메뉴 건너뛰기




Volumn 4, Issue 1, 2016, Pages 58-67

Integrative clustering methods of multi-omics data for molecule-based cancer classifications

Author keywords

cancer classification; clustering; integrative analysis; omics

Indexed keywords


EID: 85020398444     PISSN: 20954689     EISSN: 20954697     Source Type: Journal    
DOI: 10.1007/s40484-016-0063-4     Document Type: Review
Times cited : (50)

References (81)
  • 1
  • 2
    • 84895900452 scopus 로고    scopus 로고
    • Rapid learning for precision oncology
    • PID: 24445514
    • Shrager, J. and Tenenbaum, J. M. (2014) Rapid learning for precision oncology. Nat. Rev. Clin. Oncol., 11, 109–118
    • (2014) Nat. Rev. Clin. Oncol. , vol.11 , pp. 109-118
    • Shrager, J.1    Tenenbaum, J.M.2
  • 3
    • 84908460595 scopus 로고    scopus 로고
    • Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin
    • COI: 1:CAS:528:DC%2BC2cXhtleisrjJ, PID: 25109877
    • Hoadley, K. A., Yau, C.,Wolf, D. M., Cherniack, A. D., Tamborero, D., Ng, S., Leiserson, M. D., Niu, B., McLellan, M. D., Uzunangelov, V., et al. (2014) Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin. Cell, 158, 929–944
    • (2014) Cell , vol.158 , pp. 929-944
    • Hoadley, K.A.Y.1    Wolf, D.M.2    Cherniack, A.D.3    Tamborero, D.4    Ng, S.5    Leiserson, M.D.6    Niu, B.7    McLellan, M.D.8    Uzunangelov, V.9
  • 4
    • 84925031191 scopus 로고    scopus 로고
    • Methods of integrating data to uncover genotype-phenotype interactions
    • COI: 1:CAS:528:DC%2BC2MXmslKrsA%3D%3D, PID: 25582081
    • Ritchie, M. D., Holzinger, E. R., Li, R., Pendergrass, S. A. and Kim, D. (2015) Methods of integrating data to uncover genotype-phenotype interactions. Nat. Rev. Genet., 16, 85–97
    • (2015) Nat. Rev. Genet. , vol.16 , pp. 85-97
    • Ritchie, M.D.1    Holzinger, E.R.2    Li, R.3    Pendergrass, S.A.4    Kim, D.5
  • 5
    • 84923369732 scopus 로고    scopus 로고
    • Breast tumor subgroups reveal diverse clinical prognostic power
    • PID: 24499868
    • Liu, Z., Zhang, X. S. and Zhang, S. (2014) Breast tumor subgroups reveal diverse clinical prognostic power. Sci. Rep., 4, 4002
    • (2014) Sci. Rep. , vol.4 , pp. 4002
    • Liu, Z.1    Zhang, X.S.2    Zhang, S.3
  • 6
    • 84903987099 scopus 로고    scopus 로고
    • The Pan-Cancer analysis of pseudogene expression reveals biologically and clinically relevant tumour subtypes
    • COI: 1:CAS:528:DC%2BC2cXhvF2mu7zP, PID: 24999802
    • Han, L., Yuan, Y., Zheng, S., Yang, Y., Li, J., Edgerton, M. E., Diao, L., Xu, Y., Verhaak, R. G. and Liang, H. (2014) The Pan-Cancer analysis of pseudogene expression reveals biologically and clinically relevant tumour subtypes. Nat. Commun., 5, 3963
    • (2014) Nat. Commun. , vol.5 , pp. 3963
    • Han, L.1    Yuan, Y.2    Zheng, S.3    Yang, Y.4    Li, J.5    Edgerton, M.E.6    Diao, L.7    Xu, Y.8    Verhaak, R.G.9    Liang, H.10
  • 8
    • 84877028141 scopus 로고    scopus 로고
    • Comprehensive molecular portraits of human breast tumours
    • Cancer Genome Atlas, N. (2012) Comprehensive molecular portraits of human breast tumours. Nature, 490, 61–70
    • (2012) Nature , vol.490 , pp. 61-70
  • 9
    • 14544300998 scopus 로고    scopus 로고
    • Systematic review of microsatellite instability and colorectal cancer prognosis
    • COI: 1:CAS:528:DC%2BD2MXitVartLY%3D, PID: 15659508
    • Popat, S., Hubner, R. and Houlston, R. S. (2005) Systematic review of microsatellite instability and colorectal cancer prognosis. J. Clin. Oncol., 23, 609–618
    • (2005) J. Clin. Oncol. , vol.23 , pp. 609-618
