-
1
-
-
84879248721
-
Yield trends are insufficient to double global crop production by 2050
-
Ray, D.K., et al. Yield trends are insufficient to double global crop production by 2050. PLoS One, 8, 2013, e66428.
-
(2013)
PLoS One
, vol.8
, pp. e66428
-
-
Ray, D.K.1
-
2
-
-
84978259349
-
The impact of genomics technology on adapting plants to climate change
-
D. Edwards J. Batley Springer New York
-
Edwards, D., The impact of genomics technology on adapting plants to climate change. Edwards, D., Batley, J., (eds.) Plant Genomics and Climate Change, 2016, Springer, New York, 173–178.
-
(2016)
Plant Genomics and Climate Change
, pp. 173-178
-
-
Edwards, D.1
-
3
-
-
84961216367
-
Global agricultural intensification during climate change: a role for genomics
-
Abberton, M., et al. Global agricultural intensification during climate change: a role for genomics. Plant Biotechnol. J. 14 (2016), 1095–1098.
-
(2016)
Plant Biotechnol. J.
, vol.14
, pp. 1095-1098
-
-
Abberton, M.1
-
4
-
-
82955195772
-
Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes
-
Janicki, M., et al. Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes. Chromosome Res. 19 (2011), 787–808.
-
(2011)
Chromosome Res.
, vol.19
, pp. 787-808
-
-
Janicki, M.1
-
5
-
-
28944439470
-
Beware of mis-assembled genomes
-
Salzberg, S.L., Yorke, J.A., Beware of mis-assembled genomes. Bioinformatics 21 (2005), 4320–4321.
-
(2005)
Bioinformatics
, vol.21
, pp. 4320-4321
-
-
Salzberg, S.L.1
Yorke, J.A.2
-
6
-
-
84880840905
-
Why assembling plant genome sequences is so challenging
-
Claros, M.G., et al. Why assembling plant genome sequences is so challenging. Biology 1 (2012), 439–459.
-
(2012)
Biology
, vol.1
, pp. 439-459
-
-
Claros, M.G.1
-
7
-
-
70450202132
-
The B73 maize genome: complexity, diversity, and dynamics
-
Schnable, P.S., et al. The B73 maize genome: complexity, diversity, and dynamics. Science 326 (2009), 1112–1115.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
-
8
-
-
28844463698
-
Emerging technologies in DNA sequencing
-
Metzker, M.L., Emerging technologies in DNA sequencing. Genome Res. 15 (2005), 1767–1776.
-
(2005)
Genome Res.
, vol.15
, pp. 1767-1776
-
-
Metzker, M.L.1
-
9
-
-
84968903135
-
Coming of age: ten years of next-generation sequencing technologies
-
Goodwin, S., et al. Coming of age: ten years of next-generation sequencing technologies. Nat. Rev. Genet. 17 (2016), 333–351.
-
(2016)
Nat. Rev. Genet.
, vol.17
, pp. 333-351
-
-
Goodwin, S.1
-
10
-
-
78650909427
-
Limitations of next-generation genome sequence assembly
-
Alkan, C., et al. Limitations of next-generation genome sequence assembly. Nat. Methods 8 (2011), 61–65.
-
(2011)
Nat. Methods
, vol.8
, pp. 61-65
-
-
Alkan, C.1
-
12
-
-
0027485082
-
Ordered restriction maps of Saccharomyces cerevisiae chromosomes constructed by optical mapping
-
Schwartz, D.C., et al. Ordered restriction maps of Saccharomyces cerevisiae chromosomes constructed by optical mapping. Science 262 (1993), 110–114.
-
(1993)
Science
, vol.262
, pp. 110-114
-
-
Schwartz, D.C.1
-
13
-
-
84881496498
-
The genome sequence of the colonial chordate, Botryllus schlosseri
-
Voskoboynik, A., et al. The genome sequence of the colonial chordate, Botryllus schlosseri. Elife, 2, 2013, e00569.
-
(2013)
Elife
, vol.2
, pp. e00569
-
-
Voskoboynik, A.1
-
14
-
-
84907087679
-
Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements
-
McCoy, R.C., et al. Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements. PLoS One, 9, 2014, e106689.
