-
1
-
-
84902324667
-
Global analysis of p53-regulated transcription identifies its direct targets and unexpected regulatory mechanisms
-
Allen, M.A., Andrysik, Z., Dengler, V.L., Mellert, H.S., Guarnieri, A., Freeman, J.A., Sullivan, K.D., Galbraith, M.D., Luo, X., Kraus, W.L., et al. Global analysis of p53-regulated transcription identifies its direct targets and unexpected regulatory mechanisms. eLife, 3, 2014, e02200.
-
(2014)
eLife
, vol.3
, pp. e02200
-
-
Allen, M.A.1
Andrysik, Z.2
Dengler, V.L.3
Mellert, H.S.4
Guarnieri, A.5
Freeman, J.A.6
Sullivan, K.D.7
Galbraith, M.D.8
Luo, X.9
Kraus, W.L.10
-
2
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S., Huber, W., Differential expression analysis for sequence count data. Genome Biol., 11, 2010, R106.
-
(2010)
Genome Biol.
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
3
-
-
84903514856
-
Concerted action of Nrf2-ARE pathway, MRN complex, HMGB1 and inflammatory cytokines - implication in modification of radiation damage
-
Anuranjani, N., Bala, M., Concerted action of Nrf2-ARE pathway, MRN complex, HMGB1 and inflammatory cytokines - implication in modification of radiation damage. Redox Biol. 2 (2014), 832–846.
-
(2014)
Redox Biol.
, vol.2
, pp. 832-846
-
-
Anuranjani, N.1
Bala, M.2
-
4
-
-
0032508504
-
Enhanced phosphorylation of p53 by ATM in response to DNA damage
-
Banin, S., Moyal, L., Shieh, S., Taya, Y., Anderson, C.W., Chessa, L., Smorodinsky, N.I., Prives, C., Reiss, Y., Shiloh, Y., Ziv, Y., Enhanced phosphorylation of p53 by ATM in response to DNA damage. Science 281 (1998), 1674–1677.
-
(1998)
Science
, vol.281
, pp. 1674-1677
-
-
Banin, S.1
Moyal, L.2
Shieh, S.3
Taya, Y.4
Anderson, C.W.5
Chessa, L.6
Smorodinsky, N.I.7
Prives, C.8
Reiss, Y.9
Shiloh, Y.10
Ziv, Y.11
-
5
-
-
84908547604
-
jvenn: an interactive Venn diagram viewer
-
Bardou, P., Mariette, J., Escudié, F., Djemiel, C., Klopp, C., jvenn: an interactive Venn diagram viewer. BMC Bioinformatics, 15, 2014, 293.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 293
-
-
Bardou, P.1
Mariette, J.2
Escudié, F.3
Djemiel, C.4
Klopp, C.5
-
6
-
-
78650210727
-
Bcl-6 and NF-kappaB cistromes mediate opposing regulation of the innate immune response
-
Barish, G.D., Yu, R.T., Karunasiri, M., Ocampo, C.B., Dixon, J., Benner, C., Dent, A.L., Tangirala, R.K., Evans, R.M., Bcl-6 and NF-kappaB cistromes mediate opposing regulation of the innate immune response. Genes Dev. 24 (2010), 2760–2765.
-
(2010)
Genes Dev.
, vol.24
, pp. 2760-2765
-
-
Barish, G.D.1
Yu, R.T.2
Karunasiri, M.3
Ocampo, C.B.4
Dixon, J.5
Benner, C.6
Dent, A.L.7
Tangirala, R.K.8
Evans, R.M.9
-
7
-
-
84879655699
-
Gamma rays induce a p53-independent mitochondrial biogenesis that is counter-regulated by HIF1α
-
Bartoletti-Stella, A., Mariani, E., Kurelac, I., Maresca, A., Caratozzolo, M.F., Iommarini, L., Carelli, V., Eusebi, L.H., Guido, A., Cenacchi, G., et al. Gamma rays induce a p53-independent mitochondrial biogenesis that is counter-regulated by HIF1α. Cell Death Dis., 4, 2013, e663.
-
(2013)
Cell Death Dis.
, vol.4
, pp. e663
-
-
Bartoletti-Stella, A.1
Mariani, E.2
Kurelac, I.3
Maresca, A.4
Caratozzolo, M.F.5
Iommarini, L.6
Carelli, V.7
Eusebi, L.H.8
Guido, A.9
Cenacchi, G.10
-
8
-
-
79957547966
-
Beyond ATM: the protein kinase landscape of the DNA damage response
-
Bensimon, A., Aebersold, R., Shiloh, Y., Beyond ATM: the protein kinase landscape of the DNA damage response. FEBS Lett. 585 (2011), 1625–1639.
