메뉴 건너뛰기




Volumn 345, Issue 6194, 2014, Pages

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(96)  Lukaszewski, Adam J g   Alberti, Adriana o   Sharpe, Andrew r   Kilian, Andrzej ah   Stanca, Antonio Michele ad   Keller, Beat ac   Clavijo, Bernardo J j   Friebe, Bernd f   Gill, Bikram f   Wulff, Brande w   Chapman, Brett af   Steuernagel, Burkhard w   Feuillet, Catherine e   Viseux, Claire ab   Pozniak, Curtis d   Rokhsar, Daniel S y   Klassen, Darrin r   Edwards, David s,t   Akhunov, Eduard f   Paux, Etienne n   more..


Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOME; GENE EXPRESSION; GENETIC MARKER; GENOME; POLYPLOIDY; WHEAT;

EID: 84904382612     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.1251788     Document Type: Article
Times cited : (1346)

References (87)
  • 1
    • 79960949654 scopus 로고    scopus 로고
    • Climate trends and global crop production since 1980
    • doi: 10.1126/science.1204531; pmid: 21551030
    • D. B. Lobell, W. Schlenker, J. Costa-Roberts, Climate trends and global crop production since 1980. Science 333, 616-620 (2011). doi: 10.1126/science.1204531; pmid: 21551030
    • (2011) Science , vol.333 , pp. 616-620
    • Lobell, D.B.1    Schlenker, W.2    Costa-Roberts, J.3
  • 2
    • 84882705546 scopus 로고    scopus 로고
    • Food and Agriculture Organization (FAO) of the United Nations, FAO cereal supply and demand brief (2013); www.fao.org/worldfoodsituation/csdb/en/.
    • (2013) FAO Cereal Supply and Demand Brief
  • 3
    • 0037043689 scopus 로고    scopus 로고
    • Agricultural sustainability and intensive production practices
    • doi: 10.1038/nature01014; pmid: 12167873
    • D. Tilman, K. G. Cassman, P. A. Matson, R. Naylor, S. Polasky, Agricultural sustainability and intensive production practices. Nature 418, 671-677 (2002). doi: 10.1038/nature01014; pmid: 12167873
    • (2002) Nature , vol.418 , pp. 671-677
    • Tilman, D.1    Cassman, K.G.2    Matson, P.A.3    Naylor, R.4    Polasky, S.5
  • 4
    • 80054981256 scopus 로고    scopus 로고
    • Solutions for a cultivated planet
    • doi: 10.1038/nature10452; pmid: 21993620
    • J. A. Foley et al., Solutions for a cultivated planet. Nature 478, 337-342 (2011). doi: 10.1038/nature10452; pmid: 21993620
    • (2011) Nature , vol.478 , pp. 337-342
    • Foley, J.A.1
  • 5
    • 84887796531 scopus 로고    scopus 로고
    • Organisation for Economic Cooperation and Development (OECD)/FAO, OECD, Paris, doi: 10.1787/agr-outlook-2013-en
    • Organisation for Economic Cooperation and Development (OECD)/FAO, OECD-FAO Agricultural Outlook 2013 (OECD, Paris, 2013); doi: 10.1787/agr-outlook-2013-en.
    • (2013) OECD-FAO Agricultural Outlook 2013
  • 6
    • 33645007207 scopus 로고    scopus 로고
    • Phylogenetic relationships of Triticum and Aegilops and evidence for the origin of the A, B, and D genomes of common wheat (Triticum aestivum)
    • doi: 10.1016/j.ympev.2006.01.023; pmid: 16504543
    • G. Petersen, O. Seberg, M. Yde, K. Berthelsen, Phylogenetic relationships of Triticum and Aegilops and evidence for the origin of the A, B, and D genomes of common wheat (Triticum aestivum). Mol. Phylogenet. Evol. 39, 70-82 (2006). doi: 10.1016/j.ympev.2006.01.023; pmid: 16504543
    • (2006) Mol. Phylogenet. Evol. , vol.39 , pp. 70-82
    • Petersen, G.1    Seberg, O.2    Yde, M.3    Berthelsen, K.4
  • 7
    • 0001801997 scopus 로고
    • From staple crop to extinction? The archaeology and history of the hulled wheats
    • S. Padulosi, K. Hammer, J. Heller, Eds. International Plant Genetic Resources Institute, Rome
    • M. Nesbitt, D. Samuel, "From staple crop to extinction? The archaeology and history of the hulled wheats," in Hulled Wheat: Proceedings of the First International Workshop on Hulled Wheats, S. Padulosi, K. Hammer, J. Heller, Eds. (International Plant Genetic Resources Institute, Rome, 1995), pp. 41-102.