    • Popat, S.1    Hubner, R.2    Houlston, R.S.3
  • 10
    • 10344260184 scopus 로고    scopus 로고
    • CpG island methylator phenotype in cancer
    • COI: 1:CAS:528:DC%2BD2cXhtVarsLjK, PID: 15573120
    • Issa, J. P. (2004) CpG island methylator phenotype in cancer. Nat. Rev. Cancer, 4, 988–993
    • (2004) Nat. Rev. Cancer , vol.4 , pp. 988-993
    • Issa, J.P.1
  • 12
    • 84881613268 scopus 로고    scopus 로고
    • Integrating genomic, epigenomic, and transcriptomic features reveals modular signatures underlying poor prognosis in ovarian cancer
    • COI: 1:CAS:528:DC%2BC3sXht1GmurfL, PID: 23933257
    • Zhang, W., Liu, Y., Sun, N., Wang, D., Boyd-Kirkup, J., Dou, X. and Han, J. D. (2013) Integrating genomic, epigenomic, and transcriptomic features reveals modular signatures underlying poor prognosis in ovarian cancer. Cell Reports, 4, 542–553
    • (2013) Cell Reports , vol.4 , pp. 542-553
    • Zhang, W.1    Liu, Y.2    Sun, N.3    Wang, D.4    Boyd-Kirkup, J.5    Dou, X.6    Han, J.D.7
  • 14
    • 84876058478 scopus 로고    scopus 로고
    • Joint and Individual Variation Explained (Jive) for integrated analysis of multiple data types
    • PID: 23745156
    • Lock, E. F., Hoadley, K. A., Marron, J. S. and Nobel, A. B. (2013) Joint and Individual Variation Explained (Jive) for integrated analysis of multiple data types. Ann. Appl. Stat., 7, 523–542
    • (2013) Ann. Appl. Stat. , vol.7 , pp. 523-542
    • Lock, E.F.1    Hoadley, K.A.2    Marron, J.S.3    Nobel, A.B.4
  • 15
    • 84949254714 scopus 로고    scopus 로고
    • Fast dimension reduction and integrative clustering of multi-omics data using low-rank approximation: application to cancer molecular classification
    • PID: 26626453
    • Wu, D., Wang, D., Gu, J. and Zhang, M. Q. (2015) Fast dimension reduction and integrative clustering of multi-omics data using low-rank approximation: application to cancer molecular classification. BMC Genomics, 16, 1022.
    • (2015) BMC Genomics , vol.16 , pp. 1022
    • Wu, D.1    Wang, D.2    Gu, J.3    Zhang, M.Q.4
  • 16
    • 84868152524 scopus 로고    scopus 로고
    • Discovery of multi-dimensional modules by integrative analysis of cancer genomic data
    • COI: 1:CAS:528:DC%2BC38XhsFygurbN, PID: 22879375
    • Zhang, S., Liu, C. C., Li, W., Shen, H., Laird, P. W. and Zhou, X. J. (2012) Discovery of multi-dimensional modules by integrative analysis of cancer genomic data. Nucleic Acids Res., 40, 9379–9391
    • (2012) Nucleic Acids Res. , vol.40 , pp. 9379-9391
    • Zhang, S.1    Liu, C.C.2    Li, W.3    Shen, H.4    Laird, P.W.5    Zhou, X.J.6
  • 17
    • 84876261160 scopus 로고    scopus 로고
    • Pathway-based personalized analysis of cancer
    • COI: 1:CAS:528:DC%2BC3sXnvVels7w%3D, PID: 23547110
    • Drier, Y., Sheffer, M. and Domany, E. (2013) Pathway-based personalized analysis of cancer. Proc. Natl. Acad. Sci. USA, 110, 6388–6393
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 6388-6393
    • Drier, Y.1    Sheffer, M.2    Domany, E.3
  • 18
    • 84870796415 scopus 로고    scopus 로고
    • Bayesian correlated clustering to integrate multiple datasets
    • COI: 1:CAS:528:DC%2BC38XhvVSmsrvF, PID: 23047558
    • Kirk, P., Griffin, J. E., Savage, R. S., Ghahramani, Z. and Wild, D. L. (2012) Bayesian correlated clustering to integrate multiple datasets. Bioinformatics, 28, 3290–3297
    • (2012) Bioinformatics , vol.28 , pp. 3290-3297
    • Kirk, P.1    Griffin, J.E.2    Savage, R.S.3    Ghahramani, Z.4    Wild, D.L.5
  • 19
    • 84885617335 scopus 로고    scopus 로고
    • Bayesian consensus clustering
