-
1
-
-
84864832121
-
Mycology. Attack of the clones
-
Kupferschmidt K: Mycology. Attack of the clones. Science 2012, 337:636-638.
-
(2012)
Science
, vol.337
, pp. 636-638
-
-
Kupferschmidt, K.1
-
2
-
-
10244239321
-
Life with 6000 genes
-
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, Galibert F, Hoheisel JD, Jacq C, Johnston M, Louis EJ, Mewes HW, Murakami Y, Philippsen P, Tettelin H, Oliver SG: Life with 6000 genes. Science 1996, 274:563-567.
-
(1996)
Science
, vol.274
, pp. 563-567
-
-
Goffeau, A.1
Barrell, B.G.2
Bussey, H.3
Davis, R.W.4
Dujon, B.5
Feldmann, H.6
Galibert, F.7
Hoheisel, J.D.8
Jacq, C.9
Johnston, M.10
Louis, E.J.11
Mewes, H.W.12
Murakami, Y.13
Philippsen, P.14
Tettelin, H.15
Oliver, S.G.16
-
3
-
-
0037464589
-
The genome sequence of the filamentous fungus Neurospora crassa
-
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, Butler J, Endrizzi M, Qui D, Ianakiev P, Bell-Pedersen D, Nelson MA, Werner-Washburne M, Selitrennikoff CP, Kinsey JA, Braun EL, Zelter A, Schulte U, Kothe GO, Jedd G, Mewes W, et al: The genome sequence of the filamentous fungus Neurospora crassa. Nature 2003, 422:859-868.
-
(2003)
Nature
, vol.422
, pp. 859-868
-
-
Galagan, J.E.1
Calvo, S.E.2
Borkovich, K.A.3
Selker, E.U.4
Read, N.D.5
Jaffe, D.6
FitzHugh, W.7
Ma, L.J.8
Smirnov, S.9
Purcell, S.10
Rehman, B.11
Elkins, T.12
Engels, R.13
Wang, S.14
Nielsen, C.B.15
Butler, J.16
Endrizzi, M.17
Qui, D.18
Ianakiev, P.19
Bell-Pedersen, D.20
Nelson, M.A.21
Werner-Washburne, M.22
Selitrennikoff, C.P.23
Kinsey, J.A.24
Braun, E.L.25
Zelter, A.26
Schulte, U.27
Kothe, G.O.28
Jedd, G.29
Mewes, W.30
more..
-
4
-
-
20244366844
-
The genome sequence of the rice blast fungus Magnaporthe grisea
-
Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YH, Carbone I, Brown D, Oh YY, Donofrio N, Jeong JS, Soanes DM, Djonovic S, Kolomiets E, Rehmeyer C, Li W, Harding M, Kim S, Lebrun MH, Bohnert H, Coughlan S, Butler J, Calvo S, Ma LJ, et al: The genome sequence of the rice blast fungus Magnaporthe grisea. Nature 2005, 434:980-986.
-
(2005)
Nature
, vol.434
, pp. 980-986
-
-
Dean, R.A.1
Talbot, N.J.2
Ebbole, D.J.3
Farman, M.L.4
Mitchell, T.K.5
Orbach, M.J.6
Thon, M.7
Kulkarni, R.8
Xu, J.R.9
Pan, H.10
Read, N.D.11
Lee, Y.H.12
Carbone, I.13
Brown, D.14
Oh, Y.Y.15
Donofrio, N.16
Jeong, J.S.17
Soanes, D.M.18
Djonovic, S.19
Kolomiets, E.20
Rehmeyer, C.21
Li, W.22
Harding, M.23
Kim, S.24
Lebrun, M.H.25
Bohnert, H.26
Coughlan, S.27
Butler, J.28
Calvo, S.29
Ma, L.J.30
more..
-
5
-
-
33750597877
-
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis
-
Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, Banuett F, Kronstad JW, Gold SE, Müller O, Perlin MH, Wösten HAB, de Vries R, Ruiz-Herrera J, Reynaga-Peña CG, Snetselaar K, McCann M, Pérez-Martín J, Feldbrügge M, Basse CW, Steinberg G, Ibeas JI, Holloman W, Guzman P, Farman M, Stajich JE, Sentandreu R, González-Prieto JM, Kennell JC, Molina L, et al: Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature 2006, 444:97-101.
-
(2006)
Nature
, vol.444
, pp. 97-101
-
-
Kämper, J.1
Kahmann, R.2
Bölker, M.3
Ma, L.J.4
Brefort, T.5
Saville, B.J.6
Banuett, F.7
Kronstad, J.W.8
Gold, S.E.9
Müller, O.10
Perlin, M.H.11
Wösten, H.A.B.12
de Vries, R.13
Ruiz-Herrera, J.14
Reynaga-Peña, C.G.15
Snetselaar, K.16
McCann, M.17
Pérez-Martín, J.18
Feldbrügge, M.19
Basse, C.W.20
Steinberg, G.21
Ibeas, J.I.22
Holloman, W.23
Guzman, P.24
Farman, M.25
Stajich, J.E.26
Sentandreu, R.27
González-Prieto, J.M.28
Kennell, J.C.29
Molina, L.30
more..
-
6
-
-
34548669353
-
The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization
-
Cuomo CA, Güldener U, Xu JR, Trail F, Turgeon BG, Di Pietro A, Walton JD, Ma LJ, Baker SE, Rep M, Adam G, Antoniw J, Baldwin T, Calvo S, Chang YL, Decaprio D, Gale LR, Gnerre S, Goswami RS, Hammond-Kosack K, Harris LJ, Hilburn K, Kennell JC, Kroken S, Magnuson JK, Mannhaupt G, Mauceli E, Mewes HW, Mitterbauer R, Muehlbauer G, et al: The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science 2007, 317:1400-1402.
-
(2007)
Science
, vol.317
, pp. 1400-1402
-
-
Cuomo, C.A.1
Güldener, U.2
Xu, J.R.3
Trail, F.4
Turgeon, B.G.5
Di Pietro, A.6
Walton, J.D.7
Ma, L.J.8
Baker, S.E.9
Rep, M.10
Adam, G.11
Antoniw, J.12
Baldwin, T.13
Calvo, S.14
Chang, Y.L.15
Decaprio, D.16
Gale, L.R.17
Gnerre, S.18
Goswami, R.S.19
Hammond-Kosack, K.20
Harris, L.J.21
Hilburn, K.22
Kennell, J.C.23
Kroken, S.24
Magnuson, J.K.25
Mannhaupt, G.26
Mauceli, E.27
Mewes, H.W.28
Mitterbauer, R.29
Muehlbauer, G.30
more..
-
7
-
-
37848998569
-
Dothideomycete-plant Interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum
-
Hane JK, Lowe RG, Solomon PS, Tan KC, Schoch CL, Spatafora JW, Crous PW, Kodira C, Birren BW, Galagan JE, Torriani SF, McDonald BA, Oliver RP: Dothideomycete-plant Interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum. Plant Cell 2007, 19:3347-3368.
-
(2007)
Plant Cell
, vol.19
, pp. 3347-3368
-
-
Hane, J.K.1
Lowe, R.G.2
Solomon, P.S.3
Tan, K.C.4
Schoch, C.L.5
Spatafora, J.W.6
Crous, P.W.7
Kodira, C.8
Birren, B.W.9
Galagan, J.E.10
Torriani, S.F.11
McDonald, B.A.12
Oliver, R.P.13
-
8
-
-
84861182813
-
Genome evolution in filamentous plant pathogens: why bigger can be better
-
Raffaele S, Kamoun S: Genome evolution in filamentous plant pathogens: why bigger can be better. Nat Rev Microbiol 2012, 10:417-430.