    • (1995) Hulled Wheat: Proceedings of the First International Workshop on Hulled Wheats , pp. 41-102
    • Nesbitt, M.1    Samuel, D.2
  • 8
    • 0035837422 scopus 로고    scopus 로고
    • The Ph1 locus is needed to ensure specific somatic and meiotic centromere association
    • doi: 10.1038/35075597; pmid: 11346798
    • E. Martinez-Perez, P. Shaw, G. Moore, The Ph1 locus is needed to ensure specific somatic and meiotic centromere association. Nature 411, 204-207 (2001). doi: 10.1038/35075597; pmid: 11346798
    • (2001) Nature , vol.411 , pp. 204-207
    • Martinez-Perez, E.1    Shaw, P.2    Moore, G.3
  • 9
    • 49249111151 scopus 로고    scopus 로고
    • Genome size and genome evolution in diploid Triticeae species
    • doi: 10.1139/G07-083; pmid: 18059548
    • T. Eilam et al., Genome size and genome evolution in diploid Triticeae species. Genome 50, 1029- 1037 (2007). doi: 10.1139/G07-083; pmid: 18059548
    • (2007) Genome , vol.50 , pp. 1029-1037
    • Eilam, T.1
  • 10
    • 79959839889 scopus 로고    scopus 로고
    • Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives
    • doi: 10.1105/tpc.111.086629; pmid: 21622801
    • T. Wicker et al., Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell 23, 1706-1718 (2011). doi: 10.1105/tpc.111.086629; pmid: 21622801
    • (2011) Plant Cell , vol.23 , pp. 1706-1718
    • Wicker, T.1
  • 11
    • 67650100882 scopus 로고    scopus 로고
    • TriFLDB: A database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics
    • doi: 10.1104/pp.109.138214; pmid: 19448038
    • K. Mochida, T. Yoshida, T. Sakurai, Y. Ogihara, K. Shinozaki, TriFLDB: A database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics. Plant Physiol. 150, 1135-1146 (2009). doi: 10.1104/pp.109.138214; pmid: 19448038
    • (2009) Plant Physiol. , vol.150 , pp. 1135-1146
    • Mochida, K.1    Yoshida, T.2    Sakurai, T.3    Ogihara, Y.4    Shinozaki, K.5
  • 12
    • 67649388186 scopus 로고    scopus 로고
    • Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays
    • doi: 10.1186/1471-2164-10-251; pmid: 19480702
    • A. N. Bernardo et al., Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays. BMC Genomics 10, 251 (2009). doi: 10.1186/1471-2164-10-251; pmid: 19480702
    • (2009) BMC Genomics , vol.10 , pp. 251
    • Bernardo, A.N.1
  • 13
    • 84872127434 scopus 로고    scopus 로고
    • Prevalence of gene expression additivity in genetically stable wheat allohexaploids
    • doi: 10.1111/nph.12108; pmid: 23278496
    • H. Chelaifa et al., Prevalence of gene expression additivity in genetically stable wheat allohexaploids. New Phytol. 197, 730-736 (2013). doi: 10.1111/nph.12108; pmid: 23278496
    • (2013) New Phytol. , vol.197 , pp. 730-736
    • Chelaifa, H.1
  • 14
    • 47249151786 scopus 로고    scopus 로고
    • Surveying expression level polymorphism and single-feature polymorphism in near-isogenic wheat lines differing for the Yr5 stripe rust resistance locus
    • doi: 10.1007/s00122-008-0784-5; pmid: 18470504
    • T. E. Coram, M. L. Settles, M. Wang, X. Chen, Surveying expression level polymorphism and single-feature polymorphism in near-isogenic wheat lines differing for the Yr5 stripe rust resistance locus. Theor. Appl. Genet. 117, 401 -411 (2008). doi: 10.1007/s00122-008-0784-5; pmid: 18470504
    • (2008) Theor. Appl. Genet. , vol.117 , pp. 401-411
    • Coram, T.E.1    Settles, M.L.2    Wang, M.3    Chen, X.4
  • 15
    • 8544273197 scopus 로고    scopus 로고
    • A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat
    • doi: 10.1534/genetics.104.034868; pmid: 15514046
    • L. L. Qi et al., A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat. Genetics 168, 701-712 (2004). doi: 10.1534/genetics.104.034868; pmid: 15514046
    • (2004) Genetics , vol.168 , pp. 701-712
    • Qi, L.L.1
  • 16
    • 84875886528 scopus 로고    scopus 로고
    • Draft genome of the wheat A-genome progenitor Triticum urartu
    • doi: 10.1038/nature11997; pmid: 23535596
    • H. Q. Ling et al., Draft genome of the wheat A-genome progenitor Triticum urartu. Nature 496, 87-90 (2013). doi: 10.1038/nature11997; pmid: 23535596
    • (2013) Nature , vol.496 , pp. 87-90
    • Ling, H.Q.1
  • 17
    • 84875898037 scopus 로고    scopus 로고
    • Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    • doi: 10.1038/nature12028; pmid: 23535592
    • J. Jia et al., Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature 496, 91-95 (2013). doi: 10.1038/nature12028; pmid: 23535592
    • (2013) Nature , vol.496 , pp. 91-95
    • Jia, J.1
  • 18
    • 84870260198 scopus 로고    scopus 로고
    • Analysis of the bread wheat genome using whole-genome shotgun sequencing
    • doi: 10.1038/nature11650; pmid: 23192148
    • R. Brenchley et al., Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature 491, 705-710 (2012). doi: 10.1038/nature11650; pmid: 23192148
    • (2012) Nature , vol.491 , pp. 705-710
    • Brenchley, R.1
  • 19
    • 84875633402 scopus 로고    scopus 로고
    • Discovery and development of exomebased, co-dominant single nucleotide polymorphism markers in hexaploid wheat (Triticum aestivum L.)