-
(2014)
PLoS One
, vol.9
, pp. e106689
-
-
McCoy, R.C.1
-
15
-
-
84930667103
-
Illumina synthetic long read sequencing allows recovery of missing sequences even in the ‘finished’ C. elegans genome
-
Li, R., et al. Illumina synthetic long read sequencing allows recovery of missing sequences even in the ‘finished’ C. elegans genome. Sci. Rep., 5, 2015, 10814.
-
(2015)
Sci. Rep.
, vol.5
, pp. 10814
-
-
Li, R.1
-
16
-
-
84973532330
-
Genome mapping in plant comparative genomics
-
Chaney, L., et al. Genome mapping in plant comparative genomics. Trends Plant Sci. 21 (2016), 770–780.
-
(2016)
Trends Plant Sci.
, vol.21
, pp. 770-780
-
-
Chaney, L.1
-
17
-
-
84898654757
-
Whole-genome haplotyping using long reads and statistical methods
-
Kuleshov, V., et al. Whole-genome haplotyping using long reads and statistical methods. Nat. Biotechnol. 32 (2014), 261–266.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 261-266
-
-
Kuleshov, V.1
-
18
-
-
84930851165
-
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
-
Berlin, K., et al. Assembling large genomes with single-molecule sequencing and locality-sensitive hashing. Nat. Biotechnol. 33 (2015), 623–630.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 623-630
-
-
Berlin, K.1
-
20
-
-
0031791086
-
Detailed alignment of Saccharum and Sorghum chromosomes: comparative organization of closely related diploid and polyploid genomes
-
Ming, R., et al. Detailed alignment of Saccharum and Sorghum chromosomes: comparative organization of closely related diploid and polyploid genomes. Genetics 150 (1998), 1663–1682.
-
(1998)
Genetics
, vol.150
, pp. 1663-1682
-
-
Ming, R.1
-
21
-
-
84986243076
-
Startups use short-read data to expand long-read sequencing market
-
Eisenstein, M., Startups use short-read data to expand long-read sequencing market. Nat. Biotechnol. 33 (2015), 433–435.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 433-435
-
-
Eisenstein, M.1
-
22
-
-
84960894307
-
Haplotyping germline and cancer genomes with high-throughput linked-read sequencing
-
Zheng, G.X., et al. Haplotyping germline and cancer genomes with high-throughput linked-read sequencing. Nat. Biotechnol. 34 (2016), 303–311.
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 303-311
-
-
Zheng, G.X.1
-
23
-
-
84966549638
-
A hybrid approach for de novo human genome sequence assembly and phasing
-
Mostovoy, Y., et al. A hybrid approach for de novo human genome sequence assembly and phasing. Nat. Methods 13 (2016), 587–590.
-
(2016)
Nat. Methods
, vol.13
, pp. 587-590
-
-
Mostovoy, Y.1
-
24
-
-
84960087088
-
Health and population effects of rare gene knockouts in adult humans with related parents
-
Narasimhan, V.M., et al. Health and population effects of rare gene knockouts in adult humans with related parents. Science 352 (2016), 474–477.
-
(2016)
Science
, vol.352
, pp. 474-477
-
-
Narasimhan, V.M.1
-
25
-
-
84992360007
-
Assembly of the complete Sitka spruce chloroplast genome using 10X Genomics’ gemcode sequencing data
-
Coombe, L., et al. Assembly of the complete Sitka spruce chloroplast genome using 10X Genomics’ gemcode sequencing data. PLoS One, 11, 2016, e0163059.
-
(2016)
PLoS One
, vol.11
, pp. e0163059
-
-
Coombe, L.1
-
26
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
Eid, J., et al. Real-time DNA sequencing from single polymerase molecules. Science 323 (2009), 133–138.
-
(2009)
Science
, vol.323
, pp. 133-138
-
-
Eid, J.1
-
27
-
-
84955151056
-
Error correction and assembly complexity of single molecule sequencing reads
-
Published online June 18, 2014
-
Lee, H., et al. Error correction and assembly complexity of single molecule sequencing reads. bioRxiv, 2014, 10.1101/006395 Published online June 18, 2014.
