메뉴 건너뛰기




Volumn 6, Issue , 2017, Pages

Deconstruction of the ras switching cycle through saturation mutagenesis

Author keywords

[No Author keywords available]

Indexed keywords

CHLORAMPHENICOL ACETYLTRANSFERASE; GUANINE NUCLEOTIDE EXCHANGE FACTOR; GUANOSINE DIPHOSPHATE; GUANOSINE TRIPHOSPHATASE; RAS PROTEIN;

EID: 85026911695     PISSN: None     EISSN: 2050084X     Source Type: Journal    
DOI: 10.7554/eLife.27810     Document Type: Article
Times cited : (81)

References (91)
  • 4
    • 0037459344 scopus 로고    scopus 로고
    • Mechanisms of autoinhibition and STI-571/imatinib resistance revealed by mutagenesis of BCR-ABL
    • PMID: 12654249
    • Azam M, Latek RR, Daley GQ. 2003. Mechanisms of autoinhibition and STI-571/imatinib resistance revealed by mutagenesis of BCR-ABL. Cell 112:831-843. doi: 10.1016/S0092-8674(03)00190-9, PMID: 12654249
    • (2003) Cell , vol.112 , pp. 831-843
    • Azam, M.1    Latek, R.R.2    Daley, G.Q.3
  • 7
    • 68049100110 scopus 로고    scopus 로고
    • Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
    • PMID: 19561621
    • Bennett BD, Kimball EH, Gao M, Osterhout R, Van Dien SJ, Rabinowitz JD. 2009. Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli. Nature Chemical Biology 5:593-599. doi: 10.1038/nchembio.186, PMID: 19561621
    • (2009) Nature Chemical Biology , vol.5 , pp. 593-599
    • Bennett, B.D.1    Kimball, E.H.2    Gao, M.3    Osterhout, R.4    Van Dien, S.J.5    Rabinowitz, J.D.6
  • 9
    • 33845864966 scopus 로고    scopus 로고
    • Robustness-epistasis link shapes the fitness landscape of a randomly drifting protein
    • PMID: 17122770
    • Bershtein S, Segal M, Bekerman R, Tokuriki N, Tawfik DS. 2006. Robustness-epistasis link shapes the fitness landscape of a randomly drifting protein. Nature 444:929-932. doi: 10.1038/nature05385, PMID: 17122770
    • (2006) Nature , vol.444 , pp. 929-932
    • Bershtein, S.1    Segal, M.2    Bekerman, R.3    Tokuriki, N.4    Tawfik, D.S.5
  • 10
    • 84892909797 scopus 로고    scopus 로고
    • An automated approach to network features of protein structure ensembles
    • n/a-1416, PMID: 23934896
    • Bhattacharyya M, Bhat CR, Vishveshwara S. 2013. An automated approach to network features of protein structure ensembles. Protein Science 22:n/a-1416. doi: 10.1002/pro.2333, PMID: 23934896
    • (2013) Protein Science , vol.22
    • Bhattacharyya, M.1    Bhat, C.R.2    Vishveshwara, S.3
  • 11
    • 84953391561 scopus 로고    scopus 로고
    • Protein structure and function: Looking through the Network of Side-Chain interactions
    • PMID: 26412788
    • Bhattacharyya M, Ghosh S, Vishveshwara S. 2016. Protein structure and function: looking through the Network of Side-Chain interactions. Current Protein & Peptide Science 17:4-25. doi: 10.2174/1389203716666150923105727, PMID: 26412788
    • (2016) Current Protein & Peptide Science , vol.17 , pp. 4-25
    • Bhattacharyya, M.1    Ghosh, S.2    Vishveshwara, S.3
  • 12
    • 0032560850 scopus 로고    scopus 로고
    • The structural basis of the activation of ras by sos
    • PMID: 9690470
    • Boriack-Sjodin PA, Margarit SM, Bar-Sagi D, Kuriyan J. 1998. The structural basis of the activation of ras by sos. Nature 394:337-343. doi: 10.1038/28548, PMID: 9690470
    • (1998) Nature , vol.394 , pp. 337-343
    • Boriack-Sjodin, P.A.1    Margarit, S.M.2    Bar-Sagi, D.3    Kuriyan, J.4
  • 14
    • 0026026818 scopus 로고
    • The GTPase superfamily: Conserved structure and molecular mechanism
    • PMID: 1898771
    • Bourne HR, Sanders DA, McCormick F. 1991. The GTPase superfamily: conserved structure and molecular mechanism. Nature 349:117-127. doi: 10.1038/349117a0, PMID: 1898771
    • (1991) Nature , vol.349 , pp. 117-127
    • Bourne, H.R.1    Sanders, D.A.2    McCormick, F.3
  • 15
    • 76249090055 scopus 로고    scopus 로고
    • Selecting optimal second-line tyrosine kinase inhibitor therapy for chronic myeloid leukemia patients after imatinib failure: Does the BCR-ABL mutation status really matter?