    • doi: 10.1111/pbi.12009; pmid: 23279710
    • A. M. Allen et al., Discovery and development of exomebased, co-dominant single nucleotide polymorphism markers in hexaploid wheat (Triticum aestivum L.). Plant Biotechnol. J. 11, 279-295 (2013). doi: 10.1111/pbi.12009; pmid: 23279710
    • (2013) Plant Biotechnol. J. , vol.11 , pp. 279-295
    • Allen, A.M.1
  • 20
    • 84879236954 scopus 로고    scopus 로고
    • Separating homeologs by phasing in the tetraploid wheat transcriptome
    • doi: 10.1186/gb-2013-14-6-r66; pmid: 23800085
    • K. V. Krasileva et al., Separating homeologs by phasing in the tetraploid wheat transcriptome. Genome Biol. 14, R66 (2013). doi: 10.1186/gb-2013-14-6- r66; pmid: 23800085
    • (2013) Genome Biol. , vol.14
    • Krasileva, K.V.1
  • 21
    • 84881474230 scopus 로고    scopus 로고
    • Sequence-based mapping of the polyploid wheat genome
    • C. Saintenac, D. Jiang, S. Wang, E. Akhunov, Sequence-based mapping of the polyploid wheat genome. G3 3, 1105-1114 (2013).
    • (2013) G3 , vol.3 , pp. 1105-1114
    • Saintenac, C.1    Jiang, D.2    Wang, S.3    Akhunov, E.4
  • 22
    • 0001440778 scopus 로고
    • The telocentric chromosomes of common wheat
    • S. Ramanujam, Ed. Indian Agricultural Research Institute, New Delhi
    • E. Sears, L. Sears, "The telocentric chromosomes of common wheat," in Proceedings 5th International Wheat Genetics Symposium, S. Ramanujam, Ed. (Indian Agricultural Research Institute, New Delhi, 1978) vol. 1, pp. 389-407.
    • (1978) Proceedings 5th International Wheat Genetics Symposium , vol.1 , pp. 389-407
    • Sears, E.1    Sears, L.2
  • 23
    • 84904390032 scopus 로고    scopus 로고
    • A reference sequence of wheat chromosome 3B reveals structural and functional compartmentalization
    • F. Choulet et al., A reference sequence of wheat chromosome 3B reveals structural and functional compartmentalization. Science 345, 1249721 (2014).
    • (2014) Science , vol.345 , pp. 1249721
    • Choulet, F.1
  • 24
    • 77955284781 scopus 로고    scopus 로고
    • Development of chromosome-specific BAC resources for genomics of bread wheat
    • doi: 10.1159/000313072; pmid: 20501977
    • J. Šafář et al., Development of chromosome-specific BAC resources for genomics of bread wheat. Cytogenet. Genome Res. 129, 211-223 (2010). doi: 10.1159/000313072; pmid: 20501977
    • (2010) Cytogenet. Genome Res. , vol.129 , pp. 211-223
    • Šafář, J.1
  • 25
    • 2142803437 scopus 로고    scopus 로고
    • Materials and methods are available as supporting materials on
    • Materials and methods are available as supporting materials on Science Online.
    • Science Online
  • 26
    • 66449136667 scopus 로고    scopus 로고
    • ABySS: A parallel assembler for short read sequence data
    • doi: 10.1101/gr.089532.108; pmid: 19251739
    • J. T. Simpson et al., ABySS: A parallel assembler for short read sequence data. Genome Res. 19, 1117-1123 (2009). doi: 10.1101/gr.089532.108; pmid: 19251739
    • (2009) Genome Res. , vol.19 , pp. 1117-1123
    • Simpson, J.T.1
  • 27
    • 84870265846 scopus 로고    scopus 로고
    • A physical, genetic, and functional sequence assembly of the barley genome
    • pmid: 23075845
    • K. F. Mayer et al., A physical, genetic, and functional sequence assembly of the barley genome. Nature 491, 711-716 (2012). pmid: 23075845
    • (2012) Nature , vol.491 , pp. 711-716
    • Mayer, K.F.1
  • 28
    • 56549086632 scopus 로고    scopus 로고
    • A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes
    • doi: 10.1186/1471-2164-9-517; pmid: 18976482
    • S. Kurtz, A. Narechania, J. C. Stein, D. Ware, A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 9, 517 (2008). doi: 10.1186/1471-2164-9-517; pmid: 18976482
    • (2008) BMC Genomics , vol.9 , pp. 517
    • Kurtz, S.1    Narechania, A.2    Stein, J.C.3    Ware, D.4
  • 29
    • 68149144366 scopus 로고    scopus 로고
    • Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
    • doi: 10.1101/gr.091678.109; pmid: 19478138
    • J. D. Hollister, B. S. Gaut, Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res. 19, 1419-1428 (2009). doi: 10.1101/gr.091678.109; pmid: 19478138
    • (2009) Genome Res. , vol.19 , pp. 1419-1428
    • Hollister, J.D.1    Gaut, B.S.2
  • 30
    • 84870297952 scopus 로고    scopus 로고
    • Subgenomic analysis of microRNAs in polyploid wheat
    • doi: 10.1007/s10142-012-0285-0; pmid: 22592659
    • M. Kantar et al., Subgenomic analysis of microRNAs in polyploid wheat. Funct. Integr. Genomics 12, 465-479 (2012). doi: 10.1007/s10142-012-0285-0; pmid: 22592659
    • (2012) Funct. Integr. Genomics , vol.12 , pp. 465-479