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 417-430
-
-
Raffaele, S.1
Kamoun, S.2
-
9
-
-
84875420788
-
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point Mutations
-
Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, Dominguez V, Anthouard V, Bally P, Bourras S, Cozijnsen AJ, Ciuffetti LM, Degrave A, Dilmaghani A, Duret L, Fudal I, Goodwin SB, Gout L, Glaser N, Linglin J, Kema GH, Lapalu N, Lawrence CB, May K, Meyer M, Ollivier B, Poulain J, Schoch CL, Simon A, Spatafora JW, et al: Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point Mutations. Nat Commun 2011, 2:202.
-
(2011)
Nat Commun
, vol.2
, pp. 202
-
-
Rouxel, T.1
Grandaubert, J.2
Hane, J.K.3
Hoede, C.4
van de Wouw, A.P.5
Couloux, A.6
Dominguez, V.7
Anthouard, V.8
Bally, P.9
Bourras, S.10
Cozijnsen, A.J.11
Ciuffetti, L.M.12
Degrave, A.13
Dilmaghani, A.14
Duret, L.15
Fudal, I.16
Goodwin, S.B.17
Gout, L.18
Glaser, N.19
Linglin, J.20
Kema, G.H.21
Lapalu, N.22
Lawrence, C.B.23
May, K.24
Meyer, M.25
Ollivier, B.26
Poulain, J.27
Schoch, C.L.28
Simon, A.29
Spatafora, J.W.30
more..
-
11
-
-
4143050271
-
RIP: the evolutionary cost of genome defense
-
Galagan JE, Selker EU: RIP: the evolutionary cost of genome defense. Trends Genet 2004, 20:417-423.
-
(2004)
Trends Genet
, vol.20
, pp. 417-423
-
-
Galagan, J.E.1
Selker, E.U.2
-
12
-
-
33644661710
-
Lost in the middle of nowhere: the AvrLm1 avirulence gene of the Dothideomycete Leptosphaeria maculans
-
Gout L, Fudal I, Kuhn ML, Blaise F, Eckert M, Cattolico L, Balesdent MH, Rouxel T: Lost in the middle of nowhere: the AvrLm1 avirulence gene of the Dothideomycete Leptosphaeria maculans. Mol Microbiol 2006, 60:97-80.
-
(2006)
Mol Microbiol
, vol.60
, pp. 97-180
-
-
Gout, L.1
Fudal, I.2
Kuhn, M.L.3
Blaise, F.4
Eckert, M.5
Cattolico, L.6
Balesdent, M.H.7
Rouxel, T.8
-
13
-
-
33947403509
-
Heterochromatin-like regions as ecological niches for avirulence genes in the Leptosphaeria maculans genome: map-based cloning of AvrLm6
-
Fudal I, Ross S, Gout L, Blaise F, Kuhn ML, Eckert MR, Cattolico L, Bernard-Samain S, Balesdent MH, Rouxel T: Heterochromatin-like regions as ecological niches for avirulence genes in the Leptosphaeria maculans genome: map-based cloning of AvrLm6. Mol Plant-Microbe Interact 2007, 20:459-470.
-
(2007)
Mol Plant-Microbe Interact
, vol.20
, pp. 459-470
-
-
Fudal, I.1
Ross, S.2
Gout, L.3
Blaise, F.4
Kuhn, M.L.5
Eckert, M.R.6
Cattolico, L.7
Bernard-Samain, S.8
Balesdent, M.H.9
Rouxel, T.10
-
14
-
-
60349118932
-
Leptosphaeria maculans avirulence gene AvrLm4-7 confers a dual recognition specificity by the Rlm4 and Rlm7 resistance genes of oilseed rape, and circumvents Rlm4-mediated recognition through a single amino acid change
-
Parlange F, Daverdin G, Fudal I, Kuhn ML, Balesdent MH, Blaise F, Grezes-Besset B, Rouxel T: Leptosphaeria maculans avirulence gene AvrLm4-7 confers a dual recognition specificity by the Rlm4 and Rlm7 resistance genes of oilseed rape, and circumvents Rlm4-mediated recognition through a single amino acid change. Mol Microbiol 2009, 71:851-863.
-
(2009)
Mol Microbiol
, vol.71
, pp. 851-863
-
-
Parlange, F.1
Daverdin, G.2
Fudal, I.3
Kuhn, M.L.4
Balesdent, M.H.5
Blaise, F.6
Grezes-Besset, B.7
Rouxel, T.8
-
15
-
-
84876418795
-
The dispensable chromosome of Leptosphaeria maculans shelters an effector gene conferring avirulence towards Brassica rapa
-
Balesdent MH, Fudal I, Ollivier B, Bally P, Grandaubert J, Eber F, Chèvre AM, Leflon M, Rouxel T: The dispensable chromosome of Leptosphaeria maculans shelters an effector gene conferring avirulence towards Brassica rapa. New Phytol 2013, 198:887-898.
-
(2013)
New Phytol
, vol.198
, pp. 887-898
-
-
Balesdent, M.H.1
Fudal, I.2
Ollivier, B.3
Bally, P.4
Grandaubert, J.5
Eber, F.6
Chèvre, A.M.7
Leflon, M.8
Rouxel, T.9
-
16
-
-
67650473552
-
Repeat-induced point mutation (RIP) as an alternative mechanism of evolution toward virulence in Leptosphaeria maculans
-
Fudal I, Ross S, Brun H, Besnard AL, Ermel M, Kuhn ML, Balesdent MH, Rouxel T: Repeat-induced point mutation (RIP) as an alternative mechanism of evolution toward virulence in Leptosphaeria maculans. Mol Plant Microbe Interact 2009, 22:932-941.
-
(2009)
Mol Plant Microbe Interact
, vol.22
, pp. 932-941
-
-
Fudal, I.1
Ross, S.2
Brun, H.3
Besnard, A.L.4
Ermel, M.5
Kuhn, M.L.6
Balesdent, M.H.7
Rouxel, T.8
-
17
-
-
79251468710
-
Evolution of linked avirulence effectors in Leptosphaeria maculans is affected by genomic environment and exposure to resistance genes in host plants
-
Van de Wouw AP, Cozijnsen AJ, Hane JK, Brunner PC, McDonald BA, Oliver RP, Howlett BJ: Evolution of linked avirulence effectors in Leptosphaeria maculans is affected by genomic environment and exposure to resistance genes in host plants. PLoS Pathog 2010, 6:e1001180.
-
(2010)
PLoS Pathog
, vol.6
-
-
Van de Wouw, A.P.1
Cozijnsen, A.J.2
Hane, J.K.3
Brunner, P.C.4
McDonald, B.A.5
Oliver, R.P.6
Howlett, B.J.7
-
18
-
-
84870847734
-
Genome structure and reproductive behaviour influence the evolutionary potential of a fungal phytopathogen
-
Daverdin G, Rouxel T, Gout L, Aubertot JN, Fudal I, Meyer M, Parlange F, Carpezat J, Balesdent MH: Genome structure and reproductive behaviour influence the evolutionary potential of a fungal phytopathogen. PLoS Pathog 2012, 8:e1003020.
-
(2012)
PLoS Pathog
, vol.8
-
-
Daverdin, G.1
Rouxel, T.2
Gout, L.3
Aubertot, J.N.4
Fudal, I.5
Meyer, M.6
Parlange, F.7
Carpezat, J.8
Balesdent, M.H.9
-
19
-
-
35948986776
-
Genome structure impacts molecular evolution at the AvrLm1 avirulence locus of the plant pathogen Leptosphaeria maculans
-
Gout L, Kuhn ML, Vincenot L, Bernard-Samain S, Cattolico L, Barbetti M, Moreno-Rico O, Balesdent MH, Rouxel T: Genome structure impacts molecular evolution at the AvrLm1 avirulence locus of the plant pathogen Leptosphaeria maculans. Environ Microbiol 2007, 9:2978-2992.
