Genetic diversity of Lactobacillus plantarum strains from some indigenous fermented foods in Nigeria

LWT

Volumn 82, Issue , 2017, Pages 199-206

  Adesulu Dahunsi, A T ^a,b   Sanni, A I ^a   Jeyaram, K ^b   Banwo, K ^a  

^a UNIVERSITY OF IBADAN   (Nigeria)

^b INSTITUTE OF BIORESOURCES AND SUSTAINABLE DEVELOPMENT   (India)

Author keywords

16S 23 rDNA; Indigenous; Intraspecies; Lactobacillus plantarum; PFGE

Indexed keywords

BIODIVERSITY; CHEMICAL PLANTS; ELECTROPHORESIS; FERMENTATION; POLYMERASE CHAIN REACTION;

16S-23 RDNA; INDIGENOUS; INTRASPECIES; LACTOBACILLUS PLANTARUM; PFGE;

BACILLI;

EID: 85018491082     PISSN: 00236438     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.lwt.2017.04.055     Document Type: Article

References (44)

1. Adesulu-Dahunsi, A.T., Sanni, A.I., Jeyaram, K., Rapid differentiation among Lactobacillus, Pediococcus and Weissella species from some Nigerian indigenous fermented foods. LWT- Food Science and Technology 77 (2017), 39–44.
2. Anna, V., Giovanmi, G., Giuseppe, S., Thomas, P., Beresford, P., Fox, F., et al. Genotypic characterization of lactic acid bacteria isolated from traditional pecorino siciliano cheese uses genetic typing of isolates. Dairy of Science and Technology 88 (2008), 619–629.
3. Banwo, K., Sanni, A., Tan, H., Tian, Y., Phenotypic and genotypic characterization of Lactic acid bacteria isolated from some Nigerian traditional fermented foods. Food Biotechnology 26 (2012), 124–142.
4. Blandino, A., Al-seeri, M.E., Pandiella, S.S., Canteroa, D., Webb, C., Cereal-based fermented foods and beverages. Food Research International 36 (2003), 527–543.
5. Bouton, Y., Guyot, P., Beuvier, E., Taillez, P., Grappin, R., Use of PCR-based methods and PFGE for typing and monitoring homo-fermentative lactobacilli during Comte cheese ripening. International Journal of Food Microbiology 76 (2002), 27–38.
6. Bringel, F., Curk, M.C., Hubert, J.C., Characterization of lactobacilli by Southern type hybridization with a Lactobacillus plantarum pyrDFE probe. International Journal of Systematic Bacteriology 46 (1996), 588–594.
7. Bringel, F., Quenee, P., Tailliez, P., Polyphasic investigation of the diversity within Lactobacillus plantarum related strains revealed two L. plantarum subgroups. Systematic Applied Microbiology 24 (2001), 561–571.
8. Busse, H.J., Denner, E.B., Lubitz, W., Classification and identification of bacteria-current approaches to an old problem overview of methods used in bacterial systematics. Journal of Biotechnology 47 (1996), 3–38.
9. Cagno, R.D., Minervini, G., Sgarbi, E., Lazzi, C., Bernini, V., Neviani, E., et al. Comparison of phenotypic (Biolog System) and genotypic (random amplified polymorphic DNA-polymerase chain reaction, RAPD-PCR, and amplified fragment length polymorphism, AFLP) methods for typing Lactobacillus plantarum isolates from raw vegetables and fruits. International Journal of Food Microbiology 143 (2010), 246–253.
10. Chen, M., Li-Ping, L., Rui, W., Wan-Wen, L., Yan, H., Jian, L., et al. PCR detection and PFGE genotype analyses of streptococcal clinical isolates from tilapia in China. Vetenary Microbiology 159 (2012), 526–530.
11. Cocconcelli, P.S., Parisi, M.G., Senini, L., Bottazzi, V., Use of RAPD and 16S rDNA sequencing for the study of Lactobacillus population dynamics in natural whey culture. Letter in Applied Microbiology 25 (1997), 8–12.
12. De las Rivas, B., Marcobal, B., Munoz, R., Development of a multilocus sequence typing method for analysis of Lactobacillus plantarum strains. Microbiology 152 (2006), 85–93.
