Short TpA-rich segments of the ζ-η region induce DNA methylation in Neurospora crassa

Journal of Molecular Biology

Volumn 300, Issue 2, 2000, Pages 249-273

  Miao, Vivian P W ^a   Freitag, Michael ^a   Selker, Eric U ^a  

^a UNIVERSITY OF OREGON   (United States)

Author keywords

5 methyl cytosine; De novo methylation; DNA methylation; Neurospora; RIP

Indexed keywords

FUNGAL DNA; NUCLEOTIDE;

ARTICLE; CHROMATIN; DNA METHYLATION; GENE DELETION; MODEL; NEUROSPORA CRASSA; NONHUMAN; NUCLEOTIDE SEQUENCE; POINT MUTATION; PRIORITY JOURNAL;

NEUROSPORA CRASSA;

EID: 0034616952     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.3864     Document Type: Article

References (109)

1. Plant methyltransferases and their targets in the plant genome
2. Structural maintenance of chromosomes protein C-terminal domains bind preferentially to DNA with secondary structure
3. DNA methylation in the fungi
4. Gene replacements at the his-3 locus of Neurospora crassa
5. AT-hook motifs identified in a wide variety of DNA-binding proteins
6. The distribution of genes in the genomes of Gramineae
7. Methylation induced premeiotically in Ascobolus: Coextension with DNA repeat lengths and effect on transcript elongation
8. DNA methyltransferases in mammalian development and genome defense
9. A comparison of DNA methylation levels in selected isolates of higher fungi
10. DNA methylation de novo
11. CpG-rich islands and the function of DNA methylation
12. Methylation-induced repression - Belts, braces, and chromatin
13. Sp1 elements protect a CpG island from de novo methylation
14. Over-and under-representation of short oligonucleotides in DNA sequences
15. Repeat-induced G-C to A-T mutations in Neurospora
16. Recurrence of repeat-induced point mutation (RIP) in Neurospora crassa
17. Demethylation of somatic and testis-specific histone H2A and H2B genes in F9 embryonal carcinoma cells
18. Transgene silencing of the al-1 gene in vegetative cells of Neurospora is mediated by a cytoplasmic effector and does not depend on DNA-DNA interactions or DNA methylation
19. Genetic and microbiological research techniques for Neurospora crassa
20. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity (I)
21. Demethylation of CpG islands in embryonic cells
22. Delayed de novo methylation in teratocarcinoma suggests additional tissue-specific mechanisms for controlling gene expression
23. S1 SINE retroposons are methylated at symmetrical and non-symmetrical positions in Brassica napus: Identification of a preferred target site for asymmetrical methylation
24. Perpetuation of cytosine methylation in Ascobolus immersus implies a novel type of maintenance methylase
25. A natural case of RIP: Degeneration of DNA sequence in an ancestral tandem duplication
26. Sequence specificity of methylation in higher plant DNA
27. Enhancement of reporter gene de novo methylation by DNA fragments from the α-fetoprotein control region
28. Factors affecting de novo methylation of foreign DNA in mouse embryonic stem cells
29. SMC-mediated chromosome mechanics: A conserved scheme from bacteria to vertebrates?
30. DNA modification mechanisms and gene activity during development
31. Base composition of DNA from glomalean fungi: High amounts of methylated cytosine
32. cis-Acting signal for inheritance of imprinted DNA methylation patterns in the preimplantation mouse embryo
33. The solution structure of an HMG-I(Y)-DNA complex defines a new architectural minor groove binding motif
34. Small scale DNA preps for Neurospora crassa
35. De novo methylation and expression of retroviral genomes during mouse embyogenesis
36. Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription
37. Nuclear extracts of chicken embryos promote an active demethylation of DNA by excision repair of 5-methyldeoxycytidine
38. Mechanism of DNA demethylation in vertebrates and its biological significance
39. DNA methylation directs a time-dependent repression of transcription initiation
40. How does DNA methylation repress transcription?
41. Direct selective procedure for isolating Neurospora mutants defective in nicotinamide adenine dinucleotide phosphate- specific glutamate dehydrogenase
42. The maintenance of methylation-free islands in transgenic mice
43. Sequence and structure of mtr, an amino acid transport gene of Neurospora crassa
44. Persistence or loss of preimposed methylation patterns and de novo methylation of foreign DNA integrated in transgenic mice
45. Role for DNA methylation in genomic imprinting
46. Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
47. B cell-specific demethylation: A novel role for the intronic kappa chain enhancer sequence
48. Translational regulation in response to changes in amino acid availability in Neurospora crassa
49. Sp1 sites in the mouse aprt gene promoter are required to prevent methylation of the CpG island
50. Improved plasmids for gene targeting at the his-3 locus of Neurospora crassa by electroporation