-
(2007)
Environ Microbiol
, vol.9
, pp. 2978-2992
-
-
Gout, L.1
Kuhn, M.L.2
Vincenot, L.3
Bernard-Samain, S.4
Cattolico, L.5
Barbetti, M.6
Moreno-Rico, O.7
Balesdent, M.H.8
Rouxel, T.9
-
20
-
-
35648941643
-
Origin and distribution of epipolythiodioxopiperazine (ETP) gene clusters in filamentous ascomycetes
-
Patron NJ, Waller RF, Cozijnsen AJ, Straney DC, Gardiner DM, Nierman WC, Howlett BJ: Origin and distribution of epipolythiodioxopiperazine (ETP) gene clusters in filamentous ascomycetes. BMC Evol Biol 2007, 7:e174.
-
(2007)
BMC Evol Biol
, vol.7
-
-
Patron, N.J.1
Waller, R.F.2
Cozijnsen, A.J.3
Straney, D.C.4
Gardiner, D.M.5
Nierman, W.C.6
Howlett, B.J.7
-
21
-
-
1242277233
-
Molecular phylogeny of the Leptosphaeria maculans-L. biglobosa species complex
-
Mendes-Pereira E, Balesdent MH, Brun H, Rouxel T: Molecular phylogeny of the Leptosphaeria maculans-L. biglobosa species complex. Mycol Res 2003, 107:1287-1304.
-
(2003)
Mycol Res
, vol.107
, pp. 1287-1304
-
-
Mendes-Pereira, E.1
Balesdent, M.H.2
Brun, H.3
Rouxel, T.4
-
22
-
-
26444531574
-
Phylogenetic relationships between members of the crucifer pathogenic Leptosphaeria maculans species complex as shown by mating type (MAT1-2), actin, and ß-tubulin sequences
-
Voigt K, Cozijnsen AJ, Kroymann J, Pöggeler S, Howlett BJ: Phylogenetic relationships between members of the crucifer pathogenic Leptosphaeria maculans species complex as shown by mating type (MAT1-2), actin, and ß-tubulin sequences. Mol Phylogenet Evol 2005, 37:541-557.
-
(2005)
Mol Phylogenet Evol
, vol.37
, pp. 541-557
-
-
Voigt, K.1
Cozijnsen, A.J.2
Kroymann, J.3
Pöggeler, S.4
Howlett, B.J.5
-
23
-
-
28844474248
-
Worldwide importance of phoma stem canker (Leptosphaeria maculans and L. biglobosa) on oilseed rape (Brassica napus)
-
Fitt BDL, Brun H, Barbetti MJ, Rimmer SR: Worldwide importance of phoma stem canker (Leptosphaeria maculans and L. biglobosa) on oilseed rape (Brassica napus). Eur J Plant Pathol 2006, 114:3-15.
-
(2006)
Eur J Plant Pathol
, vol.114
, pp. 3-15
-
-
Fitt, B.D.L.1
Brun, H.2
Barbetti, M.J.3
Rimmer, S.R.4
-
24
-
-
0036272591
-
Colonization of winter oilseed rape tissues by A/Tox + and B/Tox0 Leptosphaeria maculans (phoma stem canker) in France and England
-
West JS, Balesdent MH, Rouxel T, Narcy JP, Huang YJ, Roux J, Steed JM, Fitt BDL, Schmit J: Colonization of winter oilseed rape tissues by A/Tox + and B/Tox0 Leptosphaeria maculans (phoma stem canker) in France and England. Plant Pathol 2002, 51:311-321.
-
(2002)
Plant Pathol
, vol.51
, pp. 311-321
-
-
West, J.S.1
Balesdent, M.H.2
Rouxel, T.3
Narcy, J.P.4
Huang, Y.J.5
Roux, J.6
Steed, J.M.7
Fitt, B.D.L.8
Schmit, J.9
-
25
-
-
67749119915
-
The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits
-
Schoch CL, Sung GH, López-Giráldez F, Townsend JP, Miadlikowska J, Hofstetter V, Robbertse B, Matheny PB, Kauff F, Wang Z, Gueidan C, Andrie RM, Trippe K, Ciufetti LM, Wynns A, Fraker E, Hodkinson BP, Bonito G, Groenewald JZ, Arzanlou M, de Hoog GS, Crous PW, Hewitt D, Pfister DH, Peterson K, Gryzenhout M, Wingfield MJ, Aptroot A, Suh SO, Blackwell M, et al: The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Syst Biol 2009, 58:224-239.
-
(2009)
Syst Biol
, vol.58
, pp. 224-239
-
-
Schoch, C.L.1
Sung, G.H.2
López-Giráldez, F.3
Townsend, J.P.4
Miadlikowska, J.5
Hofstetter, V.6
Robbertse, B.7
Matheny, P.B.8
Kauff, F.9
Wang, Z.10
Gueidan, C.11
Andrie, R.M.12
Trippe, K.13
Ciufetti, L.M.14
Wynns, A.15
Fraker, E.16
Hodkinson, B.P.17
Bonito, G.18
Groenewald, J.Z.19
Arzanlou, M.20
de Hoog, G.S.21
Crous, P.W.22
Hewitt, D.23
Pfister, D.H.24
Peterson, K.25
Gryzenhout, M.26
Wingfield, M.J.27
Aptroot, A.28
Suh, S.O.29
Blackwell, M.30
more..
-
26
-
-
84868159385
-
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi
-
Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV: Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. PLoS Pathog 2012, 8:e1003037.
-
(2012)
PLoS Pathog
, vol.8
-
-
Ohm, R.A.1
Feau, N.2
Henrissat, B.3
Schoch, C.L.4
Horwitz, B.A.5
Barry, K.W.6
Condon, B.J.7
Copeland, A.C.8
Dhillon, B.9
Glaser, F.10
Hesse, C.N.11
Kosti, I.12
LaButti, K.13
Lindquist, E.A.14
Lucas, S.15
Salamov, A.A.16
Bradshaw, R.E.17
Ciuffetti, L.18
Hamelin, R.C.19
Kema, G.H.20
Lawrence, C.21
Scott, J.A.22
Spatafora, J.W.23
Turgeon, B.G.24
de Wit, P.J.25
Zhong, S.26
Goodwin, S.B.27
Grigoriev, I.V.28
more..
-
27
-
-
77954765891
-
A class-wide phylogenetic assessment of Dothideomycetes
-
Schoch CL, Crous PW, Groenewald JZ, Boehm EW, Burgess TI, de Gruyter J, de Hoog GS, Dixon LJ, Grube M, Gueidan C, Harada Y, Hatakeyama S, Hirayama K, Hosoya T, Huhndorf SM, Hyde KD, Jones EBG, Kohlmeyer J, Kruys A, Li YM, Lücking R, Lumbsch HT, Marvanová L, Mbatchou JS, McVay AH, Miller AN, Mugambi GK, Muggia L, Nelsen MP, Nelson P, et al: A class-wide phylogenetic assessment of Dothideomycetes. Stud Mycol 2009, 64:1-15S10.
-
(2009)
Stud Mycol
, vol.64
, pp. 1-15S10
-
-
Schoch, C.L.1
Crous, P.W.2
Groenewald, J.Z.3
Boehm, E.W.4
Burgess, T.I.5
de Gruyter, J.6
de Hoog, G.S.7
Dixon, L.J.8
Grube, M.9
Gueidan, C.10
Harada, Y.11
Hatakeyama, S.12
Hirayama, K.13
Hosoya, T.14
Huhndorf, S.M.15
Hyde, K.D.16
Jones, E.B.G.17
Kohlmeyer, J.18
Kruys, A.19
Li, Y.M.20
Lücking, R.21
Lumbsch, H.T.22
Marvanová, L.23
Mbatchou, J.S.24
McVay, A.H.25
Miller, A.N.26
Mugambi, G.K.27
Muggia, L.28
Nelsen, M.P.29
Nelson, P.30
more..
-
28
-
-
0345169467
-
Dry-rot of Swedes and turnips: its cause and control
-
Cunningham GH: Dry-rot of Swedes and turnips: its cause and control. N-Z Dep Agric Bull 1927, 133:51 pp.