    • Kantar, M.1
  • 31
    • 84864020757 scopus 로고    scopus 로고
    • Sorting the wheat from the chaff: Identifying miRNAs in genomic survey sequences of Triticum aestivum chromosome 1AL
    • doi: 10.1371/journal.pone.0040859; pmid: 22815845
    • S. J. Lucas, H. Budak, Sorting the wheat from the chaff: Identifying miRNAs in genomic survey sequences of Triticum aestivum chromosome 1AL. PLOS ONE 7, e40859 (2012). doi: 10.1371/journal.pone.0040859; pmid: 22815845
    • (2012) PLOS ONE , vol.7
    • Lucas, S.J.1    Budak, H.2
  • 32
    • 83455168092 scopus 로고    scopus 로고
    • Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins
    • doi: 10.4161/mge.1.1.15766; pmid: 22016841
    • G. M. Borchert et al., Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins. Mob. Genet. Elements 1, 8- 17 (2011). doi: 10.4161/mge.1.1.15766; pmid: 22016841
    • (2011) Mob. Genet. Elements , vol.1 , pp. 8-17
    • Borchert, G.M.1
  • 33
    • 76749150030 scopus 로고    scopus 로고
    • Genome sequencing and analysis of themodel grass Brachypodium distachyon
    • International Brachypodium Initiative, doi: 10.1038/nature08747; pmid: 20148030
    • International Brachypodium Initiative, Genome sequencing and analysis of themodel grass Brachypodium distachyon. Nature 463, 763-768 (2010). doi: 10.1038/nature08747; pmid: 20148030
    • (2010) Nature , vol.463 , pp. 763-768
  • 34
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International Rice Genome Sequencing Project, doi: 10.1038/nature03895; pmid: 16100779
    • International Rice Genome Sequencing Project, The map-based sequence of the rice genome. Nature 436, 793-800 (2005). doi: 10.1038/nature03895; pmid: 16100779
    • (2005) Nature , vol.436 , pp. 793-800
  • 35
    • 58449137410 scopus 로고    scopus 로고
    • The Sorghum bicolor genome and the diversification of grasses
    • doi: 10.1038/nature07723; pmid: 19189423
    • A. H. Paterson et al., The Sorghum bicolor genome and the diversification of grasses. Nature 457, 551-556 (2009). doi: 10.1038/nature07723; pmid: 19189423
    • (2009) Nature , vol.457 , pp. 551-556
    • Paterson, A.H.1
  • 36
    • 77955908237 scopus 로고    scopus 로고
    • Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces
    • doi: 10.1105/tpc.110.074187; pmid: 20581307
    • F. Choulet et al., Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell 22, 1686-1701 (2010). doi: 10.1105/tpc.110.074187; pmid: 20581307
    • (2010) Plant Cell , vol.22 , pp. 1686-1701
    • Choulet, F.1
  • 37
    • 77956277181 scopus 로고    scopus 로고
    • Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq
    • doi: 10.1101/gr.106120.110; pmid: 20627892
    • T. Lu et al., Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq. Genome Res. 20, 1238-1249 (2010). doi: 10.1101/gr.106120.110; pmid: 20627892
    • (2010) Genome Res. , vol.20 , pp. 1238-1249
    • Lu, T.1
  • 38
    • 0142104045 scopus 로고    scopus 로고
    • Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
    • doi: 10.1038/nature01266; pmid: 12466851
    • Y. Okazaki et al., Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature 420, 563-573 (2002). doi: 10.1038/nature01266; pmid: 12466851
    • (2002) Nature , vol.420 , pp. 563-573
    • Okazaki, Y.1
  • 39
    • 84861890038 scopus 로고    scopus 로고
    • Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis
    • doi: 10.1101/gr.134106.111; pmid: 22391557
    • Y. Marquez, J. W. Brown, C. Simpson, A. Barta, M. Kalyna, Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res. 22, 1184-1195 (2012). doi: 10.1101/gr.134106.111; pmid: 22391557
    • (2012) Genome Res. , vol.22 , pp. 1184-1195
    • Marquez, Y.1    Brown, J.W.2    Simpson, C.3    Barta, A.4    Kalyna, M.5
  • 40
    • 84888402156 scopus 로고    scopus 로고
    • Reticulate evolution of the rye genome
    • doi: 10.1105/tpc.113.114553; pmid: 24104565
    • M. M. Martis et al., Reticulate evolution of the rye genome. Plant Cell 25, 3685-3698 (2013). doi: 10.1105/tpc.113.114553; pmid: 24104565
    • (2013) Plant Cell , vol.25 , pp. 3685-3698
    • Martis, M.M.1
  • 41
    • 84856260308 scopus 로고    scopus 로고
    • Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content
    • doi: 10.1111/j.1365-313X.2011.04808.x; pmid: 21974774
    • P. Hernandez et al., Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content. Plant J. 69, 377-386 (2012). doi: 10.1111/j.1365-313X.2011.04808. x; pmid: 21974774
    • (2012) Plant J. , vol.69 , pp. 377-386
    • Hernandez, P.1
  • 42
    • 84896737705 scopus 로고    scopus 로고
    • Sequence-based analysis of translocations and inversions in bread wheat (Triticum aestivum L.)