-
(2014)
bioRxiv
-
-
Lee, H.1
-
28
-
-
84863651532
-
Hybrid error correction and de novo assembly of single-molecule sequencing reads
-
Koren, S., et al. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat. Biotechnol. 30 (2012), 693–700.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 693-700
-
-
Koren, S.1
-
29
-
-
84864518203
-
Pacific biosciences sequencing technology for genotyping and variation discovery in human data
-
Carneiro, M.O., et al. Pacific biosciences sequencing technology for genotyping and variation discovery in human data. BMC Genomics, 13, 2012, 375.
-
(2012)
BMC Genomics
, vol.13
, pp. 375
-
-
Carneiro, M.O.1
-
30
-
-
84880798154
-
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
-
Chin, C.S., et al. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat. Methods 10 (2013), 563–569.
-
(2013)
Nat. Methods
, vol.10
, pp. 563-569
-
-
Chin, C.S.1
-
31
-
-
84906823754
-
Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes
-
Miyamoto, M., et al. Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes. BMC Genomics, 15, 2014, 699.
-
(2014)
BMC Genomics
, vol.15
, pp. 699
-
-
Miyamoto, M.1
-
32
-
-
0034708758
-
A whole-genome assembly of Drosophila
-
Myers, E.W., et al. A whole-genome assembly of Drosophila. Science 287 (2000), 2196–2204.
-
(2000)
Science
, vol.287
, pp. 2196-2204
-
-
Myers, E.W.1
-
33
-
-
84958554065
-
Efficient local alignment discovery amongst noisy long reads
-
D. Brown B. Morgenstern Springer
-
Myers, G., Efficient local alignment discovery amongst noisy long reads. Brown, D., Morgenstern, B., (eds.) Algorithms in Bioinformatics, 2014, Springer, 52–67.
-
(2014)
Algorithms in Bioinformatics
, pp. 52-67
-
-
Myers, G.1
-
34
-
-
84984824728
-
DBG2OLC: efficient assembly of large genomes using long erroneous reads of the third generation sequencing technologies
-
Ye, C., et al. DBG2OLC: efficient assembly of large genomes using long erroneous reads of the third generation sequencing technologies. Sci. Rep., 6, 2016, 31900.
-
(2016)
Sci. Rep.
, vol.6
, pp. 31900
-
-
Ye, C.1
-
35
-
-
84868327508
-
Finished bacterial genomes from shotgun sequence data
-
Ribeiro, F.J., et al. Finished bacterial genomes from shotgun sequence data. Genome Res. 22 (2012), 2270–2277.
-
(2012)
Genome Res.
, vol.22
, pp. 2270-2277
-
-
Ribeiro, F.J.1
-
36
-
-
84860771820
-
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
-
Bankevich, A., et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19 (2012), 455–477.
-
(2012)
J. Comput. Biol.
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
-
38
-
-
84913554630
-
One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly
-
Koren, S., Phillippy, A.M., One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly. Curr. Opin. Microbiol. 23 (2015), 110–120.
-
(2015)
Curr. Opin. Microbiol.
, vol.23
, pp. 110-120
-
-
Koren, S.1
Phillippy, A.M.2
-
39
-
-
84902707563
-
SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information
-
Boetzer, M., Pirovano, W., SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information. BMC Bioinformatics, 15, 2014, 211.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 211
-
-
Boetzer, M.1
Pirovano, W.2
-
40
-
-
84869814079
-
Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology
-
English, A.C., et al. Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology. PLoS One, 7, 2012, e47768.
-
(2012)
PLoS One
, vol.7
, pp. e47768
-
-
English, A.C.1
-
41
-
-
84863664355
-
A hybrid approach for the automated finishing of bacterial genomes
-
Bashir, A., et al. A hybrid approach for the automated finishing of bacterial genomes. Nat. Biotechnol. 30 (2012), 701–707.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 701-707
-
-
Bashir, A.1
-
42
-
-
85019534803
-
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the mega-reads algorithm
-
Published online July 26, 2016
-
Zimin, A.V., et al. Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the mega-reads algorithm. bioRxiv, 2016, 10.1101/066100 Published online July 26, 2016.
-
(2016)
bioRxiv
-
-
Zimin, A.V.1
-
43
-
-
84948661005
-
The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genome
-
Sakai, H., et al. The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genome. Sci. Rep., 5, 2015, 16780.
-
(2015)
Sci. Rep.
, vol.5
, pp. 16780
-
-
Sakai, H.1
-
44
-
-
84948440327
-
Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum
-
VanBuren, R., et al. Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum. Nature 527 (2015), 508–511.
