol.193
, pp. 309-315
-
-
Hood, M.E.1
Petit, E.2
Giraud, T.3
-
47
-
-
84910671594
-
Keeping it local: evidence for positive selection in Swedish Arabidopsis thaliana
-
Huber CD, Nordborg M, Hermisson J, Hellmann I (2014) Keeping it local: evidence for positive selection in Swedish Arabidopsis thaliana. Molecular Biology and Evolution, 31, 3026–3039.
-
(2014)
Molecular Biology and Evolution
, vol.31
, pp. 3026-3039
-
-
Huber, C.D.1
Nordborg, M.2
Hermisson, J.3
Hellmann, I.4
-
48
-
-
0026709389
-
Estimation of levels of gene flow from DNA sequence data
-
Hudson RR, Slatkin M, Maddison WP (1992) Estimation of levels of gene flow from DNA sequence data. Genetics, 132, 583–589.
-
(1992)
Genetics
, vol.132
, pp. 583-589
-
-
Hudson, R.R.1
Slatkin, M.2
Maddison, W.P.3
-
49
-
-
44349095887
-
adegenet: a R package for the multivariate analysis of genetic markers
-
Jombart T (2008) adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics, 24, 1403–1405.
-
(2008)
Bioinformatics
, vol.24
, pp. 1403-1405
-
-
Jombart, T.1
-
50
-
-
84883816471
-
Diversity of lactase persistence alleles in Ethiopia: signature of a soft selective sweep
-
Jones BL, Raga TO, Liebert A et al. (2013) Diversity of lactase persistence alleles in Ethiopia: signature of a soft selective sweep. American Journal of Human Genetics, 93, 538–544.
-
(2013)
American Journal of Human Genetics
, vol.93
, pp. 538-544
-
-
Jones, B.L.1
Raga, T.O.2
Liebert, A.3
-
51
-
-
2142657817
-
A combined transmembrane topology and signal peptide prediction method
-
Käll L, Krogh A, Sonnhammer ELL (2004) A combined transmembrane topology and signal peptide prediction method. Journal of Molecular Biology, 338, 1027–1036.
-
(2004)
Journal of Molecular Biology
, vol.338
, pp. 1027-1036
-
-
Käll, L.1
Krogh, A.2
Sonnhammer, E.L.L.3
-
52
-
-
0032965635
-
Local maladaptation in the anther-smut fungus Microbotryum violaceum to its host plant Silene latifolia: evidence from a cross-inoculation experiment
-
Kaltz O, Gandon S, Michalakis Y, Shykoff JA (1999) Local maladaptation in the anther-smut fungus Microbotryum violaceum to its host plant Silene latifolia: evidence from a cross-inoculation experiment. Evolution, 53, 395–407.
-
(1999)
Evolution
, vol.53
, pp. 395-407
-
-
Kaltz, O.1
Gandon, S.2
Michalakis, Y.3
Shykoff, J.A.4
-
53
-
-
62149118305
-
Selection at a single locus leads to widespread expansion of Toxoplasma gondii lineages that are virulent in mice
-
Khan A, Taylor S, Ajioka JW, Rosenthal BM, Sibley LD (2009) Selection at a single locus leads to widespread expansion of Toxoplasma gondii lineages that are virulent in mice. PLoS Genetics, 5, e1000404.
-
(2009)
PLoS Genetics
, vol.5
-
-
Khan, A.1
Taylor, S.2
Ajioka, J.W.3
Rosenthal, B.M.4
Sibley, L.D.5
-
54
-
-
84863229597
-
VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing
-
Koboldt DC, Zhang Q, Larson DE et al. (2012) VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Research, 22, 568–576.
-
(2012)
Genome Research
, vol.22
, pp. 568-576
-
-
Koboldt, D.C.1
Zhang, Q.2
Larson, D.E.3
-
55
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
-
Krogh A, Larsson B, von Heijne G, Sonnhammer EL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. Journal of Molecular Biology, 305, 567–580.
-
(2001)
Journal of Molecular Biology
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.4
-
56
-
-
69649109364
-
Circos: an information aesthetic for comparative genomics
-
Krzywinski MI, Schein JE, Birol I et al. (2009) Circos: an information aesthetic for comparative genomics. Genome Research, 19, 1639–1645.