    • PMID: 19880502
    • Branford S, Melo JV, Hughes TP. 2009. Selecting optimal second-line tyrosine kinase inhibitor therapy for chronic myeloid leukemia patients after imatinib failure: does the BCR-ABL mutation status really matter? Blood 114: 5426-5435. doi: 10.1182/blood-2009-08-215939, PMID: 19880502
    • (2009) Blood , vol.114 , pp. 5426-5435
    • Branford, S.1    Melo, J.V.2    Hughes, T.P.3
  • 16
    • 28444453011 scopus 로고    scopus 로고
    • A network representation of protein structures: Implications for protein stability
    • PMID: 16150969
    • Brinda KV, Vishveshwara S. 2005. A network representation of protein structures: implications for protein stability. Biophysical Journal 89:4159-4170. doi: 10.1529/biophysj.105.064485, PMID: 16150969
    • (2005) Biophysical Journal , vol.89 , pp. 4159-4170
    • Brinda, K.V.1    Vishveshwara, S.2
  • 17
    • 0028098798 scopus 로고
    • Direct, real-time measurement of rapid inorganic phosphate release using a novel fluorescent probe and its application to actomyosin subfragment 1 ATPase
    • PMID: 8031761
    • Brune M, Hunter JL, Corrie JE, Webb MR. 1994. Direct, real-time measurement of rapid inorganic phosphate release using a novel fluorescent probe and its application to actomyosin subfragment 1 ATPase. Biochemistry 33:8262-8271. doi: 10.1021/bi00193a013, PMID: 8031761
    • (1994) Biochemistry , vol.33 , pp. 8262-8271
    • Brune, M.1    Hunter, J.L.2    Corrie, J.E.3    Webb, M.R.4
  • 18
    • 77950397231 scopus 로고    scopus 로고
    • Allosteric modulation of ras positions Q61 for a direct role in catalysis
    • PMID: 20194776
    • Buhrman G, Holzapfel G, Fetics S, Mattos C. 2010. Allosteric modulation of ras positions Q61 for a direct role in catalysis. PNAS 107:4931-4936. doi: 10.1073/pnas.0912226107, PMID: 20194776
    • (2010) PNAS , vol.107 , pp. 4931-4936
    • Buhrman, G.1    Holzapfel, G.2    Fetics, S.3    Mattos, C.4
  • 20
    • 0027956706 scopus 로고
    • Critical binding and regulatory interactions between ras and raf occur through a small, stable N-terminal domain of raf and specific ras effector residues
    • PMID: 8035810
    • Chuang E, Barnard D, Hettich L, Zhang XF, Avruch J, Marshall MS. 1994. Critical binding and regulatory interactions between ras and raf occur through a small, stable N-terminal domain of raf and specific ras effector residues. Molecular and Cellular Biology 14:5318-5325. doi: 10.1128/MCB.14.8.5318, PMID: 8035810
    • (1994) Molecular and Cellular Biology , vol.14 , pp. 5318-5325
    • Chuang, E.1    Barnard, D.2    Hettich, L.3    Zhang, X.F.4    Avruch, J.5    Marshall, M.S.6
  • 21
    • 58249092059 scopus 로고    scopus 로고
    • Digital signaling and hysteresis characterize ras activation in lymphoid cells
    • PMID: 19167334
    • Das J, Ho M, Zikherman J, Govern C, Yang M, Weiss A, Chakraborty AK, Roose JP. 2009. Digital signaling and hysteresis characterize ras activation in lymphoid cells. Cell 136:337-351. doi: 10.1016/j.cell.2008.11.051, PMID: 19167334
    • (2009) Cell , vol.136 , pp. 337-351
    • Das, J.1    Ho, M.2    Zikherman, J.3    Govern, C.4    Yang, M.5    Weiss, A.6    Chakraborty, A.K.7    Roose, J.P.8
  • 22
    • 0030907304 scopus 로고    scopus 로고
    • Activation of prokaryotic transcription through arbitrary protein-protein contacts
    • PMID: 9121589
    • Dove SL, Joung JK, Hochschild A. 1997. Activation of prokaryotic transcription through arbitrary protein-protein contacts. Nature 386:627-630. doi: 10.1038/386627a0, PMID: 9121589
    • (1997) Nature , vol.386 , pp. 627-630
    • Dove, S.L.1    Joung, J.K.2    Hochschild, A.3
  • 27
  • 29
    • 84905217368 scopus 로고    scopus 로고
    • Deep mutational scanning: A new style of protein science
    • PMID: 25075907
    • Fowler DM, Fields S. 2014. Deep mutational scanning: a new style of protein science. Nature Methods 11:801-807. doi: 10.1038/nmeth.3027, PMID: 25075907
    • (2014) Nature Methods , vol.11 , pp. 801-807
    • Fowler, D.M.1    Fields, S.2
  • 30
    • 35648944297 scopus 로고    scopus 로고
    • A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis
    • PMID: 17898174
    • Ghosh A, Vishveshwara S. 2007. A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis. PNAS 104:15711-15716. doi: 10.1073/pnas.0704459104, PMID: 17898174
    • (2007) PNAS , vol.104 , pp. 15711-15716
    • Ghosh, A.1    Vishveshwara, S.2
  • 31
    • 44649199260 scopus 로고    scopus 로고
    • Mapping the nucleotide and isoform-dependent structural and dynamical features of ras proteins
    • PMID: 18547521
    • Gorfe AA, Grant BJ, McCammon JA. 2008. Mapping the nucleotide and isoform-dependent structural and dynamical features of ras proteins. Structure 16:885-896. doi: 10.1016/j.str.2008.03.009, PMID: 18547521
    • (2008) Structure , vol.16 , pp. 885-896
    • Gorfe, A.A.1    Grant, B.J.2    McCammon, J.A.3
  • 32
    • 63549096871 scopus 로고    scopus 로고
    • Ras conformational switching: Simulating nucleotide-dependent conformational transitions with accelerated molecular dynamics
    • PMID: 19300489
    • Grant BJ, Gorfe AA, McCammon JA. 2009. Ras conformational switching: simulating nucleotide-dependent conformational transitions with accelerated molecular dynamics. PLoS Computational Biology 5:e1000325. doi: 10.1371/journal.pcbi.1000325, PMID: 19300489
    • (2009) Plos Computational Biology , vol.5
    • Grant, B.J.1    Gorfe, A.A.2    McCammon, J.A.3
  • 35
    • 84964345721 scopus 로고    scopus 로고
    • RAS isoforms and mutations in Cancer at a glance
    • PMID: 26985062
    • Hobbs GA, Der CJ, Rossman KL. 2016. RAS isoforms and mutations in Cancer at a glance. Journal of Cell Science 129:1287-1292. doi: 10.1242/jcs.182873, PMID: 26985062
    • (2016) Journal of Cell Science , vol.129 , pp. 1287-1292
    • Hobbs, G.A.1    Der, C.J.2    Rossman, K.L.3
  • 36
    • 84864720673 scopus 로고    scopus 로고
    • Shift in the equilibrium between on and off states of the allosteric switch in Ras-GppNHp affected by small molecules and bulk solvent composition
    • PMID: 22845804
    • Holzapfel G, Buhrman G, Mattos C. 2012. Shift in the equilibrium between on and off states of the allosteric switch in Ras-GppNHp affected by small molecules and bulk solvent composition. Biochemistry 51:6114-6126. doi: 10.1021/bi300509j, PMID: 22845804
    • (2012) Biochemistry , vol.51 , pp. 6114-6126
    • Holzapfel, G.1    Buhrman, G.2    Mattos, C.3
  • 40
    • 85026737364 scopus 로고    scopus 로고
    • The small GTPases K-Ras, N-Ras and H-Ras have distinct biochemical properties determined by allosteric effects
    • M117.778886, PMID: 28630043
    • Johnson CW, Reid D, Parker JA, Salter S, Knihtila R, Kuzmic P, Mattos C. 2017. The small GTPases K-Ras, N-Ras and H-Ras have distinct biochemical properties determined by allosteric effects. Journal of Biological Chemistry:jbc.M117.778886. doi: 10.1074/jbc.M117.778886, PMID: 28630043
    • (2017) Journal of Biological Chemistry:Jbc
    • Johnson, C.W.1    Reid, D.2    Parker, J.A.3    Salter, S.4    Knihtila, R.5    Kuzmic, P.6    Mattos, C.7
  • 41
    • 84896293907 scopus 로고    scopus 로고
    • A universal cloning method based on yeast homologous recombination that is simple, efficient, and versatile
    • PMID: 24418681
    • Joska TM, Mashruwala A, Boyd JM, Belden WJ. 2014. A universal cloning method based on yeast homologous recombination that is simple, efficient, and versatile. Journal of Microbiological Methods 100:46-51. doi: 10.1016/j.mimet.2013.11.013, PMID: 24418681
    • (2014) Journal of Microbiological Methods , vol.100 , pp. 46-51
    • Joska, T.M.1    Mashruwala, A.2    Boyd, J.M.3    Belden, W.J.4
  • 42
    • 0034691202 scopus 로고    scopus 로고
    • A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions
    • PMID: 10852947
    • Joung JK, Ramm EI, Pabo CO. 2000. A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions. PNAS 97:7382-7387. doi: 10.1073/pnas.110149297, PMID: 10852947
    • (2000) PNAS , vol.97 , pp. 7382-7387
    • Joung, J.K.1    Ramm, E.I.2    Pabo, C.O.3
  • 43
    • 76449099287 scopus 로고    scopus 로고
    • XDS. Acta Crystallographica. Section D
    • PMID: 20124692
    • Kabsch W. 2010. XDS. Acta Crystallographica. Section D, Biological Crystallography 66:125-132. doi: 10.1107/S0907444909047337, PMID: 20124692
    • (2010) Biological Crystallography , vol.66 , pp. 125-132
    • Kabsch, W.1
  • 44
    • 36949080621 scopus 로고
    • The species specificity of myoglobin
    • PMID: 13214049
    • Kendrew JC, Parrish RG, Marrack JR, Orlans ES. 1954. The species specificity of myoglobin. Nature 174:946-949. doi: 10.1038/174946a0, PMID: 13214049
    • (1954) Nature , vol.174 , pp. 946-949
    • Kendrew, J.C.1    Parrish, R.G.2    Marrack, J.R.3    Orlans, E.S.4
  • 46
    • 0035871686 scopus 로고    scopus 로고
    • A fast SHAKE algorithm to solve distance constraint equations for small molecules in molecular dynamics simulations
    • Kräutler V, van Gunsteren WF, Hünenberger PH. 2001. A fast SHAKE algorithm to solve distance constraint equations for small molecules in molecular dynamics simulations. Journal of Computational Chemistry 22:501-508. doi: 10.1002/1096-987X(20010415)22:5<501::AID-JCC1021>3.0.CO;2-V
    • (2001) Journal of Computational Chemistry , vol.22 , pp. 501-508
    • Kräutler, V.1    van Gunsteren, W.F.2    Hünenberger, P.H.3
  • 47
    • 45849154166 scopus 로고    scopus 로고
    • An improved general amino acid replacement matrix
    • PMID: 18367465
    • Le SQ, Gascuel O. 2008. An improved general amino acid replacement matrix. Molecular Biology and Evolution 25:1307–1320. doi: 10.1093/molbev/msn067, PMID: 18367465
    • (2008) Molecular Biology and Evolution , vol.25 , pp. 1307-1320
    • Le, S.Q.1    Gascuel, O.2
  • 48
    • 84907010596 scopus 로고    scopus 로고
    • Space-group and origin ambiguity in macromolecular structures with pseudo- symmetry and its treatment with the program Zanuda
    • PMID: 25195756
    • Lebedev AA, Isupov MN. 2014. Space-group and origin ambiguity in macromolecular structures with pseudo- symmetry and its treatment with the program Zanuda. Acta Crystallographica Section D Biological Crystallography 70:2430-2443. doi: 10.1107/S1399004714014795, PMID: 25195756
    • (2014) Acta Crystallographica Section D Biological Crystallography , vol.70 , pp. 2430-2443
    • Lebedev, A.A.1    Isupov, M.N.2
  • 49
    • 0019332167 scopus 로고
    • How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
    • PMID: 7373651
    • Lesk AM, Chothia C. 1980. How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins. Journal of Molecular Biology 136:225-270. doi: 10.1016/0022-2836(80)90373-3, PMID: 7373651
    • (1980) Journal of Molecular Biology , vol.136 , pp. 225-270
    • Lesk, A.M.1    Chothia, C.2
  • 50
    • 0024507791 scopus 로고
    • Alternative packing arrangements in the hydrophobic core of lambda repressor
    • PMID: 2524006
    • Lim WA, Sauer RT. 1989. Alternative packing arrangements in the hydrophobic core of lambda repressor. Nature 339:31-36. doi: 10.1038/339031a0, PMID: 2524006
    • (1989) Nature , vol.339 , pp. 31-36
    • Lim, W.A.1    Sauer, R.T.2
  • 52
    • 84959076040 scopus 로고    scopus 로고
    • The structural basis of oncogenic mutations G12, G13 and Q61 in small GTPase K-Ras4B
    • PMID: 26902995
    • Lu S, Jang H, Nussinov R, Zhang J. 2016. The structural basis of oncogenic mutations G12, G13 and Q61 in small GTPase K-Ras4B. Scientific Reports 6:21949. doi: 10.1038/srep21949, PMID: 26902995
    • (2016) Scientific Reports , vol.6 , pp. 21949
    • Lu, S.1    Jang, H.2    Nussinov, R.3    Zhang, J.4
  • 53