51. A methylated Neurospora 5S rRNA pseudogene contains a transposable element inactivated by RIP
52. Sequence-dependent kinks induced in curved DNA
53. Single-stranded DNA 'blue' T7 promoter plasmids: A versatile tandem promoter system for cloning and protein engineering
54. Identification and chromosomal distribution of 5S rRNA genes in Neurospora crassa
55. A targeted replacement system for identification of signals for de novo methylation in Neurospora crassa
56. The distribution of 5-methylcytosine in the nuclear genome of plants
57. A cis-acting element accounts for a conserved methylation pattern upstream of the mouse adenine phosphoribosyltransferase gene
58. Epigenetic gene inactivation induced by a cis-acting methylation center
59. The primary function of a redundant Sp1 binding site in the mouse aprt gene promoter is to block epigenetic gene inactivation
60. Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex
61. MBD2 is a transcriptional repressor belonging to the MeCP1 histone deacetylase complex
62. DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
63. A simple method of obtaining pure microconidia in Neurospora crassa
64. Dynamics of demethylation and activation of the α-actin gene in myoblasts
65. Altering genotype and phenotype by DNA-mediated gene transfer
66. Methylation of foreign DNA sequences in eukaryotic cells
67. 5-Methylcytosine is not detectable in Saccharomyces cerevisiae DNA
68. DNA methylation and embryogenesis
69. Insertion of foreign DNA into an established mammalian genome can alter the methylation of cellular DNA sequences
70. X inactivation, differentiation, and DNA methylation
71. DNA methylation inhibits elongation but not initiation of transcription in Neurospora crassa
72. DNA sequencing with chain-terminating inhibitors
73. On the mechanism of inhibition of DNA-cytosine methyltransferases by cytosine analogs
74. DNA methylation and chromatin structure: A view from below
75. Premeiotic instability of repeated sequences in Neurospora crassa
76. Control of DNA methylation in fungi
77. Epigenetic phenomena in filamentous fungi: Useful paradigms or repeat-induced confusion?
78. Trichostatin A causes selective loss of DNA methylation in Neurospora
79. Rearrangement of duplicated DNA in specialized cells of Neurospora
80. Dense non-symmetrical DNA methylation resulting from repeat-induced point mutation (RIP) in Neurospora
81. DNA sequence duplications trigger gene inactivation in Neurospora crassa
82. A portable signal causing faithful DNA methylation de novo in Neurospora crassa
83. Dissection of the signal for DNA methylation in the ζ-η region of Neurospora
84. DNA methylation at asymmetric sites is associated with numerous transition mutations
85. Signal for DNA methylation associated with tandem duplication in Neurospora crassa
86. Rapid evolutionary decay of a novel pair of 5 S RNA genes
87. Nonmethylated transposable elements and methylated genes in a chordate genome
88. Methylation of DNA in mouse early embryos, teratocarcinoma cells and adult tissues of mouse and rabbit
89. DNA methylation associated with repeat-induced point mutation in Neurospora crassa
90. A mammalian high mobility group protein recognizes any stretch of six A · T base-pairs in duplex DNA
91. DNA methylation patterns: An additional level of information?
92. Nucleotide-sequence-specific de novo methylation in a somatic murine cell line
93. A DNA signal from the Thy-1 gene defines de novo methylation patterns in embryonic stem cells
94. High-frequency conversion to a 'fluffy' developmental phenotype in Aspergillus s pp. by 5-azacytidine treatment: Evidence for involvement of a single nuclear gene
95. Genomic sequencing reveals a 5-methylcytosine-free domain in active promoters and the spreading of preimposed methylation patterns
96. Establishment of de novo DNA methylation patterns: Transcription factor binding and deoxycytidine methylation at CpG and non-CpG sequences in an integrated adenovirus promoter
97. The establishment and maintenance of DNA methylation patterns in mouse somatic cells
98. Formation of methylation patterns in the mammalian genome
99. Region- and cell type-specific de novo DNA methylation in cultured mammalian cells
100. Methylation of genomes and genes at the invertebrate-vertebrate boundary
101. Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation
102. DNA demethylation in vitro: Involvement of RNA
103. Chicken MAR-binding protein ARBP is homologous to rat methyl-CpG- binding protein MeCP2
104. The fission yeast gene pmt1+ encodes a DNA methyltransferase homologue
105. Tandem B1 elements located in a mouse methylation center provide a target for de novo DNA methylation
106. Cytosine methylation and the ecology of intragenomic parasites
107. Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation
108. Inheritance of DNA methylation in Coprinus cinereus