-
(2015)
Nature
, vol.527
, pp. 508-511
-
-
VanBuren, R.1
-
45
-
-
84875898037
-
Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
-
Jia, J., et al. Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature 496 (2013), 91–95.
-
(2013)
Nature
, vol.496
, pp. 91-95
-
-
Jia, J.1
-
46
-
-
84991694364
-
Phased diploid genome assembly with single-molecule real-time sequencing
-
Chin, C.S., et al. Phased diploid genome assembly with single-molecule real-time sequencing. Nat. Methods 13 (2016), 1050–1054.
-
(2016)
Nat. Methods
, vol.13
, pp. 1050-1054
-
-
Chin, C.S.1
-
49
-
-
84970952281
-
MinION analysis and reference consortium: phase 1 data release and analysis
-
Ip, C.L., et al. MinION analysis and reference consortium: phase 1 data release and analysis. F1000Res, 4, 2015, 1075.
-
(2015)
F1000Res
, vol.4
, pp. 1075
-
-
Ip, C.L.1
-
50
-
-
84936764311
-
Scaffolding of a bacterial genome using MinION nanopore sequencing
-
Karlsson, E., et al. Scaffolding of a bacterial genome using MinION nanopore sequencing. Sci. Rep., 5, 2015, 11996.
-
(2015)
Sci. Rep.
, vol.5
, pp. 11996
-
-
Karlsson, E.1
-
51
-
-
84938421951
-
A complete bacterial genome assembled de novo using only nanopore sequencing data
-
Loman, N.J., et al. A complete bacterial genome assembled de novo using only nanopore sequencing data. Nat. Methods 12 (2015), 733–735.
-
(2015)
Nat. Methods
, vol.12
, pp. 733-735
-
-
Loman, N.J.1
-
52
-
-
84905723571
-
Decoding long nanopore sequencing reads of natural DNA
-
Laszlo, A.H., et al. Decoding long nanopore sequencing reads of natural DNA. Nat. Biotechnol. 32 (2014), 829–833.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 829-833
-
-
Laszlo, A.H.1
-
53
-
-
84942518081
-
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
-
Greninger, A.L., et al. Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis. Genome Med., 7, 2015, 99.
-
(2015)
Genome Med.
, vol.7
, pp. 99
-
-
Greninger, A.L.1
-
54
-
-
84946557268
-
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
-
Goodwin, S., et al. Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Genome Res. 25 (2015), 1750–1756.
-
(2015)
Genome Res.
, vol.25
, pp. 1750-1756
-
-
Goodwin, S.1
-
55
-
-
85006047352
-
De novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
-
Published online July 28, 2016
-
Istace, B., et al. De novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer. bioRxiv, 2016, 10.1101/066613 Published online July 28, 2016.
-
(2016)
bioRxiv
-
-
Istace, B.1
-
56
-
-
84943637090
-
De novo sequencing and variant calling with nanopores using PoreSeq
-
Szalay, T., Golovchenko, J.A., De novo sequencing and variant calling with nanopores using PoreSeq. Nat. Biotechnol. 33 (2015), 1087–1091.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 1087-1091
-
-
Szalay, T.1
Golovchenko, J.A.2
-
57
-
-
84926472171
-
Improved data analysis for the MinION nanopore sequencer
-
Jain, M., et al. Improved data analysis for the MinION nanopore sequencer. Nat. Methods 12 (2015), 351–356.
-
(2015)
Nat. Methods
, vol.12
, pp. 351-356
-
-
Jain, M.1
-
58
-
-
84960112669
-
Realtime analysis and visualization of MinION sequencing data with npReader
-
Cao, M.D., et al. Realtime analysis and visualization of MinION sequencing data with npReader. Bioinformatics 32 (2016), 764–766.
-
(2016)
Bioinformatics
, vol.32
, pp. 764-766
-
-
Cao, M.D.1
-
59
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden, E., et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326 (2009), 289–293.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
-
60
-
-
84960380290
-
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
-
Putnam, N.H., et al. Chromosome-scale shotgun assembly using an in vitro method for long-range linkage. Genome Res. 26 (2016), 342–350.
-
(2016)
Genome Res.