    • 0000020246 scopus 로고    scopus 로고
    • A five-site model for liquid water and the reproduction of the density anomaly by rigid, nonpolarizable potential functions
    • Mahoney MW, Jorgensen WL. 2000. A five-site model for liquid water and the reproduction of the density anomaly by rigid, nonpolarizable potential functions. The Journal of Chemical Physics 112:8910-8922. doi: 10.1063/1.481505
    • (2000) The Journal of Chemical Physics , vol.112 , pp. 8910-8922
    • Mahoney, M.W.1    Jorgensen, W.L.2
  • 54
    • 0344885558 scopus 로고    scopus 로고
    • Structural evidence for feedback activation by ras.Gtp of the Ras-specific nucleotide exchange factor SOS
    • PMID: 12628188
    • Margarit SM, Sondermann H, Hall BE, Nagar B, Hoelz A, Pirruccello M, Bar-Sagi D, Kuriyan J. 2003. Structural evidence for feedback activation by ras.gtp of the Ras-specific nucleotide exchange factor SOS. Cell 112:685–695. doi: 10.1016/S0092-8674(03)00149-1, PMID: 12628188
    • (2003) Cell , vol.112 , pp. 685-695
    • Margarit, S.M.1    Sondermann, H.2    Hall, B.E.3    Nagar, B.4    Hoelz, A.5    Pirruccello, M.6    Bar-Sagi, D.7    Kuriyan, J.8
  • 56
    • 84960104882 scopus 로고    scopus 로고
    • K-Ras protein as a drug target
    • PMID: 26960760
    • McCormick F. 2016. K-Ras protein as a drug target. Journal of Molecular Medicine 94:253-258. doi: 10.1007/s00109-016-1382-7, PMID: 26960760
    • (2016) Journal of Molecular Medicine , vol.94 , pp. 253-258
    • McCormick, F.1
  • 57
    • 33846426122 scopus 로고    scopus 로고
    • Solving structures of protein complexes by molecular replacement with Phaser
    • PMID: 17164524
    • McCoy AJ. 2007. Solving structures of protein complexes by molecular replacement with Phaser. Acta Crystallographica Section D Biological Crystallography 63:32-41. doi: 10.1107/S0907444906045975, PMID: 17164524
    • (2007) Acta Crystallographica Section D Biological Crystallography , vol.63 , pp. 32-41
    • McCoy, A.J.1
  • 58
    • 84868365613 scopus 로고    scopus 로고
    • The spatial architecture of protein function and adaptation
    • PMID: 23041932
    • McLaughlin RN, Poelwijk FJ, Raman A, Gosal WS, Ranganathan R. 2012. The spatial architecture of protein function and adaptation. Nature 491:138-142. doi: 10.1038/nature11500, PMID: 23041932
    • (2012) Nature , vol.491 , pp. 138-142
    • McLaughlin, R.N.1    Poelwijk, F.J.2    Raman, A.3    Gosal, W.S.4    Ranganathan, R.5
  • 59
    • 0025117674 scopus 로고
    • Molecular switch for signal transduction: Structural differences between active and inactive forms of protooncogenic ras proteins
    • PMID: 2406906
    • Milburn MV, Tong L, deVos AM, Brü nger A, Yamaizumi Z, Nishimura S, Kim SH. 1990. Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic ras proteins. Science 247:939-945. doi: 10.1126/science.2406906, PMID: 2406906
    • (1990) Science , vol.247 , pp. 939-945
    • Milburn, M.V.1    Tong, L.2    Devos, A.M.3    Brü Nger, A.4    Yamaizumi, Z.5    Nishimura, S.6    Kim, S.H.7
  • 60
    • 84926338043 scopus 로고    scopus 로고
    • PASTA: Ultra-large multiple sequence alignment for nucleotide and Amino-Acid sequences
    • PMID: 25549288
    • Mirarab S, Nguyen N, Guo S, Wang LS, Kim J, Warnow T. 2015. PASTA: ultra-large multiple sequence alignment for nucleotide and Amino-Acid sequences. Journal of Computational Biology 22:377-386. doi: 10.1089/cmb.2014.0156, PMID: 25549288
    • (2015) Journal of Computational Biology , vol.22 , pp. 377-386
    • Mirarab, S.1    Nguyen, N.2    Guo, S.3    Wang, L.S.4    Kim, J.5    Warnow, T.6
  • 64
    • 84922683604 scopus 로고    scopus 로고
    • ’Latent drivers’ expand the cancer mutational landscape
    • PMID: 25661093
    • Nussinov R, Tsai CJ. 2015. ’Latent drivers’ expand the cancer mutational landscape. Current Opinion in Structural Biology 32:25-32. doi: 10.1016/j.sbi.2015.01.004, PMID: 25661093
