-
1
-
-
79951784545
-
High-resolution comparative genomic hybridization of inflammatory breast cancer and identification of candidate genes
-
Bekhouche, I. et al. (2011) High-resolution comparative genomic hybridization of inflammatory breast cancer and identification of candidate genes. PLoS One, 6, e16950.
-
(2011)
PLoS One
, vol.6
-
-
Bekhouche, I.1
-
2
-
-
49549085311
-
A fast and flexible method for the segmentation of aCGH data
-
Ben-Yaacov, E. and Eldar, Y. (2008) A fast and flexible method for the segmentation of aCGH data. Bioinformatics, 24, i139-i145.
-
(2008)
Bioinformatics
, vol.24
-
-
Ben-Yaacov, E.1
Eldar, Y.2
-
3
-
-
38049100456
-
Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma
-
Beroukhim, R. et al. (2007) Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma. Proc. Natl Acad. Sci. USA, 104, 20007-20012.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 20007-20012
-
-
Beroukhim, R.1
-
4
-
-
80051762104
-
Distributed optimization and statistical learning via the alternating direction method of multipliers
-
Boyd, S. (2010) Distributed optimization and statistical learning via the alternating direction method of multipliers. Found. Trends. Mach. Learn., 3, 1-122.
-
(2010)
Found. Trends. Mach. Learn.
, vol.3
, pp. 1-122
-
-
Boyd, S.1
-
5
-
-
77951291046
-
A singular value thresholding algorithm for matrix completion
-
Cai, J. et al. (2010) A singular value thresholding algorithm for matrix completion. SIAM J. Optim., 20, 1956-1982.
-
(2010)
SIAM J. Optim.
, vol.20
, pp. 1956-1982
-
-
Cai, J.1
-
6
-
-
79960675858
-
Robust principal component analysis?
-
Candè s, E. et al. (2011) Robust principal component analysis? J. ACM, 58, 11.
-
(2011)
J. ACM
, vol.58
, pp. 11
-
-
Candè, S.E.1
-
7
-
-
33748276243
-
Stac: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments
-
Diskin, S. et al. (2006) Stac: a method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments. Genome Res., 16, 1149-1158.
-
(2006)
Genome Res.
, vol.16
, pp. 1149-1158
-
-
Diskin, S.1
-
8
-
-
0000802374
-
The approximation of one matrix by another of lower rank
-
Eckart, C. and Young, G. (1936) The approximation of one matrix by another of lower rank. Psychometrika, 1, 211-218.
-
(1936)
Psychometrika
, vol.1
, pp. 211-218
-
-
Eckart, C.1
Young, G.2
-
9
-
-
33845229882
-
C35 (c17orf37) is a novel tumor biomarker abundantly expressed in breast cancer
-
Evans, E.E. et al. (2006) C35 (c17orf37) is a novel tumor biomarker abundantly expressed in breast cancer. Mol. Cancer Ther., 5, 2919-2930.
-
(2006)
Mol. Cancer Ther.
, vol.5
, pp. 2919-2930
-
-
Evans, E.E.1
-
11
-
-
20044377204
-
The influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility
-
Gonzalez, E. et al. (2005) The influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility. Science, 307, 1434-1440.
-
(2005)
Science
, vol.307
, pp. 1434-1440
-
-
Gonzalez, E.1
-
13
-
-
34548452229
-
Assessing the significance of conserved genomic aberrations using high resolution genomic microarrays
-
Guttman, M. et al. (2007) Assessing the significance of conserved genomic aberrations using high resolution genomic microarrays. PLoS Genet., 3, e143.
-
(2007)
PLoS Genet.
, vol.3
-
-
Guttman, M.1
-
14
-
-
67651098662
-
Mechanisms of change in gene copy number
-
Hastings, P. et al. (2009) Mechanisms of change in gene copy number. Nat. Rev. Genet., 10, 551-564.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 551-564
-
-
Hastings, P.1
-
15
-
-
12344259648
-
Analysis of array cgh data: From signal ratio to gain and loss of DNA regions
-
Hupé, P. et al. (2004) Analysis of array cgh data: from signal ratio to gain and loss of DNA regions. Bioinformatics, 20, 3413-3422.
-
(2004)
Bioinformatics
, vol.20
, pp. 3413-3422
-
-
Hupé, P.1
-
16
-
-
27544483495
-
Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
-
Lai, W. et al. (2005) Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data. Bioinformatics, 21, 3763-3770.
-
(2005)
Bioinformatics
, vol.21
, pp. 3763-3770
-
-
Lai, W.1
-
17
-
-
33749043929
-
Genomic rearrangements and gene copy-number alterations as a cause of nervous system disorders
-
Lee, J.A. and Lupski, J.R. (2006) Genomic rearrangements and gene copy-number alterations as a cause of nervous system disorders. Neuron, 52, 103-121.
-
(2006)
Neuron
, vol.52
, pp. 103-121
-
-
Lee, J.A.1
Lupski, J.R.2
-
18
-
-
34347361618
-
Copy number variations and clinical cytogenetic diagnosis of constitutional disorders
-
Lee, C. et al. (2007) Copy number variations and clinical cytogenetic diagnosis of constitutional disorders. Nat. Genet., 39, S48-S54.
-
(2007)
Nat. Genet.
, vol.39
-
-
Lee, C.1
-
20
-
-
34347349069
-
Genomic rearrangements and sporadic disease
-
Lupski, J.R. (2007) Genomic rearrangements and sporadic disease. Nat. Genet., 39, S43-S47.
-
(2007)
Nat. Genet.
, vol.39
-
-
Lupski, J.R.1
-
21
-
-
33646163019
-
Biohmm: A heterogeneous hidden Markov model for segmenting array CGH data
-
Marioni, J. et al. (2006) Biohmm: a heterogeneous hidden Markov model for segmenting array CGH data. Bioinformatics, 22, 1144-1146.
-
(2006)
Bioinformatics
, vol.22
, pp. 1144-1146
-
-
Marioni, J.1
-
22
-
-
0026135419
-
Robust regression methods for computer vision: A review
-
Meer, P. et al. (1991) Robust regression methods for computer vision: a review. Int. J. Comp. Vision, 6, 59-70.
-
(1991)
Int. J. Comp. Vision
, vol.6
, pp. 59-70
-
-
Meer, P.1
-
23
-
-
80052701674
-
A fused lasso latent feature model for analyzing multisample aCGH data
-
Nowak, G. et al. (2011) A fused lasso latent feature model for analyzing multisample aCGH data. Biostatistics, 12, 776-791.
-
(2011)
Biostatistics
, vol.12
, pp. 776-791
-
-
Nowak, G.1
-
24
-
-
3543105225
-
Circular binary segmentation for the analysis of array-based DNA copy number data
-
Olshen, A. et al. (2004) Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics, 5, 557-572.
-
(2004)
Biostatistics
, vol.5
, pp. 557-572
-
-
Olshen, A.1
-
25
-
-
25444531432
-
A statistical approach for array CGH data analysis
-
Picard, F. et al. (2005) A statistical approach for array CGH data analysis. BMC Bioinformatics, 6, 27.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 27
-
-
Picard, F.1
-
26
-
-
79959397907
-
Joint segmentation, calling, and normalization of multiple CGH profiles
-
Picard, F. et al. (2011) Joint segmentation, calling, and normalization of multiple CGH profiles. Biostatistics, 12, 413-428.
-
(2011)
Biostatistics
, vol.12
, pp. 413-428
-
-
Picard, F.1
-
27
-
-
20044375763
-
Array comparative genomic hybridization and its applications in cancer
-
Pinkel, D. and Albertson, D. (2005) Array comparative genomic hybridization and its applications in cancer. Nat. Genetics, 37, S11-S17.
-
(2005)
Nat. Genetics
, vol.37
-
-
Pinkel, D.1
Albertson, D.2
-
28
-
-
13844250828
-
Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
-
Pollack, J.R. et al. (2002) Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proc. Natl Acad. Sci. USA, 99, 12963-12968.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 12963-12968
-
-
Pollack, J.R.1
-
29
-
-
65449186172
-
Bayesian DNA copy number analysis
-
Rancoita, P. et al. (2009) Bayesian DNA copy number analysis. BMC Bioinformatics, 10, 10.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 10
-
-
Rancoita, P.1
-
30
-
-
77950171445
-
Finding recurrent copy number alteration regions: A review of methods
-
Rueda, O. and Diaz-Uriarte, R. (2010) Finding recurrent copy number alteration regions: a review of methods. Curr. Bioinform., 5, 1-17.
-
(2010)
Curr. Bioinform.
, vol.5
, pp. 1-17
-
-
Rueda, O.1
Diaz-Uriarte, R.2
-
31
-
-
34547844126
-
Modeling recurrent DNA copy number alterations in array cgh data
-
Shah, S.P. et al. (2007) Modeling recurrent DNA copy number alterations in array cgh data. Bioinformatics, 23, i450-i458.
-
(2007)
Bioinformatics
, vol.23
-
-
Shah, S.P.1
-
32
-
-
34249681894
-
Continuous-index hidden Markov modelling of array CGH copy number data
-
Stjernqvist, S. et al. (2007) Continuous-index hidden Markov modelling of array CGH copy number data. Bioinformatics, 23, 1006-1014.
-
(2007)
Bioinformatics
, vol.23
, pp. 1006-1014
-
-
Stjernqvist, S.1
-
33
-
-
37249032736
-
Spatial smoothing and hot spot detection for CGH data using the fused lasso
-
Tibshirani, R. and Wang, P. (2008) Spatial smoothing and hot spot detection for CGH data using the fused lasso. Biostatistics, 9, 18-29.
-
(2008)
Biostatistics
, vol.9
, pp. 18-29
-
-
Tibshirani, R.1
Wang, P.2
-
34
-
-
33645712308
-
Just relax: Convex programming methods for identifying sparse signals in noise
-
Tropp, J.A. (2006) Just relax: convex programming methods for identifying sparse signals in noise. IEEE Trans. Inf. Theory, 52, 1030-1051.
-
(2006)
IEEE Trans. Inf. Theory
, vol.52
, pp. 1030-1051
-
-
Tropp, J.A.1
-
35
-
-
27944455289
-
A comparison study: Applying segmentation to array cgh data for downstream analyses
-
Willenbrock, H. and Fridlyand, J. (2005) A comparison study: applying segmentation to array cgh data for downstream analyses. Bioinformatics, 21, 4084-4091.
-
(2005)
Bioinformatics
, vol.21
, pp. 4084-4091
-
-
Willenbrock, H.1
Fridlyand, J.2
-
36
-
-
77955883799
-
Detecting simultaneous changepoints in multiple sequences
-
Zhang, N. et al. (2010a) Detecting simultaneous changepoints in multiple sequences. Biometrika, 97, 631-645.
-
(2010)
Biometrika
, vol.97
, pp. 631-645
-
-
Zhang, N.1
-
37
-
-
77949501694
-
CMDS: A population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data
-
Zhang, Q. et al. (2010b) CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data. Bioinformatics, 26, 464-469.
-
(2010)
Bioinformatics
, vol.26
, pp. 464-469
-
-
Zhang, Q.1
-
39
-
-
84878315271
-
Multisample aCGH data analysis via total variation and spectral regularization
-
Zhou, X. et al. (2013) Multisample aCGH data analysis via total variation and spectral regularization. IEEE/ACM Trans. Comput. Biol. Bioinform., 10, 230-235.
-
(2013)
IEEE/ACM Trans. Comput. Biol. Bioinform.
, vol.10
, pp. 230-235
-
-
Zhou, X.1
|