-
(1927)
N-Z Dep Agric Bull
, vol.133
, pp. 51
-
-
Cunningham, G.H.1
-
29
-
-
0006058211
-
Variability in Phoma lingam
-
Pound GS: Variability in Phoma lingam. J Agric Res 1947, 75:113-133.
-
(1947)
J Agric Res
, vol.75
, pp. 113-133
-
-
Pound, G.S.1
-
30
-
-
0034875657
-
The telemorph of the weakly aggressive segregate of Leptosphaeria maculans
-
Shoemaker RA, Brun H: The telemorph of the weakly aggressive segregate of Leptosphaeria maculans. Can J Bot 2001, 79:412-419.
-
(2001)
Can J Bot
, vol.79
, pp. 412-419
-
-
Shoemaker, R.A.1
Brun, H.2
-
31
-
-
84870667343
-
The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry
-
de Wit PJ, van der Burgt A, ökmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths SA, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Jashni MK, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, et al: The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry. PLoS Genet 2012, 8:e1003088.
-
(2012)
PLoS Genet
, vol.8
-
-
de Wit, P.J.1
van der Burgt, A.2
Ökmen, B.3
Stergiopoulos, I.4
Abd-Elsalam, K.A.5
Aerts, A.L.6
Bahkali, A.H.7
Beenen, H.G.8
Chettri, P.9
Cox, M.P.10
Datema, E.11
de Vries, R.P.12
Dhillon, B.13
Ganley, A.R.14
Griffiths, S.A.15
Guo, Y.16
Hamelin, R.C.17
Henrissat, B.18
Kabir, M.S.19
Jashni, M.K.20
Kema, G.21
Klaubauf, S.22
Lapidus, A.23
Levasseur, A.24
Lindquist, E.25
Mehrabi, R.26
Ohm, R.A.27
Owen, T.J.28
Salamov, A.29
Schwelm, A.30
more..
-
32
-
-
84883177540
-
Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence
-
Manning VA, Pandelova I, Dhillon B, Wilhelm LJ, Goodwin SB, Berlin AM, Figueroa M, Freitag M, Hane JK, Henrissat B, Holman WH, Kodira CD, Martin J, Oliver RP, Robbertse B, Schackwitz W, Schwartz DC, Spatafora JW, Turgeon BG, Yandava C, Young S, Zhou S, Zeng Q, Grigoriev IV, Ma LJ, Ciuffetti LM: Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence. G3 2013, 3:41-63.
-
(2013)
G3
, vol.3
, pp. 41-63
-
-
Manning, V.A.1
Pandelova, I.2
Dhillon, B.3
Wilhelm, L.J.4
Goodwin, S.B.5
Berlin, A.M.6
Figueroa, M.7
Freitag, M.8
Hane, J.K.9
Henrissat, B.10
Holman, W.H.11
Kodira, C.D.12
Martin, J.13
Oliver, R.P.14
Robbertse, B.15
Schackwitz, W.16
Schwartz, D.C.17
Spatafora, J.W.18
Turgeon, B.G.19
Yandava, C.20
Young, S.21
Zhou, S.22
Zeng, Q.23
Grigoriev, I.V.24
Ma, L.J.25
Ciuffetti, L.M.26
more..
-
33
-
-
78650122420
-
Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism
-
Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stüber K, Ver Loren Van Themaat E, Brown JK, Butcher SA, Gurr SJ, Lebrun MH, Ridout CJ, Schulze-Lefert P, Talbot NJ, Ahmadinejad N, Ametz C, Barton GR, Benjdia M, Bidzinski P, Bindschedler LV, Both M, Brewer MT, Cadle-Davidson L, Cadle-Davidson MM, Collemare J, Cramer R, Frenkel O, Godfrey D, Harriman J, Hoede C, et al: Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science 2010, 330:1543-1546.
-
(2010)
Science
, vol.330
, pp. 1543-1546
-
-
Spanu, P.D.1
Abbott, J.C.2
Amselem, J.3
Burgis, T.A.4
Soanes, D.M.5
Stüber, K.6
Ver Loren Van Themaat, E.7
Brown, J.K.8
Butcher, S.A.9
Gurr, S.J.10
Lebrun, M.H.11
Ridout, C.J.12
Schulze-Lefert, P.13
Talbot, N.J.14
Ahmadinejad, N.15
Ametz, C.16
Barton, G.R.17
Benjdia, M.18
Bidzinski, P.19
Bindschedler, L.V.20
Both, M.21
Brewer, M.T.22
Cadle-Davidson, L.23
Cadle-Davidson, M.M.24
Collemare, J.25
Cramer, R.26
Frenkel, O.27
Godfrey, D.28
Harriman, J.29
Hoede, C.30
more..
-
34
-
-
79959340303
-
Obligate biotrophy features unraveled by the genomic analysis of rust fungi
-
Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, Joly DL, Hacquard S, Amselem J, Cantarel BL, Chiu R, Coutinho PM, Feau N, Field M, Frey P, Gelhaye E, Goldberg J, Grabherr MG, Kodira CD, Kohler A, Kües U, Lindquist EA, Lucas SM, Mago R, Mauceli E, Morin E, Murat C, Pangilinan JL, Park R, Pearson M, et al: Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc Natl Acad Sci U S A 2011, 108:9166-9171.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 9166-9171
-
-
Duplessis, S.1
Cuomo, C.A.2
Lin, Y.C.3
Aerts, A.4
Tisserant, E.5
Veneault-Fourrey, C.6
Joly, D.L.7
Hacquard, S.8
Amselem, J.9
Cantarel, B.L.10
Chiu, R.11
Coutinho, P.M.12
Feau, N.13
Field, M.14
Frey, P.15
Gelhaye, E.16
Goldberg, J.17
Grabherr, M.G.18
Kodira, C.D.19
Kohler, A.20
Kües, U.21
Lindquist, E.A.22
Lucas, S.M.23
Mago, R.24
Mauceli, E.25
Morin, E.26
Murat, C.27
Pangilinan, J.L.28
Park, R.29
Pearson, M.30
more..
-
35
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL: Versatile and open software for comparing large genomes. Genome Biol 2004, 5:R12.
-
(2004)
Genome Biol
, vol.5
, pp. R12
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
Salzberg, S.L.7
-
36
-
-
78549280179
-
In silico reversal of repeat-induced point mutation (RIP) identifies the origins of repeat families and uncovers obscured duplicated genes
-
Hane JK, Oliver RP: In silico reversal of repeat-induced point mutation (RIP) identifies the origins of repeat families and uncovers obscured duplicated genes. BMC Genomics 2010, 11:655.
-
(2010)
BMC Genomics
, vol.11
, pp. 655
-
-
Hane, J.K.1
Oliver, R.P.2
-
37
-
-
0141519279
-
OrthoMCL: identification of ortholog groups for eukaryotic genomes
-
Li L, Stoeckert CJ Jr, Roos DS: OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 2003, 13:2178-2189.
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
38
-
-
4444376010
-
The sirodesmin biosynthetic gene cluster of the plant pathogenic fungus Leptosphaeria maculans
-
Gardiner DM, Cozijnsen AJ, Wilson LM, Pedras MS, Howlett BJ: The sirodesmin biosynthetic gene cluster of the plant pathogenic fungus Leptosphaeria maculans. Mol Microbiol 2004, 53:1307-1318.
-
(2004)
Mol Microbiol
, vol.53
, pp. 1307-1318
-
-
Gardiner, D.M.1
Cozijnsen, A.J.2
Wilson, L.M.3
Pedras, M.S.4
Howlett, B.J.5
-
39
-
-
44649170477
-
Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi
-
Khaldi N, Collemare J, Lebrun MH, Wolfe KH: Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi. Genome Biol 2008, 9:R18.
-
(2008)
Genome Biol
, vol.9
, pp. R18
-
-
Khaldi, N.1
Collemare, J.2
Lebrun, M.H.3
Wolfe, K.H.4
-
40
-
-
84864815656
-
Global species numbers of fungi: are tropical studies and molecular approaches contributing to a more robust estimate?