    • doi: 10.1371/journal.pone.0079329; pmid: 24260197
    • J. Ma et al., Sequence-based analysis of translocations and inversions in bread wheat (Triticum aestivum L.). PLOS ONE 8, e79329 (2013). doi: 10.1371/journal.pone.0079329; pmid: 24260197
    • (2013) PLOS ONE , vol.8
    • Ma, J.1
  • 43
    • 79959461113 scopus 로고    scopus 로고
    • Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae)
    • doi: 10.1186/1471-2148-11-181; pmid: 21702931
    • J. S. Escobar et al., Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae). BMC Evol. Biol. 11, 181 (2011). doi: 10.1186/1471-2148-11-181; pmid: 21702931
    • (2011) BMC Evol. Biol. , vol.11 , pp. 181
    • Escobar, J.S.1
  • 44
    • 84896708684 scopus 로고    scopus 로고
    • Reticulated origin of domesticated emmer wheat supports a dynamic model for the emergence of agriculture in the fertile crescent
    • doi: 10.1371/journal. pone.0081955; pmid: 24312385
    • P. Civáò, Z. Ivanièová, T. A. Brown, Reticulated origin of domesticated emmer wheat supports a dynamic model for the emergence of agriculture in the fertile crescent. PLOS ONE 8, e81955 (2013). doi: 10.1371/journal. pone.0081955; pmid: 24312385
    • (2013) PLOS ONE , vol.8
    • Civáò, P.1    Ivanièová, Z.2    Brown, T.A.3
  • 45
    • 84904402814 scopus 로고    scopus 로고
    • Ancient hybridizations among the ancestral genomes of bread wheat
    • T. Marcussen et al., Ancient hybridizations among the ancestral genomes of bread wheat. Science 345, 1250092 (2014).
    • (2014) Science , vol.345 , pp. 1250092
    • Marcussen, T.1
  • 46
    • 32544454998 scopus 로고    scopus 로고
    • Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat
    • doi: 10.1038/nature04434; pmid: 16467840
    • S. Griffiths et al., Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat. Nature 439, 749-752 (2006). doi: 10.1038/nature04434; pmid: 16467840
    • (2006) Nature , vol.439 , pp. 749-752
    • Griffiths, S.1
  • 47
    • 70349635850 scopus 로고    scopus 로고
    • Gene content and virtual gene order of barley chromosome 1H
    • doi: 10.1104/pp.109.142612; pmid: 19692534
    • K. F. X. Mayer et al., Gene content and virtual gene order of barley chromosome 1H. Plant Physiol. 151, 496-505 (2009). doi: 10.1104/pp.109.142612; pmid: 19692534
    • (2009) Plant Physiol. , vol.151 , pp. 496-505
    • Mayer, K.F.X.1
  • 48
    • 0029334974 scopus 로고
    • Cereal genome evolution. Grasses, line up and form a circle
    • doi: 10.1016/S0960-9822(95)00148-5; pmid: 7583118
    • G. Moore, K. M. Devos, Z. Wang, M. D. Gale, Cereal genome evolution. Grasses, line up and form a circle. Curr. Biol. 5, 737-739 (1995). doi: 10.1016/S0960-9822(95)00148-5; pmid: 7583118
    • (1995) Curr. Biol. , vol.5 , pp. 737-739
    • Moore, G.1    Devos, K.M.2    Wang, Z.3    Gale, M.D.4
  • 49
    • 84877344186 scopus 로고    scopus 로고
    • A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor
    • doi: 10.1073/pnas.1219082110; pmid: 23610408
    • M. C. Luo et al., A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. Proc. Natl. Acad. Sci. U.S.A. 110, 7940-7945 (2013). doi: 10.1073/pnas.1219082110; pmid: 23610408
    • (2013) Proc. Natl. Acad. Sci. U.S.A. , vol.110 , pp. 7940-7945
    • Luo, M.C.1
  • 50
    • 84886793453 scopus 로고    scopus 로고
    • Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)
    • doi: 10.1111/tpj.12319; pmid: 23998490
    • M. Mascher et al., Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). Plant J. 76, 718-727 (2013). doi: 10.1111/tpj.12319; pmid: 23998490
    • (2013) Plant J. , vol.76 , pp. 718-727
    • Mascher, M.1
  • 51
    • 80855125628 scopus 로고    scopus 로고
    • Reconstruction of the synthetic W7984 x Opata M85 wheat reference population
    • doi: 10.1139/g11-054; pmid: 21999208
    • M. E. Sorrells et al., Reconstruction of the synthetic W7984 x Opata M85 wheat reference population. Genome 54, 875-882 (2011). doi: 10.1139/g11-054; pmid: 21999208
    • (2011) Genome , vol.54 , pp. 875-882
    • Sorrells, M.E.1
  • 52
    • 0037500141 scopus 로고    scopus 로고
    • Evolution by gene duplication: An update
    • doi: 10.1016/S0169-5347(03)00033-8
    • J. Zhang, Evolution by gene duplication: An update. Trends Ecol. Evol. 18, 292-298 (2003). doi: 10.1016/S0169-5347(03)00033-8
    • (2003) Trends Ecol. Evol. , vol.18 , pp. 292-298
    • Zhang, J.1
  • 53
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • doi: 10.1101/gr.1224503; pmid: 12952885
    • L. Li, C. J. Stoeckert Jr., D. S. Roos, OrthoMCL: Identification of ortholog groups for eukaryotic genomes. Genome Res. 13, 2178-2189 (2003). doi: 10.1101/gr.1224503; pmid: 12952885
    • (2003) Genome Res. , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert Jr., C.J.2    Roos, D.S.3
  • 54
    • 0842285397 scopus 로고    scopus 로고
    • Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments
    • doi: 10.1038/sj.emboj.7600024; pmid: 14685272
    • R. Koszul, S. Caburet, B. Dujon, G. Fischer, Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments. EMBO J. 23, 234 -243 (2004). doi: 10.1038/sj.emboj.7600024; pmid: 14685272
    • (2004) EMBO J. , vol.23 , pp. 234-243
    • Koszul, R.1    Caburet, S.2    Dujon, B.3    Fischer, G.4
  • 55
    • 84862018035 scopus 로고    scopus 로고
    • Reference genome sequence of the model plant Setaria
    • doi: 10.1038/nbt.2196; pmid: 22580951