-
(2011)
FEBS Lett.
, vol.585
, pp. 1625-1639
-
-
Bensimon, A.1
Aebersold, R.2
Shiloh, Y.3
-
9
-
-
84864251757
-
Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions
-
Bhatt, D.M., Pandya-Jones, A., Tong, A.-J., Barozzi, I., Lissner, M.M., Natoli, G., Black, D.L., Smale, S.T., Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions. Cell 150 (2012), 279–290.
-
(2012)
Cell
, vol.150
, pp. 279-290
-
-
Bhatt, D.M.1
Pandya-Jones, A.2
Tong, A.-J.3
Barozzi, I.4
Lissner, M.M.5
Natoli, G.6
Black, D.L.7
Smale, S.T.8
-
10
-
-
48449101433
-
p53 target genes sestrin1 and sestrin2 connect genotoxic stress and mTOR signaling
-
Budanov, A.V., Karin, M., p53 target genes sestrin1 and sestrin2 connect genotoxic stress and mTOR signaling. Cell 134 (2008), 451–460.
-
(2008)
Cell
, vol.134
, pp. 451-460
-
-
Budanov, A.V.1
Karin, M.2
-
11
-
-
84941877893
-
The many interactions between the innate immune system and the response to radiation
-
Candéias, S.M., Testard, I., The many interactions between the innate immune system and the response to radiation. Cancer Lett. 368 (2015), 173–178.
-
(2015)
Cancer Lett.
, vol.368
, pp. 173-178
-
-
Candéias, S.M.1
Testard, I.2
-
12
-
-
0032508608
-
Activation of the ATM kinase by ionizing radiation and phosphorylation of p53
-
Canman, C.E., Lim, D.S., Cimprich, K.A., Taya, Y., Tamai, K., Sakaguchi, K., Appella, E., Kastan, M.B., Siliciano, J.D., Activation of the ATM kinase by ionizing radiation and phosphorylation of p53. Science 281 (1998), 1677–1679.
-
(1998)
Science
, vol.281
, pp. 1677-1679
-
-
Canman, C.E.1
Lim, D.S.2
Cimprich, K.A.3
Taya, Y.4
Tamai, K.5
Sakaguchi, K.6
Appella, E.7
Kastan, M.B.8
Siliciano, J.D.9
-
13
-
-
0030451213
-
NRF2, a member of the NFE2 family of transcription factors, is not essential for murine erythropoiesis, growth, and development
-
Chan, K., Lu, R., Chang, J.C., Kan, Y.W., NRF2, a member of the NFE2 family of transcription factors, is not essential for murine erythropoiesis, growth, and development. Proc. Natl. Acad. Sci. USA 93 (1996), 13943–13948.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 13943-13948
-
-
Chan, K.1
Lu, R.2
Chang, J.C.3
Kan, Y.W.4
-
14
-
-
0037317840
-
Inhibiting the p53-MDM2 interaction: an important target for cancer therapy
-
Chène, P., Inhibiting the p53-MDM2 interaction: an important target for cancer therapy. Nat. Rev. Cancer 3 (2003), 102–109.
-
(2003)
Nat. Rev. Cancer
, vol.3
, pp. 102-109
-
-
Chène, P.1
-
15
-
-
84937763934
-
Innate immune recognition of DNA: A recent history
-
Dempsey, A., Bowie, A.G., Innate immune recognition of DNA: A recent history. Virology 479–480 (2015), 146–152.
-
(2015)
Virology
, vol.479-480
, pp. 146-152
-
-
Dempsey, A.1
Bowie, A.G.2
-
16
-
-
0028978183
-
Mice lacking p21CIP1/WAF1 undergo normal development, but are defective in G1 checkpoint control
-
Deng, C., Zhang, P., Harper, J.W., Elledge, S.J., Leder, P., Mice lacking p21CIP1/WAF1 undergo normal development, but are defective in G1 checkpoint control. Cell 82 (1995), 675–684.