-
Hawksworth DL: Global species numbers of fungi: are tropical studies and molecular approaches contributing to a more robust estimate? Biodiv Cons 2012, 21:2425-2433.
-
(2012)
Biodiv Cons
, vol.21
, pp. 2425-2433
-
-
Hawksworth, D.L.1
-
41
-
-
75149163249
-
Unravelling Mycosphaerella: do you believe in genera?
-
Crous PW, Summerell BA, Carnegie AJ, Wingfield MJ, Hunter GC, Burgess TI, Andjic V, Barber PA, Groenewald JZ: Unravelling Mycosphaerella: do you believe in genera? Persoonia 2009, 23:99-118.
-
(2009)
Persoonia
, vol.23
, pp. 99-118
-
-
Crous, P.W.1
Summerell, B.A.2
Carnegie, A.J.3
Wingfield, M.J.4
Hunter, G.C.5
Burgess, T.I.6
Andjic, V.7
Barber, P.A.8
Groenewald, J.Z.9
-
42
-
-
79960604431
-
Zymoseptoria gen. nov.: a new genus to accommodate Septoria-like species occurring on graminicolous hosts
-
Quaedvlieg W, Kema GH, Groenewald JZ, Verkley GJ, Seifbarghi S, Razavi M, Mirzadi Gohari A, Mehrabi R, Crous PW: Zymoseptoria gen. nov.: a new genus to accommodate Septoria-like species occurring on graminicolous hosts. Persoonia 2011, 26:57-69.
-
(2011)
Persoonia
, vol.26
, pp. 57-69
-
-
Quaedvlieg, W.1
Kema, G.H.2
Groenewald, J.Z.3
Verkley, G.J.4
Seifbarghi, S.5
Razavi, M.6
Mirzadi Gohari, A.7
Mehrabi, R.8
Crous, P.W.9
-
43
-
-
70349645483
-
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
-
Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, Jordar VS, Maiti R, Kodira CD, Neafsey DE, Zeng Q, Hung CY, McMahan C, Muszewska A, Grynberg M, Mandel MA, Kellner EM, Barker BM, Galgiani JN, Orbach MJ, Kirkland TN, Cole GT, Henn MR, Birren BW, Taylor JW: Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. Genome Res 2009, 19:1722-1731.
-
(2009)
Genome Res
, vol.19
, pp. 1722-1731
-
-
Sharpton, T.J.1
Stajich, J.E.2
Rounsley, S.D.3
Gardner, M.J.4
Wortman, J.R.5
Jordar, V.S.6
Maiti, R.7
Kodira, C.D.8
Neafsey, D.E.9
Zeng, Q.10
Hung, C.Y.11
McMahan, C.12
Muszewska, A.13
Grynberg, M.14
Mandel, M.A.15
Kellner, E.M.16
Barker, B.M.17
Galgiani, J.N.18
Orbach, M.J.19
Kirkland, T.N.20
Cole, G.T.21
Henn, M.R.22
Birren, B.W.23
Taylor, J.W.24
more..
-
44
-
-
84873498227
-
Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens
-
Condon BJ, Leng Y, Wu D, Bushley KE, Ohm RA, Otillar R, Martin J, Schackwitz W, Grimwood J, MohdZainudin N, Xue C, Wang R, Manning VA, Dhillon B, Tu ZJ, Steffenson BJ, Salamov A, Sun H, Lowry S, LaButti K, Han J, Copeland A, Lindquist E, Barry K, Schmutz J, Baker SE, Ciuffetti LM, Grigoriev IV, Zhong S, Turgeon BG: Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens. PLoS Genet 2013, 9:e1003233.
-
(2013)
PLoS Genet
, vol.9
-
-
Condon, B.J.1
Leng, Y.2
Wu, D.3
Bushley, K.E.4
Ohm, R.A.5
Otillar, R.6
Martin, J.7
Schackwitz, W.8
Grimwood, J.9
MohdZainudin, N.10
Xue, C.11
Wang, R.12
Manning, V.A.13
Dhillon, B.14
Tu, Z.J.15
Steffenson, B.J.16
Salamov, A.17
Sun, H.18
Lowry, S.19
LaButti, K.20
Han, J.21
Copeland, A.22
Lindquist, E.23
Barry, K.24
Schmutz, J.25
Baker, S.E.26
Ciuffetti, L.M.27
Grigoriev, I.V.28
Zhong, S.29
Turgeon, B.G.30
more..
-
45
-
-
79956280303
-
A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi
-
Hane JK, Rouxel T, Howlett BJ, Kema GH, Goodwin SB, Oliver RP: A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi. Genome Biol 2011, 12:R45.
-
(2011)
Genome Biol
, vol.12
, pp. R45
-
-
Hane, J.K.1
Rouxel, T.2
Howlett, B.J.3
Kema, G.H.4
Goodwin, S.B.5
Oliver, R.P.6
-
46
-
-
84883463113
-
The wheat powdery mildew genome shows the unique evolution of an obligate biotroph
-
Wicker T, Oberhaensli S, Parlange F, Buchmann JP, Shatalina M, Roffler S, Ben-David R, Doležel J, Šimková H, Schulze-Lefert P, Spanu PD, Bruggmann R, Amselem J, Quesneville H, Ver Loren Van Themaat E, Paape T, Shimizu KK, Keller B: The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nat Genet 2013, 45:1092-1096.
-
(2013)
Nat Genet
, vol.45
, pp. 1092-1096
-
-
Wicker, T.1
Oberhaensli, S.2
Parlange, F.3
Buchmann, J.P.4
Shatalina, M.5
Roffler, S.6
Ben-David, R.7
Doležel, J.8
Šimková, H.9
Schulze-Lefert, P.10
Spanu, P.D.11
Bruggmann, R.12
Amselem, J.13
Quesneville, H.14
Ver Loren Van Themaat, E.15
Paape, T.16
Shimizu, K.K.17
Keller, B.18
-
47
-
-
0038330375
-
Analysis of loss of pathogenicity mutants reveals that repeat-induced point mutations can occur in the Dothideomycete Leptosphaeria maculans
-
Idnurm A, Howlett BJ: Analysis of loss of pathogenicity mutants reveals that repeat-induced point mutations can occur in the Dothideomycete Leptosphaeria maculans. Fungal Genet Biol 2003, 39:31-37.
-
(2003)
Fungal Genet Biol
, vol.39
, pp. 31-37
-
-
Idnurm, A.1
Howlett, B.J.2
-
48
-
-
78751621346
-
Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetes
-
Clutterbuck AJ: Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetes. Fungal Genet Biol 2011, 48:306-326.
-
(2011)
Fungal Genet Biol
, vol.48
, pp. 306-326
-
-
Clutterbuck, A.J.1
-
49
-
-
0029894668
-
Methylation of DNA repeats of decreasing sizes in Ascobolus immersus
-
Goyon C, Barry C, Grégoire A, Faugeron G, Rossignol JL: Methylation of DNA repeats of decreasing sizes in Ascobolus immersus. Mol Cell Biol 1996, 16:3054-3065.
-
(1996)
Mol Cell Biol
, vol.16
, pp. 3054-3065
-
-
Goyon, C.1
Barry, C.2
Grégoire, A.3
Faugeron, G.4
Rossignol, J.L.5
-
50
-
-
21544481182
-
Gene silencing in filamentous fungi: RIP, MIP and quelling
-
Irelan JT, Selker EU: Gene silencing in filamentous fungi: RIP, MIP and quelling. J Genet 1996, 75:313-324.
-
(1996)
J Genet
, vol.75
, pp. 313-324
-
-
Irelan, J.T.1
Selker, E.U.2
-
51
-
-
77952487819
-
Jumping genes and epigenetics: Towards new species
-
Rebollo R, Horard B, Hubert B, Vieira C: Jumping genes and epigenetics: Towards new species. Gene 2010, 454:1-7.
-
(2010)
Gene
, vol.454
, pp. 1-7
-
-
Rebollo, R.1
Horard, B.2
Hubert, B.3
Vieira, C.4
-
52
-
-
84860513444
-
Migration patterns and changes in population biology associated with the worldwide spread of the oilseed rape pathogen Leptosphaeria maculans
-
Dilmaghani A, Gladieux P, Gout L, Giraud T, Brunner PC, Stachowiak A, Balesdent MH, Rouxel T: Migration patterns and changes in population biology associated with the worldwide spread of the oilseed rape pathogen Leptosphaeria maculans. Mol Ecol 2012, 21:2519-2533.
-
(2012)
Mol Ecol
, vol.21
, pp. 2519-2533
-
-
Dilmaghani, A.1
Gladieux, P.2
Gout, L.3
Giraud, T.4
Brunner, P.C.5
Stachowiak, A.6
Balesdent, M.H.7
Rouxel, T.8
-
53
-
-
84876804129
-
Clonal populations of Leptosphaeria maculans contaminating cabbage in Mexico
-
Dilmaghani A, Gout L, Moreno-Rico O, Dias JS, Coudard L, Balesdent MH, Rouxel T: Clonal populations of Leptosphaeria maculans contaminating cabbage in Mexico. Plant Pathology 2013, 62:520-532.
-
(2013)
Plant Pathology
, vol.62
, pp. 520-532
-
-
Dilmaghani, A.1
Gout, L.2
Moreno-Rico, O.3
Dias, J.S.4
Coudard, L.5
Balesdent, M.H.6
Rouxel, T.7
-
54
-
-
0344876091
-
Factors that affect the horizontal transfer of transposable elements
-
Silva JC, Loreto EL, Clark JB: Factors that affect the horizontal transfer of transposable elements. Curr Issues Mol Biol 2004, 6:57-71.
-
(2004)
Curr Issues Mol Biol
, vol.6
, pp. 57-71
-
-
Silva, J.C.1
Loreto, E.L.2
Clark, J.B.3
-
55
-
-
84872587448
-
Widespread horizontal transfer of retrotransposons
-
Walsh AM, Kortschak RD, Gardner MG, Bertozzia T, Adelsona DL: Widespread horizontal transfer of retrotransposons. Proc Natl Acad Sci U S A 2013, 15:1012-1016.
-
(2013)
Proc Natl Acad Sci U S A
, vol.15
, pp. 1012-1016
-
-
Walsh, A.M.1
Kortschak, R.D.2
Gardner, M.G.3
Bertozzia, T.4
Adelsona, D.L.5
-
56
-
-
44349148619
-
Revisiting horizontal transfer of transposable elements in Drosophila
-
Loreto EL, Carareto CM, Capy P: Revisiting horizontal transfer of transposable elements in Drosophila. Heredity 2008, 100:545-554.
-
(2008)
Heredity
, vol.100
, pp. 545-554
-
-
Loreto, E.L.1
Carareto, C.M.2
Capy, P.3
-
57
-
-
0141468761
-
Transposable elements in filamentous fungi
-
Daboussi MJ, Capy P: Transposable elements in filamentous fungi. Annu Rev Microbiol 2003, 57:275-299.
-
(2003)
Annu Rev Microbiol
, vol.57
, pp. 275-299
-
-
Daboussi, M.J.1
Capy, P.2
-
58
-
-
70849114093
-
The transposon Galileo generates natural chromosomal inversions in Drososphila by ectopic recombination
-
Delprat A, Negre B, Puig M, Ruiz A: The transposon Galileo generates natural chromosomal inversions in Drososphila by ectopic recombination. PLoS One 2009, 4:e7883.
-
(2009)
PLoS One
, vol.4
-
-
Delprat, A.1
Negre, B.2
Puig, M.3
Ruiz, A.4
-
59
-
-
66049098213
-
Recovering genome rearrangements in the mammalian phylogeny
-
Zhao H, Bourque G: Recovering genome rearrangements in the mammalian phylogeny. Genome Res 2009, 19:934-942.
-
(2009)
Genome Res
, vol.19
, pp. 934-942
-
-
Zhao, H.1
Bourque, G.2
-
60
-
-
33746576136
-
Emergence of a new disease as a result of interspecific virulence gene transfer
-
Friesen TL, Stukenbrock EH, Liu Z, Meinhardt S, Ling H, Faris JD, Rasmussen JB, Solomon PS, McDonald BA, Oliver RP: Emergence of a new disease as a result of interspecific virulence gene transfer. Nat Genet 2006, 38:953-956.
-
(2006)
Nat Genet
, vol.38
, pp. 953-956
-
-
Friesen, T.L.1
Stukenbrock, E.H.2
Liu, Z.3
Meinhardt, S.4
Ling, H.5
Faris, J.D.6
Rasmussen, J.B.7
Solomon, P.S.8
McDonald, B.A.9
Oliver, R.P.10
-
61
-
-
17444416686
-
A novel chemical signal from the "blackleg" fungus: beyond phytotoxins and phytoalexins
-
Pedras MSC, Taylor JL, Nakashima TT: A novel chemical signal from the "blackleg" fungus: beyond phytotoxins and phytoalexins. J Org Chem 1993, 58:4778-4780.
-
(1993)
J Org Chem
, vol.58
, pp. 4778-4780
-
-
Pedras, M.S.C.1
Taylor, J.L.2
Nakashima, T.T.3
-
62
-
-
79960957443
-
Multiple translocation of the AVR-Pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species
-
Chuma I, Isobe C, Hotta Y, Ibaragi K, Futamata N, Kusaba M, Yoshida K, Terauchi R, Fujita Y, Nakayashiki H, Valent B, Tosa Y: Multiple translocation of the AVR-Pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species. PLoS Pathog 2011, 7:e1002147.
-
(2011)
PLoS Pathog
, vol.7
-
-
Chuma, I.1
Isobe, C.2
Hotta, Y.3
Ibaragi, K.4
Futamata, N.5
Kusaba, M.6
Yoshida, K.7
Terauchi, R.8
Fujita, Y.9
Nakayashiki, H.10
Valent, B.11
Tosa, Y.12
-
63
-
-
0006022114
-
Variability in Leptosphaeria maculans (Desm.) Ces. et De Not., the cause of blackleg of rape
-
Saskatoon, Canada: University of Saskatchewan
-
Petrie GA: Variability in Leptosphaeria maculans (Desm.) Ces. et De Not., the cause of blackleg of rape. In PhD thesis. Saskatoon, Canada: University of Saskatchewan; 1969:215 pp.
-
(1969)
PhD thesis
, pp. 215
-
-
Petrie, G.A.1
-
64
-
-
20444379273
-
The stem canker (blackleg) fungus, Leptosphaeria maculans, enters the genomic era
-
Rouxel T, Balesdent MH: The stem canker (blackleg) fungus, Leptosphaeria maculans, enters the genomic era. Mol Plant Pathol 2005, 6:225-241.
-
(2005)
Mol Plant Pathol
, vol.6
, pp. 225-241
-
-
Rouxel, T.1
Balesdent, M.H.2
-
65
-
-
33748923331
-
Coexistence of related pathogen species on arable crops in space and time
-
Fitt BDL, Huang YJ, van den Bosch F, West JS: Coexistence of related pathogen species on arable crops in space and time. Annu Rev Phytopathol 2006, 44:163-182.
-
(2006)
Annu Rev Phytopathol
, vol.44
, pp. 163-182
-
-
Fitt, B.D.L.1
Huang, Y.J.2
van den Bosch, F.3
West, J.S.4
-
66
-
-
78649817356
-
Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana
-
Belstein MA, Nagalingum NS, Clements MD, Manchester SR, Matthews S: Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana. Proc Natl Acad Sci U S A 2010, 107:18724-18728.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 18724-18728
-
-
Belstein, M.A.1
Nagalingum, N.S.2
Clements, M.D.3
Manchester, S.R.4
Matthews, S.5
-
67
-
-
0029411311
-
The PWL host specificity gene family in the blast fungus Magnaporthe grisea
-
Kang S, Sweigard JA, Valent B: The PWL host specificity gene family in the blast fungus Magnaporthe grisea. Mol Plant Microbe Interact 1995, 8:939-948.
-
(1995)
Mol Plant Microbe Interact
, vol.8
, pp. 939-948
-
-
Kang, S.1
Sweigard, J.A.2
Valent, B.3
-
68
-
-
22144439059
-
Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice
-
Couch BC, Fudal I, Lebrun MH, Tharreau D, Valent B, van Kim P, Nottéghem JL, Kohn LM: Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice. Genetics 2005, 170:613-630.
-
(2005)
Genetics
, vol.170
, pp. 613-630
-
-
Couch, B.C.1
Fudal, I.2
Lebrun, M.H.3
Tharreau, D.4
Valent, B.5
van Kim, P.6
Nottéghem, J.L.7
Kohn, L.M.8
-
69
-
-
0035114686
-
Epidemiology and management of Leptosphaeria maculans (phoma stem canker) on oilseed rape in Australia, Canada and Europe
-
West JS, Kharbanda PD, Barbetti MJ, Fitt BDL: Epidemiology and management of Leptosphaeria maculans (phoma stem canker) on oilseed rape in Australia, Canada and Europe. Plant Pathology 2001, 50:10-27.
-
(2001)
Plant Pathology
, vol.50
, pp. 10-27
-
-
West, J.S.1
Kharbanda, P.D.2
Barbetti, M.J.3
Fitt, B.D.L.4
-
70
-
-
70449483687
-
Identification of Leptosphaeria biglobosa 'canadensis' on Brassica juncea stubble from northern New South Wales, Australia
-
Van de Wouw AP, Thomas VL, Cozijnsen AJ, Marcroft SJ, Salisbury PA, Howlett BJ: Identification of Leptosphaeria biglobosa 'canadensis' on Brassica juncea stubble from northern New South Wales, Australia. Australas Plant Dis Notes 2008, 3:124-128.
-
(2008)
Australas Plant Dis Notes
, vol.3
, pp. 124-128
-
-
Van de Wouw, A.P.1
Thomas, V.L.2
Cozijnsen, A.J.3
Marcroft, S.J.4
Salisbury, P.A.5
Howlett, B.J.6
-
71
-
-
40849121125
-
Occurrence of a new subclade of Leptosphaeria biglobosa in Western Australia
-
Vincenot L, Balesdent MH, Li H, Barbetti MJ, Sivasithamparam K, Gout L, Rouxel T: Occurrence of a new subclade of Leptosphaeria biglobosa in Western Australia. Phytopathology 2008, 98:321-329.
-
(2008)
Phytopathology
, vol.98
, pp. 321-329
-
-
Vincenot, L.1
Balesdent, M.H.2
Li, H.3
Barbetti, M.J.4
Sivasithamparam, K.5
Gout, L.6
Rouxel, T.7
-
72
-
-
84897438553
-
Epigenetic control of effector gene expression in the plant pathogenic fungus Leptosphaeria maculans
-
Soyer JL, El Ghalid M, Glaser N, Ollivier B, Linglin J, Grandaubert J, Balesdent MH, Connolly LR, Freitag M, Rouxel T, Fudal I: Epigenetic control of effector gene expression in the plant pathogenic fungus Leptosphaeria maculans. PLoS Genet 2014, 10:e1004227.
-
(2014)
PLoS Genet
, vol.10
-
-
Soyer, J.L.1
El Ghalid, M.2
Glaser, N.3
Ollivier, B.4
Linglin, J.5
Grandaubert, J.6
Balesdent, M.H.7
Connolly, L.R.8
Freitag, M.9
Rouxel, T.10
Fudal, I.11
-
73
-
-
79960857750
-
Transcriptional programming and functional interactions within the Phytophthora sojae RXLR effector repertoire
-
Wang Q, Han C, Ferreira AO, Yu X, Ye W, Tripathy S, Kale SD, Gu B, Sheng Y, Sui Y, Wang X, Zhang Z, Cheng B, Dong S, Shan W, Zheng X, Dou D, Tyler BM, Wang Y: Transcriptional programming and functional interactions within the Phytophthora sojae RXLR effector repertoire. Plant Cell 2011, 23:2064-2086.
-
(2011)
Plant Cell
, vol.23
, pp. 2064-2086
-
-
Wang, Q.1
Han, C.2
Ferreira, A.O.3
Yu, X.4
Ye, W.5
Tripathy, S.6
Kale, S.D.7
Gu, B.8
Sheng, Y.9
Sui, Y.10
Wang, X.11
Zhang, Z.12
Cheng, B.13
Dong, S.14
Shan, W.15
Zheng, X.16
Dou, D.17
Tyler, B.M.18
Wang, Y.19
-
74
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E: Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008, 18:821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
75
-
-
0034065724
-
Ab initio gene finding in Drosophila genomic DNA
-
Salamov AA, Solovyev VV: Ab initio gene finding in Drosophila genomic DNA. Genome Res 2000, 10:516-522.
-
(2000)
Genome Res
, vol.10
, pp. 516-522
-
-
Salamov, A.A.1
Solovyev, V.V.2
-
76
-
-
29144453390
-
Gene identification in novel eukaryotic genomes by self-training algorithm
-
Lomsadze A, Ter-Hovhannisyan V, Chernoff Y, Borodovsky M: Gene identification in novel eukaryotic genomes by self-training algorithm. Nucleic Acids Res 2005, 33:6494-6506.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6494-6506
-
-
Lomsadze, A.1
Ter-Hovhannisyan, V.2
Chernoff, Y.3
Borodovsky, M.4
-
77
-
-
66249109710
-
Genome Annotation in Plants and Fungi: EuGene as a model platform
-
Foissac S, Gouzy J, Rombauts S, Mathe C, Amselem J, Sterck L, de Peer YV, Rouze P, Schiex T: Genome Annotation in Plants and Fungi: EuGene as a model platform. Current Bioinformatics 2008, 3:87-97.
-
(2008)
Current Bioinformatics
, vol.3
, pp. 87-97
-
-
Foissac, S.1
Gouzy, J.2
Rombauts, S.3
Mathe, C.4
Amselem, J.5
Sterck, L.6
de Peer, Y.V.7
Rouze, P.8
Schiex, T.9
-
79
-
-
0142119484
-
Viewing and annotating sequence data with Artemis
-
Berriman M, Rutherford K: Viewing and annotating sequence data with Artemis. Brief Bioinform 2003, 4:124-132.
-
(2003)
Brief Bioinform
, vol.4
, pp. 124-132
-
-
Berriman, M.1
Rutherford, K.2
-
80
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
81
-
-
23144458473
-
InterProScan: protein domains identifier
-
Quevillon E, Silventoinen V, Pillai S, Harte N, Mulder N, Apweiler R, Lopez R: InterProScan: protein domains identifier. Nucleic Acids Res 2005, 33:W116-W120.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. W116-W120
-
-
Quevillon, E.1
Silventoinen, V.2
Pillai, S.3
Harte, N.4
Mulder, N.5
Apweiler, R.6
Lopez, R.7
-
82
-
-
84858602406
-
InterPro in 2011: new developments in the family and domain prediction database
-
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, Duquenne L, Finn RD, Fraser M, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, et al: InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res 2012, 40:D306-D312.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D306-D312
-
-
Hunter, S.1
Jones, P.2
Mitchell, A.3
Apweiler, R.4
Attwood, T.K.5
Bateman, A.6
Bernard, T.7
Binns, D.8
Bork, P.9
Burge, S.10
de Castro, E.11
Coggill, P.12
Corbett, M.13
Das, U.14
Daugherty, L.15
Duquenne, L.16
Finn, R.D.17
Fraser, M.18
Gough, J.19
Haft, D.20
Hulo, N.21
Kahn, D.22
Kelly, E.23
Letunic, I.24
Lonsdale, D.25
Lopez, R.26
Madera, M.27
Maslen, J.28
McAnulla, C.29
McDowall, J.30
more..