    • COI: 1:CAS:528:DC%2BC3sXhsFOmsbbN, PID: 23990412
    • Lock, E. F. and Dunson, D. B. (2013) Bayesian consensus clustering. Bioinformatics, 29, 2610–2616
    • (2013) Bioinformatics , vol.29 , pp. 2610-2616
    • Lock, E.F.1    Dunson, D.B.2
  • 20
    • 84895516704 scopus 로고    scopus 로고
    • Similarity network fusion for aggregating data types on a genomic scale
    • COI: 1:CAS:528:DC%2BC2cXhs1SlsbY%3D, PID: 24464287
    • Wang, B., Mezlini, A. M., Demir, F., Fiume, M., Tu, Z., Brudno, M., Haibe-Kains, B. and Goldenberg, A. (2014) Similarity network fusion for aggregating data types on a genomic scale. Nat. Methods, 11, 333–337
    • (2014) Nat. Methods , vol.11 , pp. 333-337
    • Wang, B.1    Mezlini, A.M.2    Demir, F.3    Fiume, M.4    Tu, Z.5    Brudno, M.6    Haibe-Kains, B.7    Goldenberg, A.8
  • 21
    • 77954195272 scopus 로고    scopus 로고
    • Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM
    • COI: 1:CAS:528:DC%2BC3cXnsVOltbk%3D, PID: 20529912
    • Vaske, C. J., Benz, S. C., Sanborn, J. Z., Earl, D., Szeto, C., Zhu, J., Haussler, D. and Stuart, J. M. (2010) Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM. Bioinformatics, 26, i237–i245
    • (2010) Bioinformatics , vol.26 , pp. i237
    • Vaske, C.J.1    Benz, S.C.2    Sanborn, J.Z.3    Earl, D.4    Szeto, C.5    Zhu, J.6    Haussler, D.7    Stuart, J.M.8
  • 22
    • 70449331456 scopus 로고    scopus 로고
    • Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis
    • COI: 1:CAS:528:DC%2BD1MXhtl2jt73P, PID: 19759197
    • Shen, R., Olshen, A. B. and Ladanyi, M. (2009) Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis. Bioinformatics, 25, 2906–2912
    • (2009) Bioinformatics , vol.25 , pp. 2906-2912
    • Shen, R.1    Olshen, A.B.2    Ladanyi, M.3
  • 23
    • 79959448071 scopus 로고    scopus 로고
    • A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules
    • COI: 1:CAS:528:DC%2BC3MXnvVKgurg%3D, PID: 21685098
    • Zhang, S., Li, Q., Liu, J. and Zhou, X. J. (2011) A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules. Bioinformatics, 27, i401–i409
    • (2011) Bioinformatics , vol.27 , pp. i401
    • Zhang, S.1    Li, Q.2    Liu, J.3    Zhou, X.J.4
  • 24
    • 79960675858 scopus 로고    scopus 로고
    • Robust principal component analysis?
    • Candes, E. J., Li, X. D., Ma, Y. and Wright, J. (2011) Robust principal component analysis? J. ACM, 58
    • (2011) J. ACM , vol.58
    • Candes, E.J.1    Li, X.D.2    Ma, Y.3    Wright, J.4
  • 25
    • 80051762104 scopus 로고    scopus 로고
    • Distributed optimization and statistical learning via the alternating direction method of multipliers
    • Boyd, S. Parikh, N. Chu, E. Peleato, A B. Eckstein (2011) Distributed optimization and statistical learning via the alternating direction method of multipliers. Foundations and Trends in Machine Learning, 3, 1–122
    • (2011) Foundations and Trends in Machine Learning , vol.3 , pp. 1-122
    • Boyd, S.1    Parikh, N.2    Chu, E.3    Peleato, A.4
  • 26
    • 71049116435 scopus 로고    scopus 로고
    • Exact matrix completion via convex optimization
    • Candès, E. J. and Recht, B. (2009) Exact matrix completion via convex optimization. Found. Comput. Math., 9, 717–772
    • (2009) Found. Comput. Math. , vol.9 , pp. 717-772
    • Candès, E.J.1    Recht, B.2
  • 27
    • 77951291046 scopus 로고    scopus 로고
    • A singular value thresholding algorithm for matrix completion
    • Cai, J. F., Candes, E. J. and Shen, Z. W. (2010) A singular value thresholding algorithm for matrix completion. SIAM J. Optim., 20, 1956–1982.
