-
1
-
-
84255195028
-
Regulating the regulator: Post-translational modification of RAS
-
Ahearn IM, Haigis K, Bar-Sagi D, Philips MR (2012) Regulating the regulator: Post-translational modification of RAS. Nat Rev Mol Cell Biol 13(1):39-51.
-
(2012)
Nat Rev Mol Cell Biol
, vol.13
, Issue.1
, pp. 39-51
-
-
Ahearn, I.M.1
Haigis, K.2
Bar-Sagi, D.3
Philips, M.R.4
-
2
-
-
34547561587
-
Plasma membrane nanoswitches generate high-fidelity Ras signal transduction
-
Tian T, et al. (2007) Plasma membrane nanoswitches generate high-fidelity Ras signal transduction. Nat Cell Biol 9(8):905-914.
-
(2007)
Nat Cell Biol
, vol.9
, Issue.8
, pp. 905-914
-
-
Tian, T.1
-
3
-
-
75749150934
-
Ras membrane orientation and nanodomain localization generate isoform diversity
-
Abankwa D, Gorfe AA, Inder K, Hancock JF (2010) Ras membrane orientation and nanodomain localization generate isoform diversity. Proc Natl Acad Sci USA 107(3):1130-1135.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.3
, pp. 1130-1135
-
-
Abankwa, D.1
Gorfe, A.A.2
Inder, K.3
Hancock, J.F.4
-
4
-
-
84867572593
-
The role of G-domain orientation and nucleotide state on the Ras isoform-specific membrane interaction
-
Kapoor S, et al. (2012) The role of G-domain orientation and nucleotide state on the Ras isoform-specific membrane interaction. Eur Biophys J 41(10):801-813.
-
(2012)
Eur Biophys J
, vol.41
, Issue.10
, pp. 801-813
-
-
Kapoor, S.1
-
5
-
-
79851483766
-
Membrane-mediated induction and sorting of K-Ras micro-domain signaling platforms
-
Weise K, et al. (2011) Membrane-mediated induction and sorting of K-Ras micro-domain signaling platforms. J Am Chem Soc 133(4):880-887.
-
(2011)
J Am Chem Soc
, vol.133
, Issue.4
, pp. 880-887
-
-
Weise, K.1
-
6
-
-
84887022689
-
Rotational and translational dynamics of ras proteins upon binding to model membrane systems
-
Werkmuller A, Triola G, Waldmann H, Winter R (2013) Rotational and translational dynamics of ras proteins upon binding to model membrane systems. Chemphyschem 14(16):3698-3705.
-
(2013)
Chemphyschem
, vol.14
, Issue.16
, pp. 3698-3705
-
-
Werkmuller, A.1
Triola, G.2
Waldmann, H.3
Winter, R.4
-
7
-
-
84881100549
-
Advances in NMR structures of integral membrane proteins
-
Maslennikov I, Choe S (2013) Advances in NMR structures of integral membrane proteins. Curr Opin Struct Biol 23(4):555-562.
-
(2013)
Curr Opin Struct Biol
, vol.23
, Issue.4
, pp. 555-562
-
-
Maslennikov, I.1
Choe, S.2
-
8
-
-
34547687784
-
Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy
-
Tugarinov V, Kanelis V, Kay LE (2006) Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy. Nat Protoc 1(2):749-754.
-
(2006)
Nat Protoc
, vol.1
, Issue.2
, pp. 749-754
-
-
Tugarinov, V.1
Kanelis, V.2
Kay, L.E.3
-
9
-
-
74049122402
-
Lipid-regulated sterol transfer between closely apposed membranes by oxysterol-binding protein homologues
-
Schulz TA, et al. (2009) Lipid-regulated sterol transfer between closely apposed membranes by oxysterol-binding protein homologues. J Cell Biol 187(6):889-903.
-
(2009)
J Cell Biol
, vol.187
, Issue.6
, pp. 889-903
-
-
Schulz, T.A.1
-
10
-
-
84874849890
-
Membrane-dependent modulation of the mTOR activator Rheb: NMR observations of a GTPase tethered to a lipid-bilayer nanodisc
-
Mazhab-Jafari MT, et al. (2013) Membrane-dependent modulation of the mTOR activator Rheb: NMR observations of a GTPase tethered to a lipid-bilayer nanodisc. JAm Chem Soc 135(9):3367-3370.
-
(2013)
JAm Chem Soc
, vol.135
, Issue.9
, pp. 3367-3370
-
-
Mazhab-Jafari, M.T.1
-
11
-
-
0037442962
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
-
Dominguez C, Boelens R, Bonvin AM (2003) HADDOCK: A protein-protein docking approach based on biochemical or biophysical information. J Am Chem Soc 125(7):1731-1737.
-
(2003)
J Am Chem Soc
, vol.125
, Issue.7
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.3
-
12
-
-
33847413103
-
Structure and dynamics of the full-length lipid-modified H-Ras protein in a 1,2-dimyristoylglycero-3- phosphocholine bilayer
-
Gorfe AA, Hanzal-Bayer M, Abankwa D, Hancock JF, McCammon JA (2007) Structure and dynamics of the full-length lipid-modified H-Ras protein in a 1,2-dimyristoylglycero-3- phosphocholine bilayer. J Med Chem 50(4):674-684.
-
(2007)
J Med Chem
, vol.50
, Issue.4
, pp. 674-684
-
-
Gorfe, A.A.1
Hanzal-Bayer, M.2
Abankwa, D.3
Hancock, J.F.4
McCammon, J.A.5
-
13
-
-
40949130399
-
A novel switch region regulates H-ras membrane orientation and signal output
-
Abankwa D, et al. (2008) A novel switch region regulates H-ras membrane orientation and signal output. EMBO J 27(5):727-735.
-
(2008)
EMBO J
, vol.27
, Issue.5
, pp. 727-735
-
-
Abankwa, D.1
-
14
-
-
84927615339
-
The Ras-membrane interface: Isoform-specific differences in the catalytic domain
-
Parker JA, Mattos C (2015) The Ras-membrane interface: Isoform-specific differences in the catalytic domain. Molec Cancer Res 13(4):595-603.
-
(2015)
Molec Cancer Res
, vol.13
, Issue.4
, pp. 595-603
-
-
Parker, J.A.1
Mattos, C.2
-
15
-
-
46149107301
-
Electrostatic interactions positively regulate K-Ras nanocluster formation and function
-
Plowman SJ, Ariotti N, Goodall A, Parton RG, Hancock JF (2008) Electrostatic interactions positively regulate K-Ras nanocluster formation and function. Mol Cell Biol 28(13):4377-4385.
-
(2008)
Mol Cell Biol
, vol.28
, Issue.13
, pp. 4377-4385
-
-
Plowman, S.J.1
Ariotti, N.2
Goodall, A.3
Parton, R.G.4
Hancock, J.F.5
-
17
-
-
80655149448
-
Solution structure of the state 1 conformer of GTP-bound H-Ras protein and distinct dynamic properties between the state 1 and state 2 conformers
-
Araki M, et al. (2011) Solution structure of the state 1 conformer of GTP-bound H-Ras protein and distinct dynamic properties between the state 1 and state 2 conformers. J Biol Chem 286(45):39644-39653.
-
(2011)
J Biol Chem
, vol.286
, Issue.45
, pp. 39644-39653
-
-
Araki, M.1
-
18
-
-
0029665424
-
Conformational transitions in p21ras and in its complexes with the effector protein Raf-RBD and the GTPase activating protein GAP
-
Geyer M, et al. (1996) Conformational transitions in p21ras and in its complexes with the effector protein Raf-RBD and the GTPase activating protein GAP. Biochemistry 35(32):10308-10320.
-
(1996)
Biochemistry
, vol.35
, Issue.32
, pp. 10308-10320
-
-
Geyer, M.1
-
19
-
-
63549096871
-
Ras conformational switching: Simulating nucleotide-dependent conformational transitions with accelerated molecular dynamics
-
Grant BJ, Gorfe AA, McCammon JA (2009) Ras conformational switching: Simulating nucleotide-dependent conformational transitions with accelerated molecular dynamics. PLOS Comput Biol 5(3):e1000325.
-
(2009)
PLOS Comput Biol
, vol.5
, Issue.3
, pp. e1000325
-
-
Grant, B.J.1
Gorfe, A.A.2
McCammon, J.A.3
-
20
-
-
10044259744
-
Perturbation of the conformational equilibria in Ras by selective mutations as studied by 31P NMR spectroscopy
-
Spoerner M, Wittinghofer A, Kalbitzer HR (2004) Perturbation of the conformational equilibria in Ras by selective mutations as studied by 31P NMR spectroscopy. FEBS Lett 578(3):305-310.
-
(2004)
FEBS Lett
, vol.578
, Issue.3
, pp. 305-310
-
-
Spoerner, M.1
Wittinghofer, A.2
Kalbitzer, H.R.3
-
21
-
-
33847248863
-
Expansion of the genotypic and phenotypic spectrum in patients with KRAS germline mutations
-
Zenker M, et al. (2007) Expansion of the genotypic and phenotypic spectrum in patients with KRAS germline mutations. J Med Genet 44(2):131-135.
-
(2007)
J Med Genet
, vol.44
, Issue.2
, pp. 131-135
-
-
Zenker, M.1
-
22
-
-
33644622238
-
Germline KRAS mutations cause Noonan syndrome
-
Schubbert S, et al. (2006) Germline KRAS mutations cause Noonan syndrome. Nat Genet 38(3):331-336.
-
(2006)
Nat Genet
, vol.38
, Issue.3
, pp. 331-336
-
-
Schubbert, S.1
-
23
-
-
33644629727
-
Germline KRAS and BRAF mutations in cardio-facio-cutaneous syndrome
-
Niihori T, et al. (2006) Germline KRAS and BRAF mutations in cardio-facio-cutaneous syndrome. Nat Genet 38(3):294-296.
-
(2006)
Nat Genet
, vol.38
, Issue.3
, pp. 294-296
-
-
Niihori, T.1
-
24
-
-
33745265268
-
Germline missense mutations affecting KRAS Isoform B are associated with a severe Noonan syndrome phenotype
-
Carta C, et al. (2006) Germline missense mutations affecting KRAS Isoform B are associated with a severe Noonan syndrome phenotype. Am J Hum Genet 79(1):129-135.
-
(2006)
Am J Hum Genet
, vol.79
, Issue.1
, pp. 129-135
-
-
Carta, C.1
-
25
-
-
78650472338
-
Germline KRAS mutations cause aberrant biochemical and physical properties leading to developmental disorders
-
Gremer L, et al. (2011) Germline KRAS mutations cause aberrant biochemical and physical properties leading to developmental disorders. Hum Mutat 32(1):33-43.
-
(2011)
Hum Mutat
, vol.32
, Issue.1
, pp. 33-43
-
-
Gremer, L.1
-
26
-
-
36049048292
-
Biochemical and functional characterization of germ line KRAS mutations
-
Schubbert S, et al. (2007) Biochemical and functional characterization of germ line KRAS mutations. Mol Cell Biol 27(22):7765-7770.
-
(2007)
Mol Cell Biol
, vol.27
, Issue.22
, pp. 7765-7770
-
-
Schubbert, S.1
-
27
-
-
84880861468
-
The exomes of the NCI-60 panel: A genomic resource for cancer biology and systems pharmacology
-
Abaan OD, et al. (2013) The exomes of the NCI-60 panel: A genomic resource for cancer biology and systems pharmacology. Cancer Res 73(14):4372-4382.
-
(2013)
Cancer Res
, vol.73
, Issue.14
, pp. 4372-4382
-
-
Abaan, O.D.1
-
28
-
-
0242574321
-
BRAF and KRAS mutations in stomach cancer
-
Lee SH, et al. (2003) BRAF and KRAS mutations in stomach cancer. Oncogene 22(44):6942-6945.
-
(2003)
Oncogene
, vol.22
, Issue.44
, pp. 6942-6945
-
-
Lee, S.H.1
-
29
-
-
37249013316
-
Cardio-facio-cutaneous and Noonan syndromes due to mutations in the RAS/MAPK signalling pathway: Genotype-phenotype relationships and overlap with Costello syndrome
-
Nava C, et al. (2007) Cardio-facio-cutaneous and Noonan syndromes due to mutations in the RAS/MAPK signalling pathway: Genotype-phenotype relationships and overlap with Costello syndrome. J Med Genet 44(12):763-771.
-
(2007)
J Med Genet
, vol.44
, Issue.12
, pp. 763-771
-
-
Nava, C.1
-
30
-
-
80053900941
-
Frequent pathway mutations of splicing machinery in myelodysplasia
-
Yoshida K, et al. (2011) Frequent pathway mutations of splicing machinery in myelodysplasia. Nature 478(7367):64-69.
-
(2011)
Nature
, vol.478
, Issue.7367
, pp. 64-69
-
-
Yoshida, K.1
-
31
-
-
84896090174
-
Dragging ras back in the ring
-
Stephen AG, Esposito D, Bagni RK, McCormick F (2014) Dragging ras back in the ring. Cancer Cell 25(3):272-281.
-
(2014)
Cancer Cell
, vol.25
, Issue.3
, pp. 272-281
-
-
Stephen, A.G.1
Esposito, D.2
Bagni, R.K.3
McCormick, F.4
-
32
-
-
36748998784
-
HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets
-
de Vries SJ, et al. (2007) HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets. Proteins 69(4):726-733.