, vol.26
, pp. 342-350
-
-
Putnam, N.H.1
-
61
-
-
0032976372
-
Optical mapping of Plasmodium falciparum chromosome 2
-
Jing, J., et al. Optical mapping of Plasmodium falciparum chromosome 2. Genome Res. 9 (1999), 175–181.
-
(1999)
Genome Res.
, vol.9
, pp. 175-181
-
-
Jing, J.1
-
62
-
-
0032727009
-
A shotgun optical map of the entire Plasmodium falciparum genome
-
Lai, Z., et al. A shotgun optical map of the entire Plasmodium falciparum genome. Nat. Genet. 23 (1999), 309–313.
-
(1999)
Nat. Genet.
, vol.23
, pp. 309-313
-
-
Lai, Z.1
-
63
-
-
0033520409
-
Whole-genome shotgun optical mapping of Deinococcus radiodurans
-
Lin, J., et al. Whole-genome shotgun optical mapping of Deinococcus radiodurans. Science 285 (1999), 1558–1562.
-
(1999)
Science
, vol.285
, pp. 1558-1562
-
-
Lin, J.1
-
64
-
-
0034821826
-
Shotgun optical maps of the whole Escherichia coli O157:H7 genome
-
Lim, A., et al. Shotgun optical maps of the whole Escherichia coli O157:H7 genome. Genome Res. 11 (2001), 1584–1593.
-
(2001)
Genome Res.
, vol.11
, pp. 1584-1593
-
-
Lim, A.1
-
65
-
-
0242500934
-
A whole-genome shotgun optical map of Yersinia pestis strain KIM
-
Zhou, S., et al. A whole-genome shotgun optical map of Yersinia pestis strain KIM. Appl. Environ. Microbiol. 68 (2002), 6321–6331.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 6321-6331
-
-
Zhou, S.1
-
66
-
-
0141519284
-
Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly
-
Zhou, S., et al. Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly. Genome Res. 13 (2003), 2142–2151.
-
(2003)
Genome Res.
, vol.13
, pp. 2142-2151
-
-
Zhou, S.1
-
67
-
-
6944255631
-
Shotgun optical mapping of the entire Leishmania major Friedlin genome
-
Zhou, S., et al. Shotgun optical mapping of the entire Leishmania major Friedlin genome. Mol. Biochem. Parasitol. 138 (2004), 97–106.
-
(2004)
Mol. Biochem. Parasitol.
, vol.138
, pp. 97-106
-
-
Zhou, S.1
-
68
-
-
43349084767
-
Scaffolding and validation of bacterial genome assemblies using optical restriction maps
-
Nagarajan, N., et al. Scaffolding and validation of bacterial genome assemblies using optical restriction maps. Bioinformatics 24 (2008), 1229–1235.
-
(2008)
Bioinformatics
, vol.24
, pp. 1229-1235
-
-
Nagarajan, N.1
-
69
-
-
79959212998
-
Landscape of next-generation sequencing technologies
-
Niedringhaus, T.P., Landscape of next-generation sequencing technologies. Anal. Chem. 83 (2011), 4327–4341.
-
(2011)
Anal. Chem.
, vol.83
, pp. 4327-4341
-
-
Niedringhaus, T.P.1
-
70
-
-
84942514778
-
Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool
-
Shelton, J.M., et al. Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool. BMC Genomics, 16, 2015, 734.
-
(2015)
BMC Genomics
, vol.16
, pp. 734
-
-
Shelton, J.M.1
-
71
-
-
84945498007
-
Using optical mapping data for the improvement of vertebrate genome assemblies
-
Howe, K., Wood, J.M., Using optical mapping data for the improvement of vertebrate genome assemblies. Gigascience, 4, 2015, 10.
-
(2015)
Gigascience
, vol.4
, pp. 10
-
-
Howe, K.1
Wood, J.M.2
-
72
-
-
84923794054
-
Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology
-
Cao, H., et al. Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology. Gigascience, 3, 2014, 34.
-
(2014)
Gigascience
, vol.3
, pp. 34
-
-
Cao, H.1
-
73
-
-
84975475885
-
BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes
-
Stankova, H., et al. BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnol. J. 14 (2016), 1523–1531.
-
(2016)
Plant Biotechnol. J.