    • J. L. Bennetzen et al., Reference genome sequence of the model plant Setaria. Nat. Biotechnol. 30, 555-561 (2012). doi: 10.1038/nbt.2196; pmid: 22580951
    • (2012) Nat. Biotechnol. , vol.30 , pp. 555-561
    • Bennetzen, J.L.1
  • 56
    • 70450202132 scopus 로고    scopus 로고
    • The B73 maize genome: Complexity, diversity, and dynamics
    • doi: 10.1126/science.1178534; pmid: 19965430
    • P. S. Schnable et al., The B73 maize genome: Complexity, diversity, and dynamics. Science 326, 1112-1115 (2009). doi: 10.1126/science.1178534; pmid: 19965430
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1
  • 57
    • 38549136871 scopus 로고    scopus 로고
    • The Rice Annotation Project Database (RAP-DB): 2008 Update
    • pmid: 18089549
    • T. Tanaka et al., The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res. 36, D1028-D1033 (2008).pmid: 18089549
    • (2008) Nucleic Acids Res. , vol.36
    • Tanaka, T.1
  • 58
    • 0034860131 scopus 로고    scopus 로고
    • Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group
    • doi: 10.1105/tpc.13.8.1735; pmid: 11487689
    • H. Ozkan, A. A. Levy, M. Feldman, Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group. Plant Cell 13, 1735-1747 (2001). doi: 10.1105/tpc.13.8.1735; pmid: 11487689
    • (2001) Plant Cell , vol.13 , pp. 1735-1747
    • Ozkan, H.1    Levy, A.A.2    Feldman, M.3
  • 59
    • 84862777707 scopus 로고    scopus 로고
    • Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin
    • doi: 10.1016/j.cub.2011.12.027; pmid: 22264605
    • R. J. Buggs et al., Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin. Curr. Biol. 22, 248-252 (2012). doi: 10.1016/j.cub.2011.12.027; pmid: 22264605
    • (2012) Curr. Biol. , vol.22 , pp. 248-252
    • Buggs, R.J.1
  • 60
    • 84871428041 scopus 로고    scopus 로고
    • Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
    • doi: 10.1038/nature11798; pmid: 23257886
    • A. H. Paterson et al., Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature 492, 423-427 (2012). doi: 10.1038/nature11798; pmid: 23257886
    • (2012) Nature , vol.492 , pp. 423-427
    • Paterson, A.H.1
  • 61
    • 0016197604 scopus 로고
    • Amino acid difference formula to help explain protein evolution
    • doi: 10.1126/science.185.4154.862; pmid: 4843792
    • R. Grantham, Amino acid difference formula to help explain protein evolution. Science 185, 862-864 (1974). doi: 10.1126/science.185.4154.862; pmid: 4843792
    • (1974) Science , vol.185 , pp. 862-864
    • Grantham, R.1
  • 62
    • 80053384429 scopus 로고    scopus 로고
    • Whole-genome sequencing of multiple Arabidopsis thaliana populations
    • doi: 10.1038/ng.911; pmid: 21874002
    • J. Cao et al., Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nat. Genet. 43, 956-963 (2011). doi: 10.1038/ng.911; pmid: 21874002
    • (2011) Nat. Genet. , vol.43 , pp. 956-963
    • Cao, J.1
  • 63
    • 84871788221 scopus 로고    scopus 로고
    • Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat
    • doi: 10.1104/ pp.112.205161; pmid: 23124323
    • E. D. Akhunov et al., Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat. Plant Physiol. 161, 252-265 (2013). doi: 10.1104/ pp.112.205161; pmid: 23124323
    • (2013) Plant Physiol. , vol.161 , pp. 252-265
    • Akhunov, E.D.1
  • 64
    • 79952744855 scopus 로고    scopus 로고
    • Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
    • doi: 10.1073/pnas.1101368108; pmid: 21368132
    • J. C. Schnable, N. M. Springer, M. Freeling, Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc. Natl. Acad. Sci. U.S.A. 108, 4069-4074 (2011). doi: 10.1073/pnas.1101368108; pmid: 21368132
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 4069-4074
    • Schnable, J.C.1    Springer, N.M.2    Freeling, M.3
  • 65
    • 66149174929 scopus 로고    scopus 로고
    • Genomic expression dominance in allopolyploids
    • doi: 10.1186/1741-7007-7-18; pmid: 19409075
    • R. A. Rapp, J. A. Udall, J. F. Wendel, Genomic expression dominance in allopolyploids. BMC Biol. 7, 18 (2009). doi: 10.1186/1741-7007-7-18; pmid: 19409075
    • (2009) BMC Biol. , vol.7 , pp. 18
    • Rapp, R.A.1    Udall, J.A.2    Wendel, J.F.3
  • 66
    • 67650888375 scopus 로고    scopus 로고
    • Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (Gossypium)
    • doi: 10.1534/genetics.109.102608; pmid: 19363125
    • B. Chaudhary et al., Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (Gossypium). Genetics 182, 503-517 (2009). doi: 10.1534/genetics.109.102608; pmid: 19363125
    • (2009) Genetics , vol.182 , pp. 503-517
    • Chaudhary, B.1
  • 67
    • 62549107556 scopus 로고    scopus 로고
    • Nonadditive expression of homoeologous genes is established upon polyploidization in hexaploid wheat
    • doi: 10.1534/genetics.108.096941; pmid: 19104075
    • M. Pumphrey, J. Bai, D. Laudencia-Chingcuanco, O. Anderson, B. S. Gill, Nonadditive expression of homoeologous genes is established upon polyploidization in hexaploid wheat. Genetics 181, 1147-1157 (2009). doi: 10.1534/genetics.108.096941; pmid: 19104075
    • (2009) Genetics , vol.181 , pp. 1147-1157
    • Pumphrey, M.1    Bai, J.2    Laudencia-Chingcuanco, D.3    Anderson, O.4    Gill, B.S.5
  • 68
    • 85048671720 scopus 로고    scopus 로고
    • Genome interplay in the grain transcriptome of hexaploid bread wheat
    • M. Pfeifer et al., Genome interplay in the grain transcriptome of hexaploid bread wheat. Science 345, 1250091 (2014).