-
(1995)
Cell
, vol.82
, pp. 675-684
-
-
Deng, C.1
Zhang, P.2
Harper, J.W.3
Elledge, S.J.4
Leder, P.5
-
17
-
-
84924420942
-
Relationship between irradiation-induced neuro-inflammatory environments and impaired cognitive function in the developing brain of mice
-
Dong, X., Luo, M., Huang, G., Zhang, J., Tong, F., Cheng, Y., Cai, Q., Dong, J., Wu, G., Cheng, J., Relationship between irradiation-induced neuro-inflammatory environments and impaired cognitive function in the developing brain of mice. Int. J. Radiat. Biol. 91 (2015), 224–239.
-
(2015)
Int. J. Radiat. Biol.
, vol.91
, pp. 224-239
-
-
Dong, X.1
Luo, M.2
Huang, G.3
Zhang, J.4
Tong, F.5
Cheng, Y.6
Cai, Q.7
Dong, J.8
Wu, G.9
Cheng, J.10
-
18
-
-
84875224757
-
DNA-PK is a DNA sensor for IRF-3-dependent innate immunity
-
Ferguson, B.J., Mansur, D.S., Peters, N.E., Ren, H., Smith, G.L., DNA-PK is a DNA sensor for IRF-3-dependent innate immunity. eLife, 1, 2012, e00047.
-
(2012)
eLife
, vol.1
, pp. e00047
-
-
Ferguson, B.J.1
Mansur, D.S.2
Peters, N.E.3
Ren, H.4
Smith, G.L.5
-
19
-
-
84861355836
-
ATM phosphorylation of Mdm2 Ser394 regulates the amplitude and duration of the DNA damage response in mice
-
Gannon, H.S., Woda, B.A., Jones, S.N., ATM phosphorylation of Mdm2 Ser394 regulates the amplitude and duration of the DNA damage response in mice. Cancer Cell 21 (2012), 668–679.
-
(2012)
Cancer Cell
, vol.21
, pp. 668-679
-
-
Gannon, H.S.1
Woda, B.A.2
Jones, S.N.3
-
20
-
-
20144384882
-
Lost in transcription: p21 repression, mechanisms, and consequences
-
Gartel, A.L., Radhakrishnan, S.K., Lost in transcription: p21 repression, mechanisms, and consequences. Cancer Res. 65 (2005), 3980–3985.
-
(2005)
Cancer Res.
, vol.65
, pp. 3980-3985
-
-
Gartel, A.L.1
Radhakrishnan, S.K.2
-
21
-
-
33750523632
-
NF-kappaB activation by reactive oxygen species: fifteen years later
-
Gloire, G., Legrand-Poels, S., Piette, J., NF-kappaB activation by reactive oxygen species: fifteen years later. Biochem. Pharmacol. 72 (2006), 1493–1505.
-
(2006)
Biochem. Pharmacol.
, vol.72
, pp. 1493-1505
-
-
Gloire, G.1
Legrand-Poels, S.2
Piette, J.3
-
22
-
-
77955801615
-
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks, J., Nekrutenko, A., Taylor, J., Galaxy Team. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11, 2010, R86.
-
(2010)
Genome Biol.
, vol.11
, pp. R86
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
23
-
-
84857415635
-
Constitutive type I interferon modulates homeostatic balance through tonic signaling
-
Gough, D.J., Messina, N.L., Clarke, C.J.P., Johnstone, R.W., Levy, D.E., Constitutive type I interferon modulates homeostatic balance through tonic signaling. Immunity 36 (2012), 166–174.
-
(2012)
Immunity
, vol.36
, pp. 166-174
-
-
Gough, D.J.1
Messina, N.L.2
Clarke, C.J.P.3
Johnstone, R.W.4
Levy, D.E.5
-
24
-
-
84951860403
-
Whole-Lung Irradiation Results in Pulmonary Macrophage Alterations that are Subpopulation and Strain Specific
-
Groves, A.M., Johnston, C.J., Misra, R.S., Williams, J.P., Finkelstein, J.N., Whole-Lung Irradiation Results in Pulmonary Macrophage Alterations that are Subpopulation and Strain Specific. Radiat. Res. 184 (2015), 639–649.
-
(2015)
Radiat. Res.
, vol.184
, pp. 639-649
-
-
Groves, A.M.1
Johnston, C.J.2
Misra, R.S.3
Williams, J.P.4
Finkelstein, J.N.5
-
25
-
-
84922986861
-
DNA damage primes the type I interferon system via the cytosolic DNA sensor STING to promote anti-microbial innate immunity
-
Härtlova, A., Erttmann, S.F., Raffi, F.A., Schmalz, A.M., Resch, U., Anugula, S., Lienenklaus, S., Nilsson, L.M., Kröger, A., Nilsson, J.A., et al. DNA damage primes the type I interferon system via the cytosolic DNA sensor STING to promote anti-microbial innate immunity. Immunity 42 (2015), 332–343.
-
(2015)
Immunity
, vol.42
, pp. 332-343
-
-
Härtlova, A.1
Erttmann, S.F.2
Raffi, F.A.3
Schmalz, A.M.4
Resch, U.5
Anugula, S.6
Lienenklaus, S.7
Nilsson, L.M.8
Kröger, A.9
Nilsson, J.A.10
-
26
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz, S., Benner, C., Spann, N., Bertolino, E., Lin, Y.C., Laslo, P., Cheng, J.X., Murre, C., Singh, H., Glass, C.K., Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38 (2010), 576–589.
-
(2010)
Mol. Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
Cheng, J.X.7
Murre, C.8
Singh, H.9
Glass, C.K.10
-
27
-
-
84857099693
-
Acute radiation syndrome (ARS) - treatment of the reduced host defense
-
Heslet, L., Bay, C., Nepper-Christensen, S., Acute radiation syndrome (ARS) - treatment of the reduced host defense. Int. J. Gen. Med. 5 (2012), 105–115.
-
(2012)
Int. J. Gen. Med.
, vol.5
, pp. 105-115
-
-
Heslet, L.1
Bay, C.2
Nepper-Christensen, S.3
-
28
-
-
84994521851
-
UNITED STATES DEPARTMENT OF HEALTH AND HUMAN SERVICES BIODOSIMETRY AND RADIOLOGICAL/NUCLEAR MEDICAL COUNTERMEASURE PROGRAMS
-
Homer, M.J., Raulli, R., DiCarlo-Cohen, A.L., Esker, J., Hrdina, C., Maidment, B.W., Moyer, B., Rios, C., Macchiarini, F., Prasanna, P.G., Wathen, L., UNITED STATES DEPARTMENT OF HEALTH AND HUMAN SERVICES BIODOSIMETRY AND RADIOLOGICAL/NUCLEAR MEDICAL COUNTERMEASURE PROGRAMS. Radiat. Prot. Dosimetry 171 (2016), 85–98.
-
(2016)
Radiat. Prot. Dosimetry
, vol.171
, pp. 85-98
-
-
Homer, M.J.1
Raulli, R.2
DiCarlo-Cohen, A.L.3
Esker, J.4
Hrdina, C.5
Maidment, B.W.6
Moyer, B.7
Rios, C.8
Macchiarini, F.9
Prasanna, P.G.10
Wathen, L.11
-
29
-
-
59049083119
-
PH domain-only protein PHLDA3 is a p53-regulated repressor of Akt
-
Kawase, T., Ohki, R., Shibata, T., Tsutsumi, S., Kamimura, N., Inazawa, J., Ohta, T., Ichikawa, H., Aburatani, H., Tashiro, F., Taya, Y., PH domain-only protein PHLDA3 is a p53-regulated repressor of Akt. Cell 136 (2009), 535–550.
-
(2009)
Cell
, vol.136
, pp. 535-550
-
-
Kawase, T.1
Ohki, R.2
Shibata, T.3
Tsutsumi, S.4
Kamimura, N.5
Inazawa, J.6
Ohta, T.7
Ichikawa, H.8
Aburatani, H.9
Tashiro, F.10
Taya, Y.11
-
30
-
-
84877311822
-
Global genomic profiling reveals an extensive p53-regulated autophagy program contributing to key p53 responses
-
Kenzelmann Broz, D., Spano Mello, S., Bieging, K.T., Jiang, D., Dusek, R.L., Brady, C.A., Sidow, A., Attardi, L.D., Global genomic profiling reveals an extensive p53-regulated autophagy program contributing to key p53 responses. Genes Dev. 27 (2013), 1016–1031.
-
(2013)
Genes Dev.
, vol.27
, pp. 1016-1031
-
-
Kenzelmann Broz, D.1
Spano Mello, S.2
Bieging, K.T.3
Jiang, D.4
Dusek, R.L.5
Brady, C.A.6
Sidow, A.7
Attardi, L.D.8
-
31
-
-
0038037235
-
Induction of ATF3 by ionizing radiation is mediated via a signaling pathway that includes ATM, Nibrin1, stress-induced MAPkinases and ATF-2
-
Kool, J., Hamdi, M., Cornelissen-Steijger, P., van der Eb, A.J., Terleth, C., van Dam, H., Induction of ATF3 by ionizing radiation is mediated via a signaling pathway that includes ATM, Nibrin1, stress-induced MAPkinases and ATF-2. Oncogene 22 (2003), 4235–4242.
-
(2003)
Oncogene
, vol.22
, pp. 4235-4242
-
-
Kool, J.1
Hamdi, M.2
Cornelissen-Steijger, P.3
van der Eb, A.J.4
Terleth, C.5
van Dam, H.6
-
32
-
-
84962550498
-
Reactive Oxygen Species (ROS)-Activated ATM-Dependent Phosphorylation of Cytoplasmic Substrates Identified by Large-Scale Phosphoproteomics Screen
-
Kozlov, S.V., Waardenberg, A.J., Engholm-Keller, K., Arthur, J.W., Graham, M.E., Lavin, M., Reactive Oxygen Species (ROS)-Activated ATM-Dependent Phosphorylation of Cytoplasmic Substrates Identified by Large-Scale Phosphoproteomics Screen. Mol. Cell. Proteomics 15 (2016), 1032–1047.
-
(2016)
Mol. Cell. Proteomics
, vol.15
, pp. 1032-1047
-
-
Kozlov, S.V.1
Waardenberg, A.J.2
Engholm-Keller, K.3
Arthur, J.W.4
Graham, M.E.5
Lavin, M.6
-
33
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B., Salzberg, S.L., Fast gapped-read alignment with Bowtie 2. Nat. Methods 9 (2012), 357–359.
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
34
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M., Salzberg, S.L., Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, 2009, R25.
-
(2009)
Genome Biol.
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
35
-
-
0032497587
-
A novel ionizing radiation-induced signaling pathway that activates the transcription factor NF-kappaB
-
Lee, S.J., Dimtchev, A., Lavin, M.F., Dritschilo, A., Jung, M., A novel ionizing radiation-induced signaling pathway that activates the transcription factor NF-kappaB. Oncogene 17 (1998), 1821–1826.
-
(1998)
Oncogene
, vol.17
, pp. 1821-1826
-
-
Lee, S.J.1
Dimtchev, A.2
Lavin, M.F.3
Dritschilo, A.4
Jung, M.5
-
36
-
-
77956340995
-
Comprehensive comparative analysis of strand-specific RNA sequencing methods
-
Levin, J.Z., Yassour, M., Adiconis, X., Nusbaum, C., Thompson, D.A., Friedman, N., Gnirke, A., Regev, A., Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nat. Methods 7 (2010), 709–715.
-
(2010)
Nat. Methods
, vol.7
, pp. 709-715
-
-
Levin, J.Z.1
Yassour, M.2
Adiconis, X.3
Nusbaum, C.4
Thompson, D.A.5
Friedman, N.6
Gnirke, A.7
Regev, A.8
-
37
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25 (2009), 2078–2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
38
-
-
84924778328
-
Phosphorylation of innate immune adaptor proteins MAVS, STING, and TRIF induces IRF3 activation
-
Liu, S., Cai, X., Wu, J., Cong, Q., Chen, X., Li, T., Du, F., Ren, J., Wu, Y.-T., Grishin, N.V., Chen, Z.J., Phosphorylation of innate immune adaptor proteins MAVS, STING, and TRIF induces IRF3 activation. Science, 347, 2015, aaa2630.
-
(2015)
Science
, vol.347
, pp. aaa2630
-
-
Liu, S.1
Cai, X.2
Wu, J.3
Cong, Q.4
Chen, X.5
Li, T.6
Du, F.7
Ren, J.8
Wu, Y.-T.9
Grishin, N.V.10
Chen, Z.J.11
-
39
-
-
0035813198
-
Identification of a mouse thiamine transporter gene as a direct transcriptional target for p53
-
Lo, P.K., Chen, J.Y., Tang, P.P., Lin, J., Lin, C.H., Su, L.T., Wu, C.H., Chen, T.L., Yang, Y., Wang, F.F., Identification of a mouse thiamine transporter gene as a direct transcriptional target for p53. J. Biol. Chem. 276 (2001), 37186–37193.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 37186-37193
-
-
Lo, P.K.1
Chen, J.Y.2
Tang, P.P.3
Lin, J.4
Lin, C.H.5
Su, L.T.6
Wu, C.H.7
Chen, T.L.8
Yang, Y.9
Wang, F.F.10
-
40
-
-
0035950528
-
Inflammatory-type responses after exposure to ionizing radiation in vivo: a mechanism for radiation-induced bystander effects?