-
(2009)
Genome Research
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.I.1
Schein, J.E.2
Birol, I.3
-
57
-
-
27944509040
-
Novel G-protein-coupled receptor-like proteins in the plant pathogenic fungus Magnaporthe grisea
-
Kulkarni RD, Thon MR, Pan H, Dean RA (2005) Novel G-protein-coupled receptor-like proteins in the plant pathogenic fungus Magnaporthe grisea. Genome Biology, 6, R24.
-
(2005)
Genome Biology
, vol.6
, pp. R24
-
-
Kulkarni, R.D.1
Thon, M.R.2
Pan, H.3
Dean, R.A.4
-
58
-
-
29144485743
-
SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans
-
Lamason RL, Mohideen M-APK, Mest JR et al. (2005) SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans. Science, 310, 1782–1786.
-
(2005)
Science
, vol.310
, pp. 1782-1786
-
-
Lamason, R.L.1
Mohideen, M.-A.P.K.2
Mest, J.R.3
-
59
-
-
34347358478
-
Evolution of reproductive isolation within a parasitic fungal species complex
-
Le Gac M, Hood ME, Giraud T (2007) Evolution of reproductive isolation within a parasitic fungal species complex. Evolution, 61, 1781–1787.
-
(2007)
Evolution
, vol.61
, pp. 1781-1787
-
-
Le Gac, M.1
Hood, M.E.2
Giraud, T.3
-
60
-
-
84877771672
-
GC-Biased gene conversion in yeast is specifically associated with crossovers: molecular mechanisms and evolutionary significance
-
Lesecque Y, Mouchiroud D, Duret L (2013) GC-Biased gene conversion in yeast is specifically associated with crossovers: molecular mechanisms and evolutionary significance. Molecular Biology and Evolution, 30, 1409–1419.
-
(2013)
Molecular Biology and Evolution
, vol.30
, pp. 1409-1419
-
-
Lesecque, Y.1
Mouchiroud, D.2
Duret, L.3
-
61
-
-
15044339288
-
2-producing glyoxal oxidase is required for filamentous growth and pathogenicity in Ustilago maydis
-
2-producing glyoxal oxidase is required for filamentous growth and pathogenicity in Ustilago maydis. Molecular Genetics and Genomics, 272, 639–650.
-
(2005)
Molecular Genetics and Genomics
, vol.272
, pp. 639-650
-
-
Leuthner, B.1
Aichinger, C.2
Oehmen, E.3
-
62
-
-
84881026985
-
Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
-
Long Q, Rabanal FA, Meng D et al. (2013) Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nature Genetics, 45, 884–890.
-
(2013)
Nature Genetics
, vol.45
, pp. 884-890
-
-
Long, Q.1
Rabanal, F.A.2
Meng, D.3
-
63
-
-
37349021695
-
Multiple infections by the anther smut pathogen are frequent and involve related strains
-
López-Villavicencio M, Jonot O, Coantic A et al. (2007) Multiple infections by the anther smut pathogen are frequent and involve related strains. PLoS Pathogens, 3, e176.
-
(2007)
PLoS Pathogens
, vol.3
-
-
López-Villavicencio, M.1
Jonot, O.2
Coantic, A.3
-
64
-
-
84938838965
-
A Phytophthora sojae glycoside hydrolase 12 protein is a major virulence factor during soybean infection and is recognized as a PAMP
-
Ma Z, Song T, Zhu L et al. (2015) A Phytophthora sojae glycoside hydrolase 12 protein is a major virulence factor during soybean infection and is recognized as a PAMP. The Plant Cell, 27, 2057–2072.
-
(2015)
The Plant Cell
, vol.27
, pp. 2057-2072
-
-
Ma, Z.1
Song, T.2
Zhu, L.3
-
65
-
-
85027951521
-
Chromosomal patterns of diversity and differentiation in creepers: a next-gen phylogeographic investigation of Certhia americana
-
Manthey JD, Klicka J, Spellman GM (2015) Chromosomal patterns of diversity and differentiation in creepers: a next-gen phylogeographic investigation of Certhia americana. Heredity, 115, 165–172.
-
(2015)
Heredity
, vol.115
, pp. 165-172
-
-
Manthey, J.D.1
Klicka, J.2
Spellman, G.M.3
-
66
-
-
0038543069
-
Biased gene conversion: implications for genome and sex evolution
-
Marais G (2003) Biased gene conversion: implications for genome and sex evolution. Trends in Genetics, 19, 330–338.
-
(2003)
Trends in Genetics
, vol.19
, pp. 330-338
-
-
Marais, G.1
-
67
-
-
84859499806
-
EggLib: processing, analysis and simulation tools for population genetics and genomics
-
Mita SD, Siol M (2012) EggLib: processing, analysis and simulation tools for population genetics and genomics. BMC Genetics, 13, 27.
-
(2012)
BMC Genetics
, vol.13
, pp. 27
-
-
Mita, S.D.1
Siol, M.2
-
69
-
-
10744222802
-
A selective sweep driven by pyrimethamine treatment in Southeast Asian malaria parasites
-
Nair S, Williams JT, Brockman A et al. (2003) A selective sweep driven by pyrimethamine treatment in Southeast Asian malaria parasites. Molecular Biology and Evolution, 20, 1526–1536.
-
(2003)
Molecular Biology and Evolution
, vol.20
, pp. 1526-1536
-
-
Nair, S.1
Williams, J.T.2
Brockman, A.3
-
70
-
-
77954241323
-
Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control
-
Neafsey DE, Barker BM, Sharpton TJ et al. (2010) Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control. Genome Research, 20, 938–946.
-
(2010)
Genome Research
, vol.20
, pp. 938-946
-
-
Neafsey, D.E.1
Barker, B.M.2
Sharpton, T.J.3
-
71
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Molecular Biology and Evolution, 3, 418–426.
-
(1986)
Molecular Biology and Evolution
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
72
-
-
27544437635
-
Genomic scans for selective sweeps using SNP data
-
Nielsen R, Williamson S, Kim Y et al. (2005) Genomic scans for selective sweeps using SNP data. Genome Research, 15, 1566–1575.
-
(2005)
Genome Research
, vol.15
, pp. 1566-1575
-
-
Nielsen, R.1
Williamson, S.2
Kim, Y.3
-
73
-
-
22744434580
-
The pattern of polymorphism in Arabidopsis thaliana
-
Nordborg M, Hu TT, Ishino Y et al. (2005) The pattern of polymorphism in Arabidopsis thaliana. PLoS Biology, 3, e196.
-
(2005)
PLoS Biology
, vol.3
-
-
Nordborg, M.1
Hu, T.T.2
Ishino, Y.3
-
74
-
-
1042304216
-
APE: analyses of phylogenetics and evolution in R language
-
Paradis E, Claude J, Strimmer K (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289–290.
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
75
-
-
84883252048
-
SweeD: likelihood-based detection of selective sweeps in thousands of genomes
-
Pavlidis P, Živković D, Stamatakis A, Alachiotis N (2013) SweeD: likelihood-based detection of selective sweeps in thousands of genomes. Molecular Biology and Evolution, 30, 2224–2234.
-
(2013)
Molecular Biology and Evolution
, vol.30
, pp. 2224-2234
-
-
Pavlidis, P.1
Živković, D.2
Stamatakis, A.3
Alachiotis, N.4
-
77
-
-
84931267244
-
Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus
-
Perlin MH, Amselem J, Fontanillas E et al. (2015) Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus. BMC Genomics, 16, 461.
-
(2015)
BMC Genomics
, vol.16
, pp. 461
-
-
Perlin, M.H.1
Amselem, J.2
Fontanillas, E.3
-
78
-
-
80053345905
-
SignalP 4.0: discriminating signal peptides from transmembrane regions
-
Petersen TN, Brunak S, von Heijne G, Nielsen H (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nature Methods, 8, 785–786.
-
(2011)
Nature Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
80
-
-
34247598733
-
Host fidelity of the pollinator guilds of Silene dioica and Silene latifolia: possible consequences for sympatric host race differentiation of a vectored plant disease
-
van Putten WF, Elzinga Jelmer A, Biere A (2007) Host fidelity of the pollinator guilds of Silene dioica and Silene latifolia: possible consequences for sympatric host race differentiation of a vectored plant disease. International Journal of Plant Sciences, 168, 421–434.
-
(2007)
International Journal of Plant Sciences
, vol.168
, pp. 421-434
-
-
van Putten, W.F.1
Elzinga Jelmer, A.2
Biere, A.3
-
81
-
-
77951770756
-
BEDTools: a flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841–842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
83
-
-
84902485214
-
fastSTRUCTURE: variational inference of population structure in large SNP data sets
-
Raj A, Stephens M, Pritchard JK (2014) fastSTRUCTURE: variational inference of population structure in large SNP data sets. Genetics, 197, 573–589.
-
(2014)
Genetics
, vol.197
, pp. 573-589
-
-
Raj, A.1
Stephens, M.2
Pritchard, J.K.3
-
84
-
-
77957878154
-
No evidence of reproductive character displacement between two sister fungal species causing anther smut disease in Silene
-
Refrégier G, Hood ME, Giraud T (2010) No evidence of reproductive character displacement between two sister fungal species causing anther smut disease in Silene. International Journal of Plant Sciences, 171, 847–859.
-
(2010)
International Journal of Plant Sciences
, vol.171
, pp. 847-859
-
-
Refrégier, G.1
Hood, M.E.2
Giraud, T.3
-
85
-
-
84900500340
-
Characterization of genetic diversity in the nematode Pristionchus pacificus from population-scale resequencing data
-
Rödelsperger C, Neher RA, Weller AM et al. (2014) Characterization of genetic diversity in the nematode Pristionchus pacificus from population-scale resequencing data. Genetics, 196, 1153–1165.
-
(2014)
Genetics
, vol.196
, pp. 1153-1165
-
-
Rödelsperger, C.1
Neher, R.A.2
Weller, A.M.3
-
86
-
-
84875420788
-
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
-
Rouxel T, Grandaubert J, Hane JK et al. (2011) Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations. Nature Communications, 2, 202.
-
(2011)
Nature Communications
, vol.2
, pp. 202
-
-
Rouxel, T.1
Grandaubert, J.2
Hane, J.K.3
-
87
-
-
77950080740
-
Whole-genome resequencing reveals loci under selection during chicken domestication
-
Rubin C-J, Zody MC, Eriksson J et al. (2010) Whole-genome resequencing reveals loci under selection during chicken domestication. Nature, 464, 587–591.
-
(2010)
Nature
, vol.464
, pp. 587-591
-
-
Rubin, C.-J.1
Zody, M.C.2
Eriksson, J.3
-
89
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406–425.
-
(1987)
Molecular Biology and Evolution
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
90
-
-
79952263624
-
Pervasive adaptive protein evolution apparent in diversity patterns around amino acid substitutions in Drosophila simulans
-
Sattath S, Elyashiv E, Kolodny O, Rinott Y, Sella G (2011) Pervasive adaptive protein evolution apparent in diversity patterns around amino acid substitutions in Drosophila simulans. PLoS Genetics, 7, e1001302.
-
(2011)
PLoS Genetics
, vol.7
-
-
Sattath, S.1
Elyashiv, E.2
Kolodny, O.3
Rinott, Y.4
Sella, G.5
-
91
-
-
77954966377
-
Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size
-
Slotte T, Foxe JP, Hazzouri KM, Wright SI (2010) Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size. Molecular Biology and Evolution, 27, 1813–1821.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 1813-1821
-
-
Slotte, T.1
Foxe, J.P.2
Hazzouri, K.M.3
Wright, S.I.4
-
96
-
-
64749114678
-
Population genetics of fungal and oomycete effectors involved in gene-for-gene interactions
-
Stukenbrock EH, McDonald BA (2009) Population genetics of fungal and oomycete effectors involved in gene-for-gene interactions. Molecular Plant-Microbe Interactions, 22, 371–380.
-
(2009)
Molecular Plant-Microbe Interactions
, vol.22
, pp. 371-380
-
-
Stukenbrock, E.H.1
McDonald, B.A.2
-
97
-
-
67649324657
-
Recent strong positive selection on Drosophila melanogaster HDAC6, a gene encoding a stress surveillance factor, as revealed by population genomic analysis
-
Svetec N, Pavlidis P, Stephan W (2009) Recent strong positive selection on Drosophila melanogaster HDAC6, a gene encoding a stress surveillance factor, as revealed by population genomic analysis. Molecular Biology and Evolution, 26, 1549–1556.
-
(2009)
Molecular Biology and Evolution
, vol.26
, pp. 1549-1556
-
-
Svetec, N.1
Pavlidis, P.2
Stephan, W.3
-
98
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585–595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
99
-
-
84905230182
-
Speed of adaptation and genomic footprints of host–parasite coevolution under arms race and trench warfare dynamics
-
Tellier A, Moreno-Gámez S, Stephan W (2014) Speed of adaptation and genomic footprints of host–parasite coevolution under arms race and trench warfare dynamics. Evolution, 68, 2211–2224.