    • (2014) Science , vol.345 , pp. 1250091
    • Pfeifer, M.1
  • 69
    • 84872611513 scopus 로고    scopus 로고
    • Homoeolog expression bias and expression level dominance in allopolyploid cotton
    • doi: 10.1038/hdy.2012.94; pmid: 23169565
    • M. J. Yoo, E. Szadkowski, J. F. Wendel, Homoeolog expression bias and expression level dominance in allopolyploid cotton. Heredity 110, 171-180 (2013). doi: 10.1038/hdy.2012.94; pmid: 23169565
    • (2013) Heredity , vol.110 , pp. 171-180
    • Yoo, M.J.1    Szadkowski, E.2    Wendel, J.F.3
  • 70
    • 0345071423 scopus 로고    scopus 로고
    • Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
    • doi: 10.1073/pnas.0630618100; pmid: 12665616
    • K. L. Adams, R. Cronn, R. Percifield, J. F. Wendel, Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc. Natl. Acad. Sci. U.S.A. 100, 4649-4654 (2003). doi: 10.1073/pnas.0630618100; pmid: 12665616
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 4649-4654
    • Adams, K.L.1    Cronn, R.2    Percifield, R.3    Wendel, J.F.4
  • 71
    • 84860424914 scopus 로고    scopus 로고
    • Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa
    • doi: 10.1371/journal.pone.0036442; pmid: 22567157
    • F. Cheng et al., Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa. PLOS ONE 7, e36442 (2012). doi: 10.1371/journal.pone.0036442; pmid: 22567157
    • (2012) PLOS ONE , vol.7
    • Cheng, F.1
  • 72
    • 4344642732 scopus 로고    scopus 로고
    • Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids
    • doi: 10.1534/genetics.104.027896; pmid: 15342533
    • J. Wang et al., Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids. Genetics 167, 1961-1973 (2004). doi: 10.1534/genetics.104.027896; pmid: 15342533
    • (2004) Genetics , vol.167 , pp. 1961-1973
    • Wang, J.1
  • 73
    • 34248328910 scopus 로고    scopus 로고
    • Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids
    • doi: 10.1146/ annurev.arplant.58.032806.103835; pmid: 17280525
    • Z. J. Chen, Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids. Annu. Rev. Plant Biol. 58, 377-406 (2007). doi: 10.1146/ annurev.arplant.58.032806.103835; pmid: 17280525
    • (2007) Annu. Rev. Plant Biol. , vol.58 , pp. 377-406
    • Chen, Z.J.1
  • 74
    • 34250674565 scopus 로고    scopus 로고
    • Evolution of duplicate gene expression in polyploid and hybrid plants
    • doi: 10.1093/jhered/esl061; pmid: 17208934
    • K. L. Adams, Evolution of duplicate gene expression in polyploid and hybrid plants. J. Hered. 98, 136-141 (2007). doi: 10.1093/jhered/esl061; pmid: 17208934
    • (2007) J. Hered. , vol.98 , pp. 136-141
    • Adams, K.L.1
  • 75
    • 45549084403 scopus 로고    scopus 로고
    • Structure-function analysis of the NB-ARC domain of plant disease resistance proteins
    • doi: 10.1093/jxb/ern045; pmid: 18390848
    • G. van Ooijen et al., Structure-function analysis of the NB-ARC domain of plant disease resistance proteins. J. Exp. Bot. 59, 1383-1397 (2008). doi: 10.1093/jxb/ern045; pmid: 18390848
    • (2008) J. Exp. Bot. , vol.59 , pp. 1383-1397
    • Van Ooijen, G.1
  • 76
    • 84867219205 scopus 로고    scopus 로고
    • Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis
    • doi: 10.1186/1471-2164-13-544; pmid: 23050870
    • A. Katiyar et al., Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis . BMC Genomics 13, 544 (2012). doi: 10.1186/1471-2164-13-544; pmid: 23050870
    • (2012) BMC Genomics , vol.13 , pp. 544
    • Katiyar, A.1
  • 77
    • 0038623564 scopus 로고    scopus 로고
    • Positional cloning of the wheat vernalization gene VRN1
    • doi: 10.1073/pnas.0937399100; pmid: 12730378
    • L. Yan et al., Positional cloning of the wheat vernalization gene VRN1. Proc. Natl. Acad. Sci. U.S.A. 100, 6263-6268 (2003). doi: 10.1073/pnas. 0937399100; pmid: 12730378
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 6263-6268
    • Yan, L.1
  • 78
    • 27744446297 scopus 로고    scopus 로고
    • The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley
    • doi: 10.1126/science.1117619; pmid: 16284181
    • A. Turner, J. Beales, S. Faure, R. P. Dunford, D. A. Laurie, The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley. Science 310, 1031-1034 (2005). doi: 10.1126/science.1117619; pmid: 16284181