, vol.14
, pp. 1523-1531
-
-
Stankova, H.1
-
74
-
-
84936992187
-
Optical mapping in plant comparative genomics
-
Tang, H., et al. Optical mapping in plant comparative genomics. Gigascience, 4, 2015, 3.
-
(2015)
Gigascience
, vol.4
, pp. 3
-
-
Tang, H.1
-
75
-
-
84873545544
-
Rapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome
-
Hastie, A.R., et al. Rapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome. PLoS One, 8, 2013, e55864.
-
(2013)
PLoS One
, vol.8
, pp. e55864
-
-
Hastie, A.R.1
-
76
-
-
84906245839
-
Fluorescence in situ hybridization and optical mapping to correct scaffold arrangement in the tomato genome
-
Shearer, L.A., et al. Fluorescence in situ hybridization and optical mapping to correct scaffold arrangement in the tomato genome. G3 4 (2014), 1395–1405.
-
(2014)
G3
, vol.4
, pp. 1395-1405
-
-
Shearer, L.A.1
-
77
-
-
84899917345
-
An improved genome release (version Mt4.0) for the model legume Medicago truncatula
-
Tang, H., et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 15, 2014, 312.
-
(2014)
BMC Genomics
, vol.15
, pp. 312
-
-
Tang, H.1
-
78
-
-
73649103712
-
A single molecule scaffold for the maize genome
-
Zhou, S., et al. A single molecule scaffold for the maize genome. PLoS Genet., 5, 2009, e1000711.
-
(2009)
PLoS Genet.
, vol.5
, pp. e1000711
-
-
Zhou, S.1
-
79
-
-
84890824399
-
Assembly and validation of the genome of the nonmodel basal angiosperm Amborella
-
Chamala, S., et al. Assembly and validation of the genome of the nonmodel basal angiosperm Amborella. Science 342 (2013), 1516–1517.
-
(2013)
Science
, vol.342
, pp. 1516-1517
-
-
Chamala, S.1
-
80
-
-
84871853767
-
The genome of Prunus mume
-
Zhang, Q., et al. The genome of Prunus mume. Nat. Commun., 3, 2012, 1318.
-
(2012)
Nat. Commun.
, vol.3
, pp. 1318
-
-
Zhang, Q.1
-
81
-
-
31144469134
-
Structural variation in the human genome
-
Feuk, L., et al. Structural variation in the human genome. Nat. Rev. Genet. 7 (2006), 85–97.
-
(2006)
Nat. Rev. Genet.
, vol.7
, pp. 85-97
-
-
Feuk, L.1
-
82
-
-
84905107176
-
Structural variations in plant genomes
-
Saxena, R.K., et al. Structural variations in plant genomes. Brief Funct. Genomics 13 (2014), 296–307.
-
(2014)
Brief Funct. Genomics
, vol.13
, pp. 296-307
-
-
Saxena, R.K.1
-
83
-
-
84961213710
-
Towards plant pangenomics
-
Golicz, A.A., et al. Towards plant pangenomics. Plant Biotechnol. J. 14 (2016), 1099–1105.
-
(2016)
Plant Biotechnol. J.
, vol.14
, pp. 1099-1105
-
-
Golicz, A.A.1
-
84
-
-
78649341898
-
Single molecule linear analysis of DNA in nano-channel labeled with sequence specific fluorescent probes
-
Das, S.K., et al. Single molecule linear analysis of DNA in nano-channel labeled with sequence specific fluorescent probes. Nucleic Acids Res., 38, 2010, e177.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. e177
-
-
Das, S.K.1
-
85
-
-
0037101840
-
Chromosomal regions containing high-density and ambiguously mapped putative single nucleotide polymorphisms (SNPs) correlate with segmental duplications in the human genome
-
Estivill, X., et al. Chromosomal regions containing high-density and ambiguously mapped putative single nucleotide polymorphisms (SNPs) correlate with segmental duplications in the human genome. Hum. Mol. Genet. 11 (2002), 1987–1995.
-
(2002)
Hum. Mol. Genet.
, vol.11
, pp. 1987-1995
-
-
Estivill, X.1
-
86
-
-
0036143156
-
Systematic identification of novel protein domain families associated with nuclear functions
-
Doerks, T., et al. Systematic identification of novel protein domain families associated with nuclear functions. Genome Res. 12 (2002), 47–56.