-
(2014)
Evolution
, vol.68
, pp. 2211-2224
-
-
Tellier, A.1
Moreno-Gámez, S.2
Stephan, W.3
-
100
-
-
0344464730
-
Libsequence: a C++ class library for evolutionary genetic analysis
-
Thornton K (2003) Libsequence: a C++ class library for evolutionary genetic analysis. Bioinformatics, 19, 2325–2327.
-
(2003)
Bioinformatics
, vol.19
, pp. 2325-2327
-
-
Thornton, K.1
-
102
-
-
84941645639
-
The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms
-
Tiley GP, Burleigh G (2015) The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms. BMC Evolutionary Biology, 15, 194.
-
(2015)
BMC Evolutionary Biology
, vol.15
, pp. 194
-
-
Tiley, G.P.1
Burleigh, G.2
-
103
-
-
84899102898
-
Whole genome sequencing of Ethiopian highlanders reveals conserved hypoxia tolerance genes
-
Udpa N, Ronen R, Zhou D et al. (2014) Whole genome sequencing of Ethiopian highlanders reveals conserved hypoxia tolerance genes. Genome Biology, 15, R36.
-
(2014)
Genome Biology
, vol.15
, pp. R36
-
-
Udpa, N.1
Ronen, R.2
Zhou, D.3
-
104
-
-
0038395923
-
Intraspecific competition and mating between fungal strains of the anther smut Microbotryum violaceum from the host plants Silene latifolia and S. dioica
-
Van Putten WF, Biere A, Van Damme JMM, May G (2003) Intraspecific competition and mating between fungal strains of the anther smut Microbotryum violaceum from the host plants Silene latifolia and S. dioica. Evolution, 57, 766–776.
-
(2003)
Evolution
, vol.57
, pp. 766-776
-
-
Van Putten, W.F.1
Biere, A.2
Van Damme, J.M.M.3
May, G.4
-
105
-
-
78650446432
-
Glacial refugia in pathogens: European genetic structure of anther smut pathogens on Silene latifolia and Silene dioica
-
Vercken E, Fontaine MC, Gladieux P et al. (2010) Glacial refugia in pathogens: European genetic structure of anther smut pathogens on Silene latifolia and Silene dioica. PLoS Pathogens, 6, e1001229.
-
(2010)
PLoS Pathogens
, vol.6
-
-
Vercken, E.1
Fontaine, M.C.2
Gladieux, P.3
-
106
-
-
62449145221
-
Hybrid sterility and inviability in the parasitic fungal species complex Microbotryum
-
de Vienne DM, Refrégier G, Hood ME et al. (2009) Hybrid sterility and inviability in the parasitic fungal species complex Microbotryum. Journal of Evolutionary Biology, 22, 683–698.
-
(2009)
Journal of Evolutionary Biology
, vol.22
, pp. 683-698
-
-
de Vienne, D.M.1
Refrégier, G.2
Hood, M.E.3
-
107
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
Watterson GA (1975) On the number of segregating sites in genetical models without recombination. Theoretical Population Biology, 7, 256–276.
-
(1975)
Theoretical Population Biology
, vol.7
, pp. 256-276
-
-
Watterson, G.A.1
-
109
-
-
18744383071
-
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
-
Wu TD, Watanabe CK (2005) GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics, 21, 1859–1875.
-
(2005)
Bioinformatics
, vol.21
, pp. 1859-1875
-
-
Wu, T.D.1
Watanabe, C.K.2
-
110
-
-
0034800374
-
InterProScan – an integration platform for the signature-recognition methods in InterPro
-
Zdobnov EM, Apweiler R (2001) InterProScan – an integration platform for the signature-recognition methods in InterPro. Bioinformatics, 17, 847–848.
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
111
-
-
33751342650
-
Statistical tests for detecting positive selection by utilizing high-frequency variants
-
Zeng K, Fu Y-X, Shi S, Wu C-I (2006) Statistical tests for detecting positive selection by utilizing high-frequency variants. Genetics, 174, 1431–1439.
-
(2006)
Genetics
, vol.174
, pp. 1431-1439
-
-
Zeng, K.1
Fu, Y.-X.2
Shi, S.3
Wu, C.-I.4
|