    • (2015) Current Opinion in Structural Biology , vol.32 , pp. 25-32
    • Nussinov, R.1    Tsai, C.J.2
  • 65
    • 84870557342 scopus 로고    scopus 로고
    • Characterization of the second ion-binding site in the G domain of H-Ras
    • PMID: 23148511
    • O’Connor C, Kovrigin EL. 2012. Characterization of the second ion-binding site in the G domain of H-Ras. Biochemistry 51:9638-9646. doi: 10.1021/bi301304g, PMID: 23148511
    • (2012) Biochemistry , vol.51 , pp. 9638-9646
    • O’Connor, C.1    Kovrigin, E.L.2
  • 66
    • 0025310575 scopus 로고
    • Refined crystal structure of the triphosphate conformation of H-ras p21 at 1.35 A resolution: Implications for the mechanism of GTP hydrolysis. The EMBO
    • PMID: 2196171
    • Pai EF, Krengel U, Petsko GA, Goody RS, Kabsch W, Wittinghofer A. 1990. Refined crystal structure of the triphosphate conformation of H-ras p21 at 1.35 A resolution: implications for the mechanism of GTP hydrolysis. The EMBO Journal 9:2351-2359. PMID: 2196171
    • (1990) Journal , vol.9 , pp. 2351-2359
    • Pai, E.F.1    Krengel, U.2    Petsko, G.A.3    Goody, R.S.4    Kabsch, W.5    Wittinghofer, A.6
  • 67
    • 36949066642 scopus 로고
    • Structure of haemoglobin: A three- dimensional fourier synthesis at 5.5-A. resolution, obtained by X-ray analysis
    • PMID: 18990801
    • Perutz MF, Rossmann MG, Cullis AF, Muirhead H, Will G, North AC. 1960. Structure of haemoglobin: a three- dimensional fourier synthesis at 5.5-A. resolution, obtained by X-ray analysis. Nature 185:416-422. doi: 10.1038/185416a0, PMID: 18990801
    • (1960) Nature , vol.185 , pp. 416-422
    • Perutz, M.F.1    Rossmann, M.G.2    Cullis, A.F.3    Muirhead, H.4    Will, G.5    North, A.C.6
  • 68
    • 84922439802 scopus 로고    scopus 로고
    • Protein evolution. Pervasive degeneracy and epistasis in a protein-protein interface
    • PMID: 25657251
    • Podgornaia AI, Laub MT. 2015. Protein evolution. pervasive degeneracy and epistasis in a protein-protein interface. Science 347:673-677. doi: 10.1126/science.1257360, PMID: 25657251
    • (2015) Science , vol.347 , pp. 673-677
    • Podgornaia, A.I.1    Laub, M.T.2
  • 69
    • 84861147473 scopus 로고    scopus 로고
    • A comprehensive survey of ras mutations in Cancer
    • PMID: 22589270
    • Prior IA, Lewis PD, Mattos C. 2012. A comprehensive survey of ras mutations in Cancer. Cancer Research 72: 2457-2467. doi: 10.1158/0008-5472.CAN-11-2612, PMID: 22589270
    • (2012) Cancer Research , vol.72 , pp. 2457-2467
    • Prior, I.A.1    Lewis, P.D.2    Mattos, C.3
  • 70
    • 84978287481 scopus 로고    scopus 로고
    • Origins of Allostery and Evolvability in Proteins: A case study
    • PMID: 27321669
    • Raman AS, White KI, Ranganathan R. 2016. Origins of Allostery and Evolvability in Proteins: a case study. Cell 166:468-480. doi: 10.1016/j.cell.2016.05.047, PMID: 27321669
    • (2016) Cell , vol.166 , pp. 468-480
    • Raman, A.S.1    White, K.I.2    Ranganathan, R.3
  • 71
    • 84888594977 scopus 로고    scopus 로고
    • The genomic and cellular foundations of animal origins
    • PMID: 24050174
    • Richter DJ, King N. 2013. The genomic and cellular foundations of animal origins. Annual Review of Genetics 47: 509-537. doi: 10.1146/annurev-genet-111212-133456, PMID: 24050174
    • (2013) Annual Review of Genetics , vol.47 , pp. 509-537
    • Richter, D.J.1    King, N.2
  • 72
    • 84859967413 scopus 로고    scopus 로고
    • The ras protein superfamily: Evolutionary tree and role of conserved amino acids
    • PMID: 22270915
    • Rojas AM, Fuentes G, Rausell A, Valencia A. 2012. The ras protein superfamily: evolutionary tree and role of conserved amino acids. The Journal of Cell Biology 196:189-201. doi: 10.1083/jcb.201103008, PMID: 22270915
    • (2012) The Journal of Cell Biology , vol.196 , pp. 189-201