-
Lorimore, S.A., Coates, P.J., Scobie, G.E., Milne, G., Wright, E.G., Inflammatory-type responses after exposure to ionizing radiation in vivo: a mechanism for radiation-induced bystander effects?. Oncogene 20 (2001), 7085–7095.
-
(2001)
Oncogene
, vol.20
, pp. 7085-7095
-
-
Lorimore, S.A.1
Coates, P.J.2
Scobie, G.E.3
Milne, G.4
Wright, E.G.5
-
41
-
-
84863993915
-
Coordinate regulation of DNA damage and type I interferon responses imposes an antiviral state that attenuates mouse gammaherpesvirus type 68 replication in primary macrophages
-
Mboko, W.P., Mounce, B.C., Wood, B.M., Kulinski, J.M., Corbett, J.A., Tarakanova, V.L., Coordinate regulation of DNA damage and type I interferon responses imposes an antiviral state that attenuates mouse gammaherpesvirus type 68 replication in primary macrophages. J. Virol. 86 (2012), 6899–6912.
-
(2012)
J. Virol.
, vol.86
, pp. 6899-6912
-
-
Mboko, W.P.1
Mounce, B.C.2
Wood, B.M.3
Kulinski, J.M.4
Corbett, J.A.5
Tarakanova, V.L.6
-
42
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi, A., Williams, B.A., McCue, K., Schaeffer, L., Wold, B., Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5 (2008), 621–628.
-
(2008)
Nat. Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
43
-
-
0028070714
-
Functional role of type I and type II interferons in antiviral defense
-
Müller, U., Steinhoff, U., Reis, L.F., Hemmi, S., Pavlovic, J., Zinkernagel, R.M., Aguet, M., Functional role of type I and type II interferons in antiviral defense. Science 264 (1994), 1918–1921.
-
(1994)
Science
, vol.264
, pp. 1918-1921
-
-
Müller, U.1
Steinhoff, U.2
Reis, L.F.3
Hemmi, S.4
Pavlovic, J.5
Zinkernagel, R.M.6
Aguet, M.7
-
44
-
-
67649669255
-
A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling
-
Ramirez-Carrozzi, V.R., Braas, D., Bhatt, D.M., Cheng, C.S., Hong, C., Doty, K.R., Black, J.C., Hoffmann, A., Carey, M., Smale, S.T., A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling. Cell 138 (2009), 114–128.
-
(2009)
Cell
, vol.138
, pp. 114-128
-
-
Ramirez-Carrozzi, V.R.1
Braas, D.2
Bhatt, D.M.3
Cheng, C.S.4
Hong, C.5
Doty, K.R.6
Black, J.C.7
Hoffmann, A.8
Carey, M.9
Smale, S.T.10
-
45
-
-
80052139629
-
Transcriptional modulation induced by ionizing radiation: p53 remains a central player
-
Rashi-Elkeles, S., Elkon, R., Shavit, S., Lerenthal, Y., Linhart, C., Kupershtein, A., Amariglio, N., Rechavi, G., Shamir, R., Shiloh, Y., Transcriptional modulation induced by ionizing radiation: p53 remains a central player. Mol. Oncol. 5 (2011), 336–348.
-
(2011)
Mol. Oncol.
, vol.5
, pp. 336-348
-
-
Rashi-Elkeles, S.1
Elkon, R.2
Shavit, S.3
Lerenthal, Y.4
Linhart, C.5
Kupershtein, A.6
Amariglio, N.7
Rechavi, G.8
Shamir, R.9
Shiloh, Y.10
-
46
-
-
84962971719
-
New approaches to radiation protection
-
Rosen, E.M., Day, R., Singh, V.K., New approaches to radiation protection. Front. Oncol., 4, 2015, 381.
-
(2015)
Front. Oncol.
, vol.4
, pp. 381
-
-
Rosen, E.M.1
Day, R.2
Singh, V.K.3
-
47
-
-
85032035491
-
-
RStudio: Integrated Development for R. RStudio, Inc., Boston, MA URL
-
RStudio Team (2015). RStudio: Integrated Development for R. RStudio, Inc., Boston, MA URL http://www.rstudio.com/.