-
(2002)
Genome Res.
, vol.12
, pp. 47-56
-
-
Doerks, T.1
-
87
-
-
35649003378
-
Validation of rice genome sequence by optical mapping
-
Zhou, S., et al. Validation of rice genome sequence by optical mapping. BMC Genomics, 8, 2007, 278.
-
(2007)
BMC Genomics
, vol.8
, pp. 278
-
-
Zhou, S.1
-
88
-
-
84938423867
-
Assembly and diploid architecture of an individual human genome via single-molecule technologies
-
Pendleton, M., et al. Assembly and diploid architecture of an individual human genome via single-molecule technologies. Nat. Methods 12 (2015), 780–786.
-
(2015)
Nat. Methods
, vol.12
, pp. 780-786
-
-
Pendleton, M.1
-
89
-
-
85019531267
-
The next revolution in genomics: exploring complex genome assembly to pan-genome interconnection
-
Kol, G., The next revolution in genomics: exploring complex genome assembly to pan-genome interconnection. Proceedings of the Plant & Animal Genome Conference XXIV, 2016, W3289.
-
(2016)
Proceedings of the Plant & Animal Genome Conference XXIV
, pp. W3289
-
-
Kol, G.1
-
90
-
-
85109901983
-
The first sugarcane genome assembly: how can we use it?
-
Aitken, K., et al. The first sugarcane genome assembly: how can we use it?. Proc. Aust. Soc. Sugar Cane Technol. 38 (2016), 193–199.
-
(2016)
Proc. Aust. Soc. Sugar Cane Technol.
, vol.38
, pp. 193-199
-
-
Aitken, K.1
-
91
-
-
84870260198
-
Analysis of the bread wheat genome using whole-genome shotgun sequencing
-
Brenchley, R., et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature 491 (2012), 705–710.
-
(2012)
Nature
, vol.491
, pp. 705-710
-
-
Brenchley, R.1
-
92
-
-
84904382612
-
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
-
International Wheat Genome Sequencing, C, A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science, 345, 2014, 1251788.
-
(2014)
Science
, vol.345
, pp. 1251788
-
-
International Wheat Genome Sequencing, C,1
-
93
-
-
84925513772
-
A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome
-
Chapman, J.A., et al. A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome. Genome Biol., 16, 2015, 26.
-
(2015)
Genome Biol.
, vol.16
, pp. 26
-
-
Chapman, J.A.1
-
94
-
-
85011622078
-
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations
-
Published online Novenber 4, 2016
-
Clavijo, B.J., et al. An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations. bioRxiv, 2016, 10.1101/080796 Published online Novenber 4, 2016.
-
(2016)
bioRxiv
-
-
Clavijo, B.J.1
-
95
-
-
85006263051
-
Draft assembly of elite inbred line PH207 provides insights into genomic and transcriptome diversity in maize
-
Hirsch, C.N., et al. Draft assembly of elite inbred line PH207 provides insights into genomic and transcriptome diversity in maize. Plant Cell 28 (2016), 2700–2714.
-
(2016)
Plant Cell
, vol.28
, pp. 2700-2714
-
-
Hirsch, C.N.1
-
96
-
-
84863693752
-
The tomato genome sequence provides insights into fleshy fruit evolution
-
Tomato Genome, C., The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485 (2012), 635–641.
-
(2012)
Nature
, vol.485
, pp. 635-641
-
-
Tomato Genome, C.1
-
97
-
-
84923019049
-
De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
-
Li, Y.H., et al. De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits. Nat. Biotechnol. 32 (2014), 1045–1052.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 1045-1052
-
-
Li, Y.H.1
-
98
-
-
84899077311
-
Dissection of the octoploid strawberry genome by deep sequencing of the genomes of Fragaria species
-
Hirakawa, H., et al. Dissection of the octoploid strawberry genome by deep sequencing of the genomes of Fragaria species. DNA Res. 21 (2014), 169–181.
-
(2014)
DNA Res.
, vol.21
, pp. 169-181
-
-
Hirakawa, H.1
-
99
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E.S., et al. Initial sequencing and analysis of the human genome. Nature 409 (2001), 860–921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
-
100
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies, M., et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature, 437, 2005.
-
(2005)
Nature
, vol.437
-
-
Margulies, M.1
|