    • (2010) SIAM J. Optim. , vol.20 , pp. 1956-1982
    • Cai, J.F.1    Candes, E.J.2    Shen, Z.W.3
  • 28
    • 84903977589 scopus 로고    scopus 로고
    • Piecewise-constant and low-rank approximation for identification of recurrent copy number variations
    • COI: 1:CAS:528:DC%2BC2cXhtFCrtLjP, PID: 24642062
    • Zhou, X., Liu, J., Wan, X. and Yu, W. (2014) Piecewise-constant and low-rank approximation for identification of recurrent copy number variations. Bioinformatics, 30, 1943–1949
    • (2014) Bioinformatics , vol.30 , pp. 1943-1949
    • Zhou, X.1    Liu, J.2    Wan, X.3    Yu, W.4
  • 29
    • 84928983540 scopus 로고    scopus 로고
    • Statistical significance of variables driving systematic variation in high-dimensional data
    • PID: 25336500
    • Chung, N. C. and Storey, J. D. (2015) Statistical significance of variables driving systematic variation in high-dimensional data. Bioinformatics, 31, 545–554
    • (2015) Bioinformatics , vol.31 , pp. 545-554
    • Chung, N.C.1    Storey, J.D.2
  • 30
    • 79959375596 scopus 로고    scopus 로고
    • Statistical significance of the contribution of variables to the PCA solution: an alternative permutation strategy
    • Linting, M., van Os, B. J. and Meulman, J. J. (2011) Statistical significance of the contribution of variables to the PCA solution: an alternative permutation strategy. Psychometrika, 76, 440–460.
    • (2011) Psychometrika , vol.76 , pp. 440-460
    • Linting, M.1    van Os, B.J.2    Meulman, J.J.3
  • 34
    • 84903289127 scopus 로고    scopus 로고
    • Clustering by fast search and find of density peaks
    • COI: 1:CAS:528:DC%2BC2cXhtVaks7%2FL, PID: 24970081
    • Rodriguez, A. and Laio, A. (2014) Clustering by fast search and find of density peaks. Science, 344, 1492–1496
    • (2014) Science , vol.344 , pp. 1492-1496
    • Rodriguez, A.1    Laio, A.2
  • 36
    • 79958266660 scopus 로고    scopus 로고
    • The Dirichlet labeling process for clustering functional data
    • Nguyen, X. and Gelfand, A. E. (2011) The Dirichlet labeling process for clustering functional data. Stat. Sin., 21, 1249–1289.
    • (2011) Stat. Sin. , vol.21 , pp. 1249-1289
    • Nguyen, X.1    Gelfand, A.E.2
  • 37
    • 33845756481 scopus 로고    scopus 로고
    • Model-based clustering for expression data via a Dirichlet process mixture model
    • Cambridge University Press, Cambridge
    • Dahl, D. B. (2006) Model-based clustering for expression data via a Dirichlet process mixture model. In Bayesian inference for gene expression and proteomics, 201–218, Cambridge: Cambridge University Press
    • (2006) In Bayesian inference for gene expression and proteomics , pp. 201-218
    • Dahl, D.B.1
  • 41
    • 0037062448 scopus 로고    scopus 로고
    • Community structure in social and biological networks
    • COI: 1:CAS:528:DC%2BD38XkvVGjsL4%3D, PID: 12060727
    • Girvan, M. and Newman, M. E. (2002) Community structure in social and biological networks. Proc. Natl. Acad. Sci. USA, 99, 7821–7826
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 7821-7826
    • Girvan, M.1    Newman, M.E.2
  • 42
    • 33745012299 scopus 로고    scopus 로고
    • Modularity and community structure in networks
    • COI: 1:CAS:528:DC%2BD28XlvVCitLw%3D, PID: 16723398
    • Newman, M. E. (2006) Modularity and community structure in networks. Proc. Natl. Acad. Sci. USA, 103, 8577–8582
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 8577-8582
    • Newman, M.E.1
  • 44
    • 34548583274 scopus 로고    scopus 로고
    • A tutorial on spectral clustering
    • von Luxburg, U. (2007) A tutorial on spectral clustering. Stat. Comput., 17, 395–416.