-
(2015)
-
-
RStudio Team1
-
48
-
-
84949266511
-
Redox Modulating NRF2: A Potential Mediator of Cancer Stem Cell Resistance
-
Ryoo, I.G., Lee, S.H., Kwak, M.-K., Redox Modulating NRF2: A Potential Mediator of Cancer Stem Cell Resistance. Oxid. Med. Cell. Longev., 2016, 2016, 2428153.
-
(2016)
Oxid. Med. Cell. Longev.
, vol.2016
, pp. 2428153
-
-
Ryoo, I.G.1
Lee, S.H.2
Kwak, M.-K.3
-
49
-
-
0029076291
-
Effect of liposome-mediated macrophage depletion on LPS-induced cytokine gene expression and radioprotection
-
Salkowski, C.A., Neta, R., Wynn, T.A., Strassmann, G., van Rooijen, N., Vogel, S.N., Effect of liposome-mediated macrophage depletion on LPS-induced cytokine gene expression and radioprotection. J. Immunol. 155 (1995), 3168–3179.
-
(1995)
J. Immunol.
, vol.155
, pp. 3168-3179
-
-
Salkowski, C.A.1
Neta, R.2
Wynn, T.A.3
Strassmann, G.4
van Rooijen, N.5
Vogel, S.N.6
-
50
-
-
0033680737
-
Distinct and essential roles of transcription factors IRF-3 and IRF-7 in response to viruses for IFN-alpha/beta gene induction
-
Sato, M., Suemori, H., Hata, N., Asagiri, M., Ogasawara, K., Nakao, K., Nakaya, T., Katsuki, M., Noguchi, S., Tanaka, N., Taniguchi, T., Distinct and essential roles of transcription factors IRF-3 and IRF-7 in response to viruses for IFN-alpha/beta gene induction. Immunity 13 (2000), 539–548.
-
(2000)
Immunity
, vol.13
, pp. 539-548
-
-
Sato, M.1
Suemori, H.2
Hata, N.3
Asagiri, M.4
Ogasawara, K.5
Nakao, K.6
Nakaya, T.7
Katsuki, M.8
Noguchi, S.9
Tanaka, N.10
Taniguchi, T.11
-
51
-
-
77950254153
-
Links between innate immunity and normal tissue radiobiology
-
Schaue, D., McBride, W.H., Links between innate immunity and normal tissue radiobiology. Radiat. Res. 173 (2010), 406–417.
-
(2010)
Radiat. Res.
, vol.173
, pp. 406-417
-
-
Schaue, D.1
McBride, W.H.2
-
52
-
-
84875423827
-
The ATM protein kinase: regulating the cellular response to genotoxic stress, and more
-
Shiloh, Y., Ziv, Y., The ATM protein kinase: regulating the cellular response to genotoxic stress, and more. Nat. Rev. Mol. Cell Biol. 14 (2013), 197–210.
-
(2013)
Nat. Rev. Mol. Cell Biol.
, vol.14
, pp. 197-210
-
-
Shiloh, Y.1
Ziv, Y.2
-
53
-
-
84887394492
-
Assessment of biodosimetry methods for a mass-casualty radiological incident: medical response and management considerations
-
Sullivan, J.M., Prasanna, P.G.S., Grace, M.B., Wathen, L.K., Wallace, R.L., Koerner, J.F., Coleman, C.N., Assessment of biodosimetry methods for a mass-casualty radiological incident: medical response and management considerations. Health Phys. 105 (2013), 540–554.
-
(2013)
Health Phys.
, vol.105
, pp. 540-554
-
-
Sullivan, J.M.1
Prasanna, P.G.S.2
Grace, M.B.3
Wathen, L.K.4
Wallace, R.L.5
Koerner, J.F.6
Coleman, C.N.7
-
54
-
-
42649114059
-
The IRF family transcription factors in immunity and oncogenesis
-
Tamura, T., Yanai, H., Savitsky, D., Taniguchi, T., The IRF family transcription factors in immunity and oncogenesis. Annu. Rev. Immunol. 26 (2008), 535–584.
-
(2008)
Annu. Rev. Immunol.
, vol.26
, pp. 535-584
-
-
Tamura, T.1
Yanai, H.2
Savitsky, D.3
Taniguchi, T.4
-
55
-
-
0037066686
-
ERK activation mediates cell cycle arrest and apoptosis after DNA damage independently of p53
-
Tang, D., Wu, D., Hirao, A., Lahti, J.M., Liu, L., Mazza, B., Kidd, V.J., Mak, T.W., Ingram, A.J., ERK activation mediates cell cycle arrest and apoptosis after DNA damage independently of p53. J. Biol. Chem. 277 (2002), 12710–12717.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 12710-12717
-
-
Tang, D.1
Wu, D.2
Hirao, A.3
Lahti, J.M.4
Liu, L.5
Mazza, B.6
Kidd, V.J.7
Mak, T.W.8
Ingram, A.J.9
-
56
-
-
84975784410
-
A Stringent Systems Approach Uncovers Gene-Specific Mechanisms Regulating Inflammation
-
Tong, A.-J., Liu, X., Thomas, B.J., Lissner, M.M., Baker, M.R., Senagolage, M.D., Allred, A.L., Barish, G.D., Smale, S.T., A Stringent Systems Approach Uncovers Gene-Specific Mechanisms Regulating Inflammation. Cell 165 (2016), 165–179.
-
(2016)
Cell
, vol.165
, pp. 165-179
-
-
Tong, A.-J.1
Liu, X.2
Thomas, B.J.3
Lissner, M.M.4
Baker, M.R.5
Senagolage, M.D.6
Allred, A.L.7
Barish, G.D.8
Smale, S.T.9
-
57
-
-
84926525215
-
Radiation and dual checkpoint blockade activate non-redundant immune mechanisms in cancer
-
Twyman-Saint Victor, C., Rech, A.J., Maity, A., Rengan, R., Pauken, K.E., Stelekati, E., Benci, J.L., Xu, B., Dada, H., Odorizzi, P.M., et al. Radiation and dual checkpoint blockade activate non-redundant immune mechanisms in cancer. Nature 520 (2015), 373–377.
-
(2015)
Nature
, vol.520
, pp. 373-377
-
-
Twyman-Saint Victor, C.1
Rech, A.J.2
Maity, A.3
Rengan, R.4
Pauken, K.E.5
Stelekati, E.6
Benci, J.L.7
Xu, B.8
Dada, H.9
Odorizzi, P.M.10
-
58
-
-
65349103899
-
Blinded by the Light: The Growing Complexity of p53
-
Vousden, K.H., Prives, C., Blinded by the Light: The Growing Complexity of p53. Cell 137 (2009), 413–431.
-
(2009)
Cell
, vol.137
, pp. 413-431
-
-
Vousden, K.H.1
Prives, C.2
-
59
-
-
77950193944
-
Animal models for medical countermeasures to radiation exposure
-
Williams, J.P., Brown, S.L., Georges, G.E., Hauer-Jensen, M., Hill, R.P., Huser, A.K., Kirsch, D.G., Macvittie, T.J., Mason, K.A., Medhora, M.M., et al. Animal models for medical countermeasures to radiation exposure. Radiat. Res. 173 (2010), 557–578.
-
(2010)
Radiat. Res.
, vol.173
, pp. 557-578
-
-
Williams, J.P.1
Brown, S.L.2
Georges, G.E.3
Hauer-Jensen, M.4
Hill, R.P.5
Huser, A.K.6
Kirsch, D.G.7
Macvittie, T.J.8
Mason, K.A.9
Medhora, M.M.10
-
60
-
-
33644538632
-
Molecular linkage between the kinase ATM and NF-kappaB signaling in response to genotoxic stimuli
-
Wu, Z.-H., Shi, Y., Tibbetts, R.S., Miyamoto, S., Molecular linkage between the kinase ATM and NF-kappaB signaling in response to genotoxic stimuli. Science 311 (2006), 1141–1146.
-
(2006)
Science
, vol.311
, pp. 1141-1146
-
-
Wu, Z.-H.1
Shi, Y.2
Tibbetts, R.S.3
Miyamoto, S.4
-
61
-
-
84921047960
-
Viral RNA detection by RIG-I-like receptors
-
Yoneyama, M., Onomoto, K., Jogi, M., Akaboshi, T., Fujita, T., Viral RNA detection by RIG-I-like receptors. Curr. Opin. Immunol. 32 (2015), 48–53.
-
(2015)
Curr. Opin. Immunol.
, vol.32
, pp. 48-53
-
-
Yoneyama, M.1
Onomoto, K.2
Jogi, M.3
Akaboshi, T.4
Fujita, T.5
-
62
-
-
67849114236
-
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes
-
W247-52
-
Zambelli, F., Pesole, G., Pavesi, G., Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes. Nucleic Acids Res., 37, 2009 W247-52.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Zambelli, F.1
Pesole, G.2
Pavesi, G.3
|