13. Devi, K.R., Deka, M., Jeyaram, K., Bacterial dynamics during yearlong spontaneous fermentation for production of Ngari, a dry fermented fish product of Northeast India. International Journal of Food Microbiology 191 (2015), 62–71.
14. Dykes, G.A., Bacteriocins: Ecological and evolutionary significance. Trends in Ecology and Evolution 10 (1994), 186–189.
15. Elegado, F.B., Guerra, M.A., Macayan, R.A., Mendoza, H.A., Lizara, M.B., Spectrum of bacteriocin activity of Lactobacillus plantarum BS and fingerprinting by RAPD-PCR. International Journal of Food Microbiology 95 (2004), 11–18.
16. FAO/WHO, Probiotics in Food: Health and nutritional properties and guidelines for evaluation. 2006, World Health Organization and Food and Agriculture Organization of the United Nations, Rome FAO Food Nutrition Pap. 85.
17. Fusco, V., Quero, G.M., Stea, G., Morea, M., Visconti, A., Novel PCR-based Identification of Weissella confusa using an AFLP-derived marker. International Journal of Food Microbiology 145 (2011), 437–443.
18. Holzapfel, W.H., Appropriate starter culture technologies for small scale fermentation in Developing countries. International Journal of Food Microbiology 75 (2002), 197–212.
19. Jeyaram, K., Romi, W., Singh, T.A., Adewumi, G.A., Basanti, K., Oguntoyinbo, F.A., Distinct differentiation of closely related species of Bacillus subtilis group with industrial importance. Journal of Microbiological Methods 87 (2011), 161–164.
20. Jeyaram, K., Romi, W., Singh, T.A., Adewumi, G.A., Devi, R., Devi, S.S., Bacterial species associated with traditional starter cultures used for fermented bamboo shoot production in Manipur state of India. International Journal of Food Microbiology 143 (2010), 1–8.
21. Kostinek, M., Specht, I., Edward, V.A., Schillinger, U., Hertel, C., Holzapfel, W.H., et al. Diversity and technological properties of predominant lactic acid bacteria from fermented cassava used for the preparation of gari, a traditional African food. Systematic and Applied Microbiology 28 (2005), 527–540.
22. LeBlanc, J.G., Milani, C., deGiori, G.S., Sesma, F., vanSinderen, D., Ventura, M., Bacteria as vitamin suppliers to their host: A gut microbiota perspective. Current Opinion in Biotechnology 24 (2013), 160–168.
23. Lechner, S., Mayr, R., Francis, K.P., Prub, B.M., Kaplan, T., WieBner-Gunkel, E., et al. Bacillus weihenstephanensis sp. nov. is a new psychotolerant of the Bacillus group. International Journal of Systematic Evolution and Microbiology 48 (1998), 1373–1382.
24. Lee, H., Baek, H., Lim, S., Hur, J.S., Shim, S., Shin, S., et al. Development of species-specific PCR primers and polyphasic characterization of Lactobacillus sanfranciscensis isolated from Korean sourdough. International Journal of Food Microbiology 200 (2015), 80–86.
25. Leroy, F., De Vuyst, L., Lactic acid bacteria as functional starter cultures for the food fermentation industry. Trends Food Science and Technology 15 (2004), 67–78.
26. Marco, V., Ralf, Z., Specific identification and molecular typing analysis of Lactobacillus johnsonii by using PCR-based methods and pulsed-field gel electrophoresis. FEMS Microbiology Letters 217 (2002), 141–154.
27. Meroth, C.B., Walter, J., Hertel, C., Brandt, M.J., Hammes, W.P., Monitoring the bacterial population dynamics in sourdough fermentation processes by using PCR-denaturing gradient gel electrophoresis. Applied and Environmental Microbiology 69 (2003), 475–482.
28. Mills, D.A., The lactic acid bacteria genome project. Fermentation technology. Journal of Food Science 69 (2004), 29–30.
29. Oguntoyinbo, F.A., Narbad, A., Molecular characterization of lactic acid bacteria and in situ amylase expression during traditional fermentation of cereal foods. Food Microbiology 31 (2012), 254–262.