    • (2005) Science , vol.310 , pp. 1031-1034
    • Turner, A.1    Beales, J.2    Faure, S.3    Dunford, R.P.4    Laurie, D.A.5
  • 79
    • 84858733836 scopus 로고    scopus 로고
    • Copy number variation affecting the Photoperiod-B1 and Vernalization-A1 genes is associated with altered flowering time in wheat (Triticum aestivum)
    • doi: 10.1371/journal.pone.0033234; pmid: 22457747
    • A. Díaz, M. Zikhali, A. S. Turner, P. Isaac, D. A. Laurie, Copy number variation affecting the Photoperiod-B1 and Vernalization-A1 genes is associated with altered flowering time in wheat (Triticum aestivum). PLOS ONE 7, e33234 (2012). doi: 10.1371/journal.pone.0033234; pmid: 22457747
    • (2012) PLOS ONE , vol.7
    • Díaz, A.1    Zikhali, M.2    Turner, A.S.3    Isaac, P.4    Laurie, D.A.5
  • 80
    • 84855219212 scopus 로고    scopus 로고
    • Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes
    • doi: 10.1186/1471-2164-13-1; pmid: 22214261
    • S. O. Oyola et al., Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes. BMC Genomics 13, 1 (2012). doi: 10.1186/1471-2164-13-1; pmid: 22214261
    • (2012) BMC Genomics , vol.13 , pp. 1
    • Oyola, S.O.1
  • 81
    • 70349675341 scopus 로고    scopus 로고
    • Chromosomal location of the cadmium uptake gene (Cdu1) in durum wheat
    • doi: 10.1139/G09-042; pmid: 19935921
    • R. E. Knox et al., Chromosomal location of the cadmium uptake gene (Cdu1) in durum wheat. Genome 52, 741-747 (2009). doi: 10.1139/G09-042; pmid: 19935921
    • (2009) Genome , vol.52 , pp. 741-747
    • Knox, R.E.1
  • 82
    • 78649632430 scopus 로고    scopus 로고
    • Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum)
    • doi: 10.1007/s00122-010-1370-1; pmid: 20559817
    • K. Wiebe et al., Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum). Theor. Appl. Genet. 121, 1047-1058 (2010). doi: 10.1007/s00122-010-1370-1; pmid: 20559817
    • (2010) Theor. Appl. Genet. , vol.121 , pp. 1047-1058
    • Wiebe, K.1
  • 83
    • 33644681986 scopus 로고    scopus 로고
    • The advantages and disadvantages of being polyploid
    • doi: 10.1038/nrg1711; pmid: 16304599
    • L. Comai, The advantages and disadvantages of being polyploid. Nat. Rev. Genet. 6, 836-846 (2005). doi: 10.1038/nrg1711; pmid: 16304599
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 836-846
    • Comai, L.1
  • 84
    • 79961167445 scopus 로고    scopus 로고
    • Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS
    • doi: 10.1111/j.1467-7652.2010.00587.x; pmid: 21356002
    • P. J. Berkman et al., Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS. Plant Biotechnol. J. 9, 768-775 (2011). doi: 10.1111/j.1467-7652.2010.00587.x; pmid: 21356002
    • (2011) Plant Biotechnol. J. , vol.9 , pp. 768-775
    • Berkman, P.J.1
  • 85
    • 84860842759 scopus 로고    scopus 로고
    • Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation
    • doi: 10.1007/s00122-011-1717-2; pmid: 22001910
    • P. J. Berkman et al., Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation. Theor. Appl. Genet. 124, 423-432 (2012). doi: 10.1007/s00122-011-1717-2; pmid: 22001910
    • (2012) Theor. Appl. Genet. , vol.124 , pp. 423-432
    • Berkman, P.J.1
  • 86
    • 84899074073 scopus 로고    scopus 로고
    • Next-generation survey sequencing and the molecular organization of wheat chromosome 6B
    • pmid: 24086083
    • T. Tanaka et al., Next-generation survey sequencing and the molecular organization of wheat chromosome 6B. DNA Res. 21, 103-114 (2013). pmid: 24086083
    • (2013) DNA Res. , vol.21 , pp. 103-114
    • Tanaka, T.1
  • 87
    • 84904727598 scopus 로고    scopus 로고
    • Characterization of polyploid wheat genomic diversity using a high-density 90, 000 single nucleotide polymorphism array
    • doi: 10.1111/pbi.12183; pmid: 24646323
    • S. Wang et al., Characterization of polyploid wheat genomic diversity using a high-density 90, 000 single nucleotide polymorphism array. Plant Biotechnol. J. (2014). doi: 10.1111/pbi.12183; pmid: 24646323
    • (2014) Plant Biotechnol. J.
    • Wang, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.