-
83
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
Bendtsen JD, Nielsen H, von Heijne G, Brunak S: Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 2004, 340:783-795.
-
(2004)
J Mol Biol
, vol.340
, pp. 783-795
-
-
Bendtsen, J.D.1
Nielsen, H.2
von Heijne, G.3
Brunak, S.4
-
84
-
-
0034697980
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
-
Emanuelsson O, Nielsen H, Brunak S, von Heijne G: Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 2000, 300:1005-1016.
-
(2000)
J Mol Biol
, vol.300
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
von Heijne, G.4
-
85
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden markov model: application to complete genomes
-
Krogh A, Larsson B, von Heijne G, Sonnhammer ELL: Predicting transmembrane protein topology with a hidden markov model: application to complete genomes. J Mol Biol 2001, 305:567-580.
-
(2001)
J Mol Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.L.4
-
86
-
-
79551624472
-
Considering transposable element diversification in de novo annotation approaches
-
Flutre T, Duprat E, Feuillet C, Quesneville H: Considering transposable element diversification in de novo annotation approaches. Plos One 2011, 6:e16526.
-
(2011)
Plos One
, vol.6
-
-
Flutre, T.1
Duprat, E.2
Feuillet, C.3
Quesneville, H.4
-
87
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J: Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 2005, 110:462-467.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
88
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker T, Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell A, Leroy P, Morgante M, Panaud O, Paux E, SanMiguel P, Schulman AH: A unified classification system for eukaryotic transposable elements. Nat Rev Genet 2007, 8:973-982.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
Bennetzen, J.L.4
Capy, P.5
Chalhoub, B.6
Flavell, A.7
Leroy, P.8
Morgante, M.9
Panaud, O.10
Paux, E.11
SanMiguel, P.12
Schulman, A.H.13
-
89
-
-
42349111552
-
A universal classification of eukaryotic transposable elements implemented in Repbase
-
Kapitonov VV, Jurka J: A universal classification of eukaryotic transposable elements implemented in Repbase. Nat Rev Genet 2008, 9:411-412.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 411-412
-
-
Kapitonov, V.V.1
Jurka, J.2
-
90
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG: Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
91
-
-
0034201441
-
EMBOSS: The European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A: EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet 2000, 16:276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
92
-
-
78651285748
-
CDD: a Conserved Domain Database for the functional annotation of proteins
-
Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Tasneem A, Thanki N, Yamashita RA, Zhang D, Zhang N, Bryant SH: CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res 2009, 39:D225-D229.
-
(2009)
Nucleic Acids Res
, vol.39
, pp. D225-D229
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Chitsaz, F.3
Derbyshire, M.K.4
DeWeese-Scott, C.5
Fong, J.H.6
Geer, L.Y.7
Geer, R.C.8
Gonzales, N.R.9
Gwadz, M.10
He, S.11
Hurwitz, D.I.12
Jackson, J.D.13
Ke, Z.14
Lanczycki, C.J.15
Liebert, C.A.16
Liu, C.17
Lu, F.18
Lu, S.19
Marchler, G.H.20
Mullokandov, M.21
Song, J.S.22
Tasneem, A.23
Thanki, N.24
Yamashita, R.A.25
Zhang, D.26
Zhang, N.27
Bryant, S.H.28
more..
-
93
-
-
58249097202
-
RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences
-
Hane JK, Oliver RP: RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences. BMC Bioinformatics 2008, 9:478.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 478
-
-
Hane, J.K.1
Oliver, R.P.2
-
95
-
-
36549051577
-
Aligning multiple whole genomes with Mercator and MAVID
-
Dewey CN: Aligning multiple whole genomes with Mercator and MAVID. Methods Mol Bio 2007, 395:221-236.
-
(2007)
Methods Mol Bio
, vol.395
, pp. 221-236
-
-
Dewey, C.N.1
-
96
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price MN, Dehal PS, Arkin AP: FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One 2010, 5:e9490.
-
(2010)
PLoS One
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
97
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
Talavera G, Castresana J: Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 2007, 56:564-577.
-
(2007)
Syst Biol
, vol.56
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
98
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and the BEAST 1.7
-
Drummond AJ, Suchard MA, Xie D, Rambaut A: Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 2012, 29:1969-1973.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
99
-
-
0037314098
-
r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
-
Sanderson MJ: r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 2003, 19:301-302.
-
(2003)
Bioinformatics
, vol.19
, pp. 301-302
-
-
Sanderson, M.J.1
-
100
-
-
84862977387
-
The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
-
Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, Martínez AT, Otillar R, Spatafora JW, Yadav JS, Aerts A, Benoit I, Boyd A, Carlson A, Copeland A, Coutinho PM, de Vries RP, Ferreira P, Findley K, Foster B, Gaskell J, Glotzer D, Górecki P, Heitman J, Hesse C, Hori C, Igarashi K, Jurgens JA, Kallen N, Kersten P, et al: The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 2012, 336:1715-1719.
-
(2012)
Science
, vol.336
, pp. 1715-1719
-
-
Floudas, D.1
Binder, M.2
Riley, R.3
Barry, K.4
Blanchette, R.A.5
Henrissat, B.6
Martínez, A.T.7
Otillar, R.8
Spatafora, J.W.9
Yadav, J.S.10
Aerts, A.11
Benoit, I.12
Boyd, A.13
Carlson, A.14
Copeland, A.15
Coutinho, P.M.16
de Vries, R.P.17
Ferreira, P.18
Findley, K.19
Foster, B.20
Gaskell, J.21
Glotzer, D.22
Górecki, P.23
Heitman, J.24
Hesse, C.25
Hori, C.26
Igarashi, K.27
Jurgens, J.A.28
Kallen, N.29
Kersten, P.30
more..
-
101
-
-
80053205766
-
Rock-inhabiting fungi originated during periods of dry climate in the late Devonian and middle Triassic
-
Gueidan C, Ruibal C, de Hoog GS, Schneider H: Rock-inhabiting fungi originated during periods of dry climate in the late Devonian and middle Triassic. Fungal Biol 2011, 115:987-996.
-
(2011)
Fungal Biol
, vol.115
, pp. 987-996
-
-
Gueidan, C.1
Ruibal, C.2
de Hoog, G.S.3
Schneider, H.4
-
103
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP: A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19:185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
104
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP: Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003, 4:249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
105
-
-
77957243027
-
ANAIS: analysis of NimbleGen arrays interface
-
Simon A, Biot E: ANAIS: analysis of NimbleGen arrays interface. Bioinformatics 2010, 26:2468-2469.
-
(2010)
Bioinformatics
, vol.26
, pp. 2468-2469
-
-
Simon, A.1
Biot, E.2
-
106
-
-
62349099890
-
Dual control of avirulence in Leptosphaeria maculans towards a Brassica napus cultivar with sylvestris-derived resistance suggests involvement of two resistance genes
-
Van de Wouw AP, Marcroft SJ, Barbetti MJ, Hua L, Salisbury PA, Gout L, Rouxel T, Howlett BJ, Balesdent MH: Dual control of avirulence in Leptosphaeria maculans towards a Brassica napus cultivar with sylvestris-derived resistance suggests involvement of two resistance genes. Plant Pathology 2009, 58:305-313.
-
(2009)
Plant Pathology
, vol.58
, pp. 305-313
-
-
Van de Wouw, A.P.1
Marcroft, S.J.2
Barbetti, M.J.3
Hua, L.4
Salisbury, P.A.5
Gout, L.6
Rouxel, T.7
Howlett, B.J.8
Balesdent, M.H.9
-
107
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL: TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25:1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
108
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L: Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotech 2010, 28:511-515.
-
(2010)
Nat Biotech
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
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