    • (2007) Stat. Comput. , vol.17 , pp. 395-416
    • von Luxburg, U.1
  • 45
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • COI: 1:CAS:528:DC%2BD38Xltlajsrk%3D, PID: 11917018
    • Enright, A. J., van Dongen, S. and Ouzounis, C. A. (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res., 30, 1575–1584
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1575-1584
    • Enright, A.J.1    van Dongen, S.2    Ouzounis, C.A.3
  • 46
    • 0002727513 scopus 로고
    • Distance between sets
    • Levandowsky, M. and Winter, D. (1971) Distance between sets. Nature, 234, 34–35.
    • (1971) Nature , vol.234 , pp. 34-35
    • Levandowsky, M.1    Winter, D.2
  • 47
    • 0000008146 scopus 로고
    • Comparing partitions
    • Hubert, L. and Arabie, P. (1985) Comparing partitions. J. Classif., 2, 193–218.
    • (1985) J. Classif. , vol.2 , pp. 193-218
    • Hubert, L.1    Arabie, P.2
  • 53
    • 84864326095 scopus 로고    scopus 로고
    • From cancer genomes to oncogenic drivers, tumour dependencies and therapeutic targets
    • COI: 1:CAS:528:DC%2BC38XpsVWitLg%3D, PID: 22739505
    • Eifert, C. and Powers, R. S. (2012) From cancer genomes to oncogenic drivers, tumour dependencies and therapeutic targets. Nat. Rev. Cancer, 12, 572–578
    • (2012) Nat. Rev. Cancer , vol.12 , pp. 572-578
    • Eifert, C.1    Powers, R.S.2
  • 57
    • 84915815121 scopus 로고    scopus 로고
    • Identification of causal genetic drivers of human disease through systems-level analysis of regulatory networks
    • COI: 1:CAS:528:DC%2BC2cXhslGjsbnK, PID: 25303533
    • Chen, J. C., Alvarez, M. J., Talos, F., Dhruv, H., Rieckhof, G. E., Iyer, A., Diefes, K. L., Aldape, K., Berens, M., Shen, M. M., et al. (2014) Identification of causal genetic drivers of human disease through systems-level analysis of regulatory networks. Cell, 159, 402–414
    • (2014) Cell , vol.159 , pp. 402-414
    • Chen, J.C.1    Alvarez, M.J.2    Talos, F.3    Dhruv, H.4    Rieckhof, G.E.5    Iyer, A.6    Diefes, K.L.7    Aldape, K.8    Berens, M.9    Shen, M.M.10
  • 59
    • 33750204290 scopus 로고    scopus 로고
    • Genetics of global gene expression
    • COI: 1:CAS:528:DC%2BD28XhtVyktLnP, PID: 17047685
    • Rockman, M. V. and Kruglyak, L. (2006) Genetics of global gene expression. Nat. Rev. Genet., 7, 862–872
    • (2006) Nat. Rev. Genet. , vol.7 , pp. 862-872
    • Rockman, M.V.1    Kruglyak, L.2
  • 62
    • 84908335908 scopus 로고    scopus 로고
    • Integrated genomic characterization of papillary thyroid carcinoma
    • Cancer Genome Atlas Research Network. (2014) Integrated genomic characterization of papillary thyroid carcinoma. Cell, 159, 676–690
    • (2014) Cell , vol.159 , pp. 676-690
  • 64
    • 0038692119 scopus 로고    scopus 로고
    • Human housekeeping genes are compact
    • COI: 1:CAS:528:DC%2BD3sXlt1eitLc%3D, PID: 12850439
    • Eisenberg, E. and Levanon, E. Y. (2003) Human housekeeping genes are compact. Trends Genet., 19, 362–365
    • (2003) Trends Genet. , vol.19 , pp. 362-365
    • Eisenberg, E.1    Levanon, E.Y.2
  • 66
    • 84900510076 scopus 로고    scopus 로고
    • Non-negative matrix factorization with sparseness constraints
    • Hoyer, P. O. (2004) Non-negative matrix factorization with sparseness constraints. J. Mach. Learn. Res., 5, 1457–1469.