    • Rojas, A.M.1    Fuentes, G.2    Rausell, A.3    Valencia, A.4
  • 73
    • 84875703570 scopus 로고    scopus 로고
    • Analyses of the effects of all ubiquitin point mutants on yeast growth rate
    • PMID: 23376099
    • Roscoe BP, Thayer KM, Zeldovich KB, Fushman D, Bolon DN. 2013. Analyses of the effects of all ubiquitin point mutants on yeast growth rate. Journal of Molecular Biology 425:1363-1377. doi: 10.1016/j.jmb.2013.01.032, PMID: 23376099
    • (2013) Journal of Molecular Biology , vol.425 , pp. 1363-1377
    • Roscoe, B.P.1    Thayer, K.M.2    Zeldovich, K.B.3    Fushman, D.4    Bolon, D.N.5
  • 74
    • 0035968219 scopus 로고    scopus 로고
    • Thermodynamics of ras/effector and Cdc42/effector interactions probed by isothermal titration calorimetry
    • PMID: 11292826
    • Rudolph MG, Linnemann T, Grunewald P, Wittinghofer A, Vetter IR, Herrmann C. 2001. Thermodynamics of ras/effector and Cdc42/effector interactions probed by isothermal titration calorimetry. Journal of Biological Chemistry 276:23914-23921. doi: 10.1074/jbc.M011600200, PMID: 11292826
    • (2001) Journal of Biological Chemistry , vol.276 , pp. 23914-23921
    • Rudolph, M.G.1    Linnemann, T.2    Grunewald, P.3    Wittinghofer, A.4    Vetter, I.R.5    Herrmann, C.6
  • 75
    • 0022859343 scopus 로고
    • Cloning and characterization of the high-affinity cAMP phosphodiesterase of Saccharomyces cerevisiae
    • PMID: 3025832
    • Sass P, Field J, Nikawa J, Toda T, Wigler M. 1986. Cloning and characterization of the high-affinity cAMP phosphodiesterase of Saccharomyces cerevisiae. PNAS 83:9303-9307. doi: 10.1073/pnas.83.24.9303, PMID: 3025832
    • (1986) PNAS , vol.83 , pp. 9303-9307
    • Sass, P.1    Field, J.2    Nikawa, J.3    Toda, T.4    Wigler, M.5
  • 76
    • 0030772378 scopus 로고    scopus 로고
    • The Ras-RasGAP complex: Structural basis for GTPase activation and its loss in oncogenic ras mutants
    • PMID: 9219684
    • Scheffzek K, Ahmadian MR, Kabsch W, Wiesmüller L, Lautwein A, Schmitz F, Wittinghofer A. 1997. The Ras-RasGAP complex: structural basis for GTPase activation and its loss in oncogenic ras mutants. Science 277:333-338. doi: 10.1126/science.277.5324.333, PMID: 9219684
    • (1997) Science , vol.277 , pp. 333-338
    • Scheffzek, K.1    Ahmadian, M.R.2    Kabsch, W.3    Wiesmüller, L.4    Lautwein, A.5    Schmitz, F.6    Wittinghofer, A.7
  • 77
    • 0001686739 scopus 로고    scopus 로고
    • Multiple BCR-ABL kinase domain mutations confer polyclonal resistance to the tyrosine kinase inhibitor imatinib (STI571) in chronic phase and blast crisis chronic myeloid leukemia
    • PMID: 12204532
    • Shah NP, Nicoll JM, Nagar B, Gorre ME, Paquette RL, Kuriyan J, Sawyers CL. 2002. Multiple BCR-ABL kinase domain mutations confer polyclonal resistance to the tyrosine kinase inhibitor imatinib (STI571) in chronic phase and blast crisis chronic myeloid leukemia. Cancer Cell 2:117-125. doi: 10.1016/S1535-6108(02)00096-X, PMID: 12204532
    • (2002) Cancer Cell , vol.2 , pp. 117-125
    • Shah, N.P.1    Nicoll, J.M.2    Nagar, B.3    Gorre, M.E.4    Paquette, R.L.5    Kuriyan, J.6    Sawyers, C.L.7
  • 78
    • 84894039820 scopus 로고    scopus 로고
    • Integrated RAS signaling defined by parallel NMR detection of effectors and regulators
    • PMID: 24441586
    • Smith MJ, Ikura M. 2014. Integrated RAS signaling defined by parallel NMR detection of effectors and regulators. Nature Chemical Biology 10:223-230. doi: 10.1038/nchembio.1435, PMID: 24441586
    • (2014) Nature Chemical Biology , vol.10 , pp. 223-230
    • Smith, M.J.1    Ikura, M.2
  • 79
    • 7044226349 scopus 로고    scopus 로고
    • Structural analysis of autoinhibition in the ras activator Son of sevenless
    • PMID: 15507210
    • Sondermann H, Soisson SM, Boykevisch S, Yang SS, Bar-Sagi D, Kuriyan J. 2004. Structural analysis of autoinhibition in the ras activator Son of sevenless. Cell 119:393-405. doi: 10.1016/j.cell.2004.10.005, PMID: 15507210