-
(2007)
Proteins
, vol.69
, Issue.4
, pp. 726-733
-
-
De Vries, S.J.1
-
33
-
-
0041569752
-
Influence of cholesterol and water content on phospholipid lateral diffusion in bilayers
-
Filippov A, Orädd G, Lindblom G (2003) Influence of cholesterol and water content on phospholipid lateral diffusion in bilayers. Langmuir 19(16):6397-6400.
-
(2003)
Langmuir
, vol.19
, Issue.16
, pp. 6397-6400
-
-
Filippov, A.1
Orädd, G.2
Lindblom, G.3
-
34
-
-
48449099381
-
PBEQ-Solver for online visualization of electrostatic potential of biomolecules
-
Jo S, Vargyas M, Vasko-Szedlar J, Roux B, Im W (2008) PBEQ-Solver for online visualization of electrostatic potential of biomolecules. Nucleic Acids Res 36(web server issue):W270-W275.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.WEB SERVER ISSUE
, pp. W270-W275
-
-
Jo, S.1
Vargyas, M.2
Vasko-Szedlar, J.3
Roux, B.4
Im, W.5
-
35
-
-
47149096704
-
CHARMM-GUI: A web-based graphical user interface for CHARMM
-
Jo S, Kim T, Iyer VG, Im W (2008) CHARMM-GUI: A web-based graphical user interface for CHARMM. J Comput Chem 29(11):1859-1865.
-
(2008)
J Comput Chem
, vol.29
, Issue.11
, pp. 1859-1865
-
-
Jo, S.1
Kim, T.2
Iyer, V.G.3
Im, W.4
-
36
-
-
0032096837
-
Continuum solvation model: Computation of electrostatic forces from numerical solutions to the Poisson-Boltzmann equation
-
Im W, Beglov D, Roux B (1998) Continuum solvation model: Computation of electrostatic forces from numerical solutions to the Poisson-Boltzmann equation. Comput Phys Commun 111(1-3):59-75.
-
(1998)
Comput Phys Commun
, vol.111
, Issue.1-3
, pp. 59-75
-
-
Im, W.1
Beglov, D.2
Roux, B.3
-
37
-
-
84923853645
-
Allosteric effects of the oncogenic RasQ61L mutant on Raf-RBD
-
Fetics SK, et al. (2015) Allosteric effects of the oncogenic RasQ61L mutant on Raf-RBD. Structure 23(3):505-516.
-
(2015)
Structure
, vol.23
, Issue.3
, pp. 505-516
-
-
Fetics, S.K.1
-
38
-
-
77952915958
-
Protein NMR using paramagnetic ions
-
Otting G (2010) Protein NMR using paramagnetic ions. Annu Rev Biophys 39:387-405.
-
(2010)
Annu Rev Biophys
, vol.39
, pp. 387-405
-
-
Otting, G.1
-
39
-
-
0041333142
-
Pound-wise but pennyfoolish: How well do micromolecules fare in macromolecular refinement?
-
Kleywegt GJ, Henrick K, Dodson EJ, van Aalten DM (2003) Pound-wise but pennyfoolish: How well do micromolecules fare in macromolecular refinement? Structure 11(9):1051-1059.
-
(2003)
Structure
, vol.11
, Issue.9
, pp. 1051-1059
-
-
Kleywegt, G.J.1
Henrick, K.2
Dodson, E.J.3
Van Aalten, D.M.4
-
40
-
-
84961981789
-
An automated force field topology builder (ATB) and repository: Version 1.0
-
Malde AK, et al. (2011) An automated force field topology builder (ATB) and repository: Version 1.0. J Chem Theory Comput 7(12):4026-4037.
-
(2011)
J Chem Theory Comput
, vol.7
, Issue.12
, pp. 4026-4037
-
-
Malde, A.K.1
-
41
-
-
0033556236
-
Peptide folding: When simulation meets experiment
-
Daura X, et al. (1999) Peptide folding: When simulation meets experiment. Angew Chem Int Ed 38(1-2):236-240.
-
(1999)
Angew Chem Int Ed
, vol.38
, Issue.1-2
, pp. 236-240
-
-
Daura, X.1
-
42
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger AT, et al. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr 54(Pt 5):905-921.
-
(1998)
Acta Crystallogr D Biol Crystallogr
, vol.54
, Issue.5
, pp. 905-921
-
-
Brünger, A.T.1
|