30. Oguntoyinbo, F.A., Narbad, A., Multifunctional properties of Lactobacillus plantarum strains isolated from fermented cereal foods. Journal of Functional Food 17 (2015), 621–631.
31. Pepe, O., Guiseppe, B., Marilena, A., Giancarlo, M., Danilo, E., Francesco, V., Technological and molecular diversity of Lactobacillus plantarum strains isolated from naturally fermented sourdoughs. Systematic and Applied Microbiology 27 (2004), 443–453.
32. Pulido, R.P., Omar, N.B., Abriouel, H., Lopez, R.I., Canamero, M.M., Galvez, A., Microbiological study of lactic acid fermentation of caper berries by molecular and culture-dependent methods. Applied and Environmental Microbiology 71 (2005), 7872–7879.
33. Roussel, Y., Colmin, C., Simonet, J.M., Decaris, B., Strain characterization, genome size and plasmid content in the L. acidophilus group. Journal of Applied Bacteriology 74 (1993), 549–556.
34. Salvucci, E., LeBlanc, J., Perez, G., Technological properties of Lactic acid bacteria isolated from raw cereal material. LWT - Food Science and Technology 70 (2016), 185–191.
35. Samarzija, D., Sikora, S., Redzepovic, S., Antunac, N., Havranek, J., Application of RAPD analysis for the identification of Lactococcus lactis subsp. Cremoris strains isolated from artisanal cultures. Microbiological Research 157 (2001), 13–17.
36. Sànchez, I., Sesena, S., Palop, L.L., Polyphasic study of the genetic diversity of lactobacilli associated with Almagro eggplants spontaneous fermentation, based on combined numerical analysis of randomly amplified polymorphic DNA and pulse-field gel electrophoresis patterns. Journal of Applied Microbiology 97 (2004), 446–458.
37. Santos, E.M., Jaime, I., Rovira, J., Lyhs, U., Korkeala, H., Björkroth, J., Characterization and identification of lactic acid bacteria in morcilla de Burgos. International Journal of Food Microbiology 97 (2005), 285–296.
38. Sylvie, L., Annette, R., Stephane, G., Michel, G., Lactobacillus helveticus: Strain typing and Genome size estimation by pulsed-field gel electrophoresis. Current Microbiology 34 (1997), 180–185.
39. Tamang, J.P., Tamang, N., Thapa, S., Dewan, S., Tamang, B., Yonzan, H., et al. Microorganism and ethnic value of ethnic fermented foods and alcoholic beverages from North East, India. Indian Journal of Traditional Knowledge 11 (2012), 7–25.
40. Tanganurat, W., Quinquis, B., Leelawatcharamas, V., Bolotin, A., Genotypic and phenotypic characterization of Lactobacillus plantarum strains isolated from Thai fermented fruits and vegetables. Journal of Basic Microbiology 49 (2009), 377–385.
41. Tannock, G.W., Tilsala-Timisjarvi, A., Rodtong, S., Munro, J., Alatossava, T., Identification of Lactobacillus isolates from the gastrointestinal tract, silage, and yoghurt by 16S–23S rRNA gene intergenic spacer region sequence comparisons. Applied and Environmental Microbiology 65 (1999), 4264–4267.
42. Tsafrakidou, P., Bozoudi, D., Pavlidou, S., Kotzamanidis, C., Hatzikamari, M., Zdragas, A., et al. Technological, phenotypic and genotypic characterization of lactobacilli from Graviera Kritis PDO Greek cheese, manufactured at two traditional dairies. LWT - Food Science and Technology 68 (2016), 681–689.
43. Weisburg, W.G., Bams, S.M., Peletiar, D.A., Lane, D.J., 16S ribosomal DNA amplification for phylogenetic study. Journal of Bacteriology 173 (1991), 697–703.
44. Zeljika, C.F., Vladimir, S., Ladija, K., Bela, N., Nevijo, Z., Ivana, F., Identification of lactic acid bacteria isolated from dry fermented sausages. Veterinarski Archive 82 (2012), 265–272.