    • (2004) J. Mach. Learn. Res. , vol.5 , pp. 1457-1469
    • Hoyer, P.O.1
  • 67
    • 0033592606 scopus 로고    scopus 로고
    • Learning the parts of objects by non-negative matrix factorization
    • COI: 1:CAS:528:DyaK1MXntFartrg%3D, PID: 10548103
    • Lee, D. D. and Seung, H. S. (1999) Learning the parts of objects by non-negative matrix factorization. Nature, 401, 788–791
    • (1999) Nature , vol.401 , pp. 788-791
    • Lee, D.D.1    Seung, H.S.2
  • 68
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • COI: 1:CAS:528:DC%2BC3MXhs12htbrO, PID: 22080510
    • Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. and Tanabe, M. (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res., 40, D109–D114
    • (2012) Nucleic Acids Res. , vol.40 , pp. D109
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tanabe, M.5
  • 71
    • 84938201089 scopus 로고    scopus 로고
    • Pathway-based personalized analysis of breast cancer expression data
    • COI: 1:CAS:528:DC%2BC2MXnslOgtbg%3D, PID: 25963740
    • Livshits, A., Git, A., Fuks, G., Caldas, C. and Domany, E. (2015) Pathway-based personalized analysis of breast cancer expression data. Mol. Oncol., 9, 1471–1483
    • (2015) Mol. Oncol. , vol.9 , pp. 1471-1483
    • Livshits, A.1    Git, A.2    Fuks, G.3    Caldas, C.4    Domany, E.5
  • 73
    • 84884403849 scopus 로고    scopus 로고
    • Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE)
    • COI: 1:CAS:528:DC%2BC3sXhs1Cis77F, PID: 23986566
    • Paull, E. O., Carlin, D. E., Niepel, M., Sorger, P. K., Haussler, D. and Stuart, J. M. (2013) Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE). Bioinformatics, 29, 2757–2764
    • (2013) Bioinformatics , vol.29 , pp. 2757-2764
    • Paull, E.O.1    Carlin, D.E.2    Niepel, M.3    Sorger, P.K.4    Haussler, D.5    Stuart, J.M.6
  • 74
    • 84887084951 scopus 로고    scopus 로고
    • Network-based stratification of tumor mutations
    • COI: 1:CAS:528:DC%2BC3sXhsVeqsrvM, PID: 24037242
    • Hofree, M., Shen, J. P., Carter, H., Gross, A. and Ideker, T. (2013) Network-based stratification of tumor mutations. Nat. Methods, 10, 1108–1115
    • (2013) Nat. Methods , vol.10 , pp. 1108-1115
    • Hofree, M.1    Shen, J.P.2    Carter, H.3    Gross, A.4    Ideker, T.5
  • 75
    • 84934753411 scopus 로고    scopus 로고
    • Tumor characterization and stratification by integrated molecular profiles reveals essential pan-cancer features
    • PID: 26148869
    • Liu, Z. and Zhang, S. (2015) Tumor characterization and stratification by integrated molecular profiles reveals essential pan-cancer features. BMC Genomics, 16, 503
    • (2015) BMC Genomics , vol.16 , pp. 503
    • Liu, Z.1    Zhang, S.2
  • 77
    • 84907270779 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of gastric adenocarcinoma
    • Cancer Genome Atlas Research Network. (2014) Comprehensive molecular characterization of gastric adenocarcinoma. Nature, 513, 202–209
    • (2014) Nature , vol.513 , pp. 202-209
  • 79
    • 0002555784 scopus 로고
    • The multivariate calibrationproblem in chemistry solved by the Pls Method
    • Wold, S., Martens, H. and Wold, H. (1983) The multivariate calibrationproblem in chemistry solved by the Pls Method. Lect. Notes Math., 973, 286–293.
    • (1983) Lect. Notes Math. , vol.973 , pp. 286-293
    • Wold, S.1    Martens, H.2    Wold, H.3
  • 80
    • 84929142356 scopus 로고    scopus 로고
    • Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data
    • PID: 25286920
    • Bastien, P., Bertrand, F., Meyer, N. and Maumy-Bertrand, M. (2015) Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data. Bioinformatics, 31, 397–404
    • (2015) Bioinformatics , vol.31 , pp. 397-404
    • Bastien, P.1    Bertrand, F.2    Meyer, N.3    Maumy-Bertrand, M.4
  • 81
    • 84944345463 scopus 로고    scopus 로고
    • Building the foundation for genomics in precision medicine
    • COI: 1:CAS:528:DC%2BC2MXhs1KqtLzM, PID: 26469044
    • Aronson, S. J. and Rehm, H. L. (2015) Building the foundation for genomics in precision medicine. Nature, 526, 336–342
    • (2015) Nature , vol.526 , pp. 336-342
    • Aronson, S.J.1    Rehm, H.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.