    • (2004) Cell , vol.119 , pp. 393-405
    • Sondermann, H.1    Soisson, S.M.2    Boykevisch, S.3    Yang, S.S.4    Bar-Sagi, D.5    Kuriyan, J.6
  • 80
    • 77954743785 scopus 로고    scopus 로고
    • Mutational effects and the evolution of new protein functions
    • PMID: 20634811
    • Soskine M, Tawfik DS. 2010. Mutational effects and the evolution of new protein functions. Nature Reviews Genetics 11:572-582. doi: 10.1038/nrg2808, PMID: 20634811
    • (2010) Nature Reviews Genetics , vol.11 , pp. 572-582
    • Soskine, M.1    Tawfik, D.S.2
  • 81
    • 0035942247 scopus 로고    scopus 로고
    • Dynamic properties of the ras switch I region and its importance for binding to effectors
    • PMID: 11320243
    • Spoerner M, Herrmann C, Vetter IR, Kalbitzer HR, Wittinghofer A. 2001. Dynamic properties of the ras switch I region and its importance for binding to effectors. PNAS 98:4944-4949. doi: 10.1073/pnas.081441398, PMID: 11320243
    • (2001) PNAS , vol.98 , pp. 4944-4949
    • Spoerner, M.1    Herrmann, C.2    Vetter, I.R.3    Kalbitzer, H.R.4    Wittinghofer, A.5
  • 82
    • 84899553363 scopus 로고    scopus 로고
    • RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
    • PMID: 24451623
    • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312-1313. doi: 10.1093/bioinformatics/btu033, PMID: 24451623
    • (2014) Bioinformatics , vol.30 , pp. 1312-1313
    • Stamatakis, A.1
  • 83
    • 84923321398 scopus 로고    scopus 로고
    • Evolvability as a function of purifying selection in TEM-1 b- lactamase
    • PMID: 25723163
    • Stiffler MA, Hekstra DR, Ranganathan R. 2015. Evolvability as a function of purifying selection in TEM-1 b- lactamase. Cell 160:882-892. doi: 10.1016/j.cell.2015.01.035, PMID: 25723163
    • (2015) Cell , vol.160 , pp. 882-892
    • Stiffler, M.A.1    Hekstra, D.R.2    Ranganathan, R.3
  • 84
    • 84942895072 scopus 로고    scopus 로고
    • Tyrosine phosphorylation of RAS by ABL allosterically enhances effector binding
    • PMID: 25999467
    • Ting PY, Johnson CW, Fang C, Cao X, Graeber TG, Mattos C, Colicelli J. 2015. Tyrosine phosphorylation of RAS by ABL allosterically enhances effector binding. The FASEB Journal 29:3750-3761. doi: 10.1096/fj.15-271510, PMID: 25999467
    • (2015) The FASEB Journal , vol.29 , pp. 3750-3761
    • Ting, P.Y.1    Johnson, C.W.2    Fang, C.3    Cao, X.4    Graeber, T.G.5    Mattos, C.6    Colicelli, J.7
  • 85
    • 84891899052 scopus 로고    scopus 로고
    • Residue specific contributions to stability and activity inferred from saturation mutagenesis and deep sequencing
    • PMID: 24721454
    • Tripathi A, Varadarajan R. 2014. Residue specific contributions to stability and activity inferred from saturation mutagenesis and deep sequencing. Current Opinion in Structural Biology 24:63-71. doi: 10.1016/j.sbi.2013.12.001, PMID: 24721454
    • (2014) Current Opinion in Structural Biology , vol.24 , pp. 63-71
    • Tripathi, A.1    Varadarajan, R.2
  • 86
    • 0035834388 scopus 로고    scopus 로고
    • The guanine nucleotide-binding switch in three dimensions
    • PMID: 11701921
    • Vetter IR, Wittinghofer A. 2001. The guanine nucleotide-binding switch in three dimensions. Science 294:1299-1304. doi: 10.1126/science.1062023, PMID: 11701921
    • (2001) Science , vol.294 , pp. 1299-1304
    • Vetter, I.R.1    Wittinghofer, A.2
  • 89
    • 0030464444 scopus 로고    scopus 로고
    • How Ras-related proteins talk to their effectors
    • PMID: 9009833
    • Wittinghofer A, Nassar N. 1996. How Ras-related proteins talk to their effectors. Trends in Biochemical Sciences 21:488-491. doi: 10.1016/S0968-0004(96)10064-5, PMID: 9009833
    • (1996) Trends in Biochemical Sciences , vol.21 , pp. 488-491
    • Wittinghofer, A.1    Nassar, N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.