-
2
-
-
79958190542
-
Circumventing heterozygosity: Sequencing the amplified genome of a single haploid Drosophila melanogaster embryo
-
Langley CH, Crepeau M, Cardeno C, Corbett-Detig R, Stevens K (2011) Circumventing heterozygosity: sequencing the amplified genome of a single haploid Drosophila melanogaster embryo. Genetics 188: 239-246.
-
(2011)
Genetics
, vol.188
, pp. 239-246
-
-
Langley, C.H.1
Crepeau, M.2
Cardeno, C.3
Corbett-Detig, R.4
Stevens, K.5
-
3
-
-
84897965254
-
Reconstructing complex regions of genomes using long-read sequencing technology
-
Huddleston J, Ranade S, Malig M, Antonacci F, Chaisson M, et al. (2014) Reconstructing complex regions of genomes using long-read sequencing technology. Genome Research 24: 688-696.
-
(2014)
Genome Research
, vol.24
, pp. 688-696
-
-
Huddleston, J.1
Ranade, S.2
Malig, M.3
Antonacci, F.4
Chaisson, M.5
-
4
-
-
84881496498
-
The genome sequence of the colonial chordate, Botryllus schlosseri
-
Voskoboynik A, Neff NF, Sahoo D, Newman AM, Pushkarev D, et al. (2013) The genome sequence of the colonial chordate, Botryllus schlosseri. eLife 2: e00569.
-
(2013)
eLife
, vol.2
-
-
Voskoboynik, A.1
Neff, N.F.2
Sahoo, D.3
Newman, A.M.4
Pushkarev, D.5
-
5
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (2001) Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
-
6
-
-
84855281420
-
Repetitive elements may comprise over two-thirds of the human genome
-
de Koning APJ, Gu W, Castoe TA, Batzer MA, Pollock DD (2011) Repetitive elements may comprise over two-thirds of the human genome. PLoS Genetics 7: e1002384.
-
(2011)
PLoS Genetics
, vol.7
-
-
De Koning, A.P.J.1
Gu, W.2
Castoe, T.A.3
Batzer, M.A.4
Pollock, D.D.5
-
8
-
-
54949129791
-
High rate of recent transposable element-induced adaptation in Drosophila melanogaster
-
González J, Lenkov K, Lipatov M, Macpherson JM, Petrov DA (2008) High Rate of Recent Transposable Element-Induced Adaptation in Drosophila melanogaster. PLoS Biology 6: e251.
-
(2008)
PLoS Biology
, vol.6
, pp. e251
-
-
González, J.1
Lenkov, K.2
Lipatov, M.3
Macpherson, J.M.4
Petrov, D.A.5
-
9
-
-
70350248065
-
The adaptive role of transposable elements in the Drosophila genome
-
González J, Petrov DA (2009) The adaptive role of transposable elements in the Drosophila genome. Gene 448: 124-133.
-
(2009)
Gene
, vol.448
, pp. 124-133
-
-
González, J.1
Petrov, D.A.2
-
10
-
-
84875231446
-
The impact of transposable elements in environmental adaptation
-
Casacuberta E, González J (2013) The impact of transposable elements in environmental adaptation. Molecular Ecology 22: 1503-1517.
-
(2013)
Molecular Ecology
, vol.22
, pp. 1503-1517
-
-
Casacuberta, E.1
González, J.2
-
11
-
-
84867050577
-
Transposable elements: An abundant and natural source of regulatory sequences for host genes
-
Rebollo R, Romanish MT, Mager DL (2012) Transposable elements: an abundant and natural source of regulatory sequences for host genes. Annual Review of Genetics 46: 21-42.
-
(2012)
Annual Review of Genetics
, vol.46
, pp. 21-42
-
-
Rebollo, R.1
Romanish, M.T.2
Mager, D.L.3
-
12
-
-
68949203612
-
A recent adaptive transposable element insertion near highly conserved developmental loci in drosophila melanogaster
-
González J, Macpherson JM, Petrov DA (2009) A recent adaptive transposable element insertion near highly conserved developmental loci in drosophila melanogaster. Molecular Biology and Evolution 26: 1949-1961.
-
(2009)
Molecular Biology and Evolution
, vol.26
, pp. 1949-1961
-
-
González, J.1
Macpherson, J.M.2
Petrov, D.A.3
-
13
-
-
0034708758
-
A whole-genome assembly of Drosophila
-
Myers EW, Sutton GG, Delcher AL, Dew IM, Fasulo DP, et al. (2000) A whole-genome assembly of Drosophila. Science 287: 2196-2204.
-
(2000)
Science
, vol.287
, pp. 2196-2204
-
-
Myers, E.W.1
Sutton, G.G.2
Delcher, A.L.3
Dew, I.M.4
Fasulo, D.P.5
-
14
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E (2008) Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Research 18: 821-829.
-
(2008)
Genome Research
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
15
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, et al. (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
-
(2007)
Nature
, vol.450
, pp. 203-218
-
-
Clark, A.G.1
Eisen, M.B.2
Smith, D.R.3
Bergman, C.M.4
Oliver, B.5
-
16
-
-
84871958299
-
A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence
-
Hu TT, Eisen MB, Thornton KR, Andolfatto P (2013) A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence. Genome Research 23: 89-98.
-
(2013)
Genome Research
, vol.23
, pp. 89-98
-
-
Hu, T.T.1
Eisen, M.B.2
Thornton, K.R.3
Andolfatto, P.4
-
17
-
-
78650909427
-
Limitations of next-generation genome sequence assembly
-
Alkan C, Sajjadian S, Eichler EE (2010) Limitations of next-generation genome sequence assembly. Nature Methods 8: 61-65.
-
(2010)
Nature Methods
, vol.8
, pp. 61-65
-
-
Alkan, C.1
Sajjadian, S.2
Eichler, E.E.3
-
18
-
-
79953192561
-
A vertebrate case study of the quality of assemblies derived from next-generation sequences
-
Ye L, Hillier LW, Minx P, Thane N, Locke DP, et al. (2011) A vertebrate case study of the quality of assemblies derived from next-generation sequences. Genome Biology 12: R31.
-
(2011)
Genome Biology
, vol.12
, pp. R31
-
-
Ye, L.1
Hillier, L.W.2
Minx, P.3
Thane, N.4
Locke, D.P.5
-
19
-
-
77952886150
-
Assembly algorithms for next-generation sequencing data
-
Miller JR, Koren S, Sutton G (2010) Assembly algorithms for next-generation sequencing data. Genomics 95: 315-327.
-
(2010)
Genomics
, vol.95
, pp. 315-327
-
-
Miller, J.R.1
Koren, S.2
Sutton, G.3
-
20
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
Li R, Zhu H, Ruan J, Qian W, Fang X, et al. (2010) De novo assembly of human genomes with massively parallel short read sequencing. Genome Research 20: 265-272.
-
(2010)
Genome Research
, vol.20
, pp. 265-272
-
-
Li, R.1
Zhu, H.2
Ruan, J.3
Qian, W.4
Fang, X.5
-
21
-
-
64449088698
-
Continuous base identification for single-molecule nanopore DNA sequencing
-
Clarke J, Wu HC, Jayasinghe L, Patel A, Reid S, et al. (2009) Continuous base identification for single-molecule nanopore DNA sequencing. Nature Nanotechnology 4: 265-270.
-
(2009)
Nature Nanotechnology
, vol.4
, pp. 265-270
-
-
Clarke, J.1
Wu, H.C.2
Jayasinghe, L.3
Patel, A.4
Reid, S.5
-
22
-
-
84894273022
-
A benchmark study on error assessment and quality control of CCS reads derived from the PacBio RS
-
Jiao X, Zheng X, Ma L, Kutty G, Gogineni E, et al. (2013) A benchmark study on error assessment and quality control of CCS reads derived from the PacBio RS. Journal of Data Mining in Genomics & Proteomics 4.
-
(2013)
Journal of Data Mining in Genomics & Proteomics
, vol.4
-
-
Jiao, X.1
Zheng, X.2
Ma, L.3
Kutty, G.4
Gogineni, E.5
-
23
-
-
84863651532
-
Hybrid error correction and de novo assembly of single-molecule sequencing reads
-
Koren S, Schatz MC, Walenz BP, Martin J, Howard JT, et al. (2012) Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature Biotechnology 30: 693-700.
-
(2012)
Nature Biotechnology
, vol.30
, pp. 693-700
-
-
Koren, S.1
Schatz, M.C.2
Walenz, B.P.3
Martin, J.4
Howard, J.T.5
-
24
-
-
80051688000
-
Field guide to next-generation DNA sequencers
-
Glenn TC (2011) Field guide to next-generation DNA sequencers. Molecular Ecology Resources 11: 759-769.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 759-769
-
-
Glenn, T.C.1
-
25
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, et al. (2000) The genome sequence of Drosophila melanogaster. Science 287: 2185-2195.
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
-
26
-
-
33845966435
-
BAC clones generated from sheared DNA
-
Osoegawa K, Vessere GM, Li Shu C, Hoskins RA, Abad JP, et al. (2007) BAC clones generated from sheared DNA. Genomics 89: 291-299.
-
(2007)
Genomics
, vol.89
, pp. 291-299
-
-
Osoegawa, K.1
Vessere, G.M.2
Li Shu, C.3
Hoskins, R.A.4
Abad, J.P.5
-
27
-
-
0012340085
-
Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence
-
RESEARCH0079
-
Celniker SE, Wheeler DA, Kronmiller B, Carlson JW, Halpern A, et al. (2002) Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biology 3: RESEARCH0079.
-
(2002)
Genome Biology
, vol.3
-
-
Celniker, S.E.1
Wheeler, D.A.2
Kronmiller, B.3
Carlson, J.W.4
Halpern, A.5
-
28
-
-
34250873404
-
Sequence finishing and mapping of Drosophila melanogaster heterochromatin
-
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, et al. (2007) Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Science 316: 1625-1628.
-
(2007)
Science
, vol.316
, pp. 1625-1628
-
-
Hoskins, R.A.1
Carlson, J.W.2
Kennedy, C.3
Acevedo, D.4
Evans-Holm, M.5
-
29
-
-
34948898172
-
A model of segmental duplication formation in Drosophila melanogaster
-
Fiston-Lavier AS, Anxolabehere D, Quesneville H (2007) A model of segmental duplication formation in Drosophila melanogaster. Genome Research 17: 1458-1470.
-
(2007)
Genome Research
, vol.17
, pp. 1458-1470
-
-
Fiston-Lavier, A.S.1
Anxolabehere, D.2
Quesneville, H.3
-
30
-
-
0346120025
-
Detection of new transposable element families in Drosophila melanogaster and Anopheles gambiae genomes
-
Quesneville H, Nouaud D, Anxolabhre D (2003) Detection of new transposable element families in Drosophila melanogaster and Anopheles gambiae genomes. Journal of Molecular Evolution 57: S50-S59.
-
(2003)
Journal of Molecular Evolution
, vol.57
, pp. S50-S59
-
-
Quesneville, H.1
Nouaud, D.2
Anxolabhre, D.3
-
31
-
-
28844444029
-
Combined evidence annotation of transposable elements in genome sequences
-
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, et al. (2005) Combined evidence annotation of transposable elements in genome sequences. PLoS Computational Biology 1: e22.
-
(2005)
PLoS Computational Biology
, vol.1
, pp. e22
-
-
Quesneville, H.1
Bergman, C.M.2
Andrieu, O.3
Autard, D.4
Nouaud, D.5
-
32
-
-
84907074208
-
-
Accessed 2014 Aug. 12
-
FlyBase D. melanogaster Genome Release 5.56 FTP Site. Available: ftp://ftp.flybase.net/genomes/Drosophila-melanogaster/dmel-r5.56-FB2014-02/fasta/dmel-all-chromosome-r5.56.fasta.gz. Accessed 2014 Aug. 12.
-
D. Melanogaster Genome Release 5.56 FTP Site
-
-
FlyBase1
-
33
-
-
84907079919
-
-
Accessed 2014 Aug. 12
-
Bergman CM (2013) Bergman Lab Blog. Available: http://bergmanlab.smith.man.ac.uk/?p=2033. Accessed 2014 Aug. 12.
-
(2013)
Bergman Lab Blog
-
-
Bergman, C.M.1
-
34
-
-
34249014906
-
A distinct type of heterochromatin within Drosophila melanogaster chromosome 4
-
Haynes KA, Gracheva E, Elgin SCR (2006) A distinct type of heterochromatin within Drosophila melanogaster chromosome 4. Genetics 175: 1539-1542.
-
(2006)
Genetics
, vol.175
, pp. 1539-1542
-
-
Haynes, K.A.1
Gracheva, E.2
Elgin, S.C.R.3
-
35
-
-
35648976118
-
The diploid genome sequence of an individual human
-
Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, et al. (2007) The diploid genome sequence of an individual human. PLoS Biology 5: e254.
-
(2007)
PLoS Biology
, vol.5
, pp. e254
-
-
Levy, S.1
Sutton, G.2
Ng, P.C.3
Feuk, L.4
Halpern, A.L.5
-
37
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, et al. (2004) Versatile and open software for comparing large genomes. Genome Biology 5: R12.
-
(2004)
Genome Biology
, vol.5
, pp. R12
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
-
38
-
-
33947398002
-
Minimus: A fast, lightweight genome assembler
-
Sommer DD, Delcher AL, Salzberg SL, Pop M (2007) Minimus: a fast, lightweight genome assembler. BMC Bioinformatics 8: 64.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 64
-
-
Sommer, D.D.1
Delcher, A.L.2
Salzberg, S.L.3
Pop, M.4
-
40
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25: 3389-3402.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
41
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
42
-
-
84861548193
-
Summarizing and correcting the GC content bias in high-throughput sequencing
-
Benjamini Y, Speed TP (2012) Summarizing and correcting the GC content bias in high-throughput sequencing. Nucleic Acids Research 40: e72.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. e72
-
-
Benjamini, Y.1
Speed, T.P.2
-
43
-
-
0035035673
-
The elevated GC content at exonic third sites is not evidence against neutralist models of isochore evolution
-
Duret L, Hurst LD (2001) The elevated GC content at exonic third sites is not evidence against neutralist models of isochore evolution. Molecular Biology and Evolution 18: 757-762.
-
(2001)
Molecular Biology and Evolution
, vol.18
, pp. 757-762
-
-
Duret, L.1
Hurst, L.D.2
-
45
-
-
84907068314
-
-
Accessed 2014 Aug. 12
-
Fiston-Lavier A, Barrientos M, Ramia M, Barron M, Tushar D, et al. FlyTE: Transposable element discovery, annotation and population frequency in flies. Available: http://petrov.stanford.edu/cgi-bin/Tlex-databases/flyTE-home.cgi. Accessed 2014 Aug. 12.
-
FlyTE: Transposable Element Discovery, Annotation and Population Frequency in Flies
-
-
Fiston-Lavier, A.1
Barrientos, M.2
Ramia, M.3
Barron, M.4
Tushar, D.5
-
46
-
-
0000383912
-
Pseudoreplication and the design of ecological field experiments
-
Hurlbert SH (1984) Pseudoreplication and the design of ecological field experiments. Ecological Monographs 54: 187-211.
-
(1984)
Ecological Monographs
, vol.54
, pp. 187-211
-
-
Hurlbert, S.H.1
-
47
-
-
0035105221
-
Perspective: Transposable elements, parasitic DNA, and genome evolution
-
Kidwell MG, Lisch DR (2001) Perspective: transposable elements, parasitic DNA, and genome evolution. Evolution 55: 1-24.
-
(2001)
Evolution
, vol.55
, pp. 1-24
-
-
Kidwell, M.G.1
Lisch, D.R.2
-
48
-
-
70349318211
-
The impact of retrotransposons on human genome evolution
-
Cordaux R, Batzer MA (2009) The impact of retrotransposons on human genome evolution. Nature Reviews Genetics 10: 691-703.
-
(2009)
Nature Reviews Genetics
, vol.10
, pp. 691-703
-
-
Cordaux, R.1
Batzer, M.A.2
-
49
-
-
0035500898
-
Transposable elements are found in a large number of human protein-coding genes
-
Nekrutenko A, Li WH (2001) Transposable elements are found in a large number of human protein-coding genes. Trends in Genetics: TIG 17: 619-621.
-
(2001)
Trends in Genetics: TIG
, vol.17
, pp. 619-621
-
-
Nekrutenko, A.1
Li, W.H.2
-
50
-
-
79953710031
-
T-lex: A program for fast and accurate assessment of transposable element presence using next-generation sequencing data
-
Fiston-Lavier AS, Carrigan M, Petrov DA, González J (2011) T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data. Nucleic Acids Research 39: e36.
-
(2011)
Nucleic Acids Research
, vol.39
, pp. e36
-
-
Fiston-Lavier, A.S.1
Carrigan, M.2
Petrov, D.A.3
González, J.4
-
51
-
-
84873311500
-
RetroSeq: Transposable element discovery from next-generation sequencing data
-
Keane TM, Wong K, Adams DJ (2013) RetroSeq: transposable element discovery from next-generation sequencing data. Bioinformatics 29: 389-390.
-
(2013)
Bioinformatics
, vol.29
, pp. 389-390
-
-
Keane, T.M.1
Wong, K.2
Adams, D.J.3
-
52
-
-
84865285978
-
Landscape of somatic retrotransposition in human cancers
-
Lee E, Iskow R, Yang L, Gokcumen O, Haseley P, et al. (2012) Landscape of somatic retrotransposition in human cancers. Science 337: 967-971.
-
(2012)
Science
, vol.337
, pp. 967-971
-
-
Lee, E.1
Iskow, R.2
Yang, L.3
Gokcumen, O.4
Haseley, P.5
-
53
-
-
84856800851
-
Whole genome resequencing reveals natural target site preferences of transposable elements in Drosophila melanogaster
-
Linheiro RS, Bergman CM (2012) Whole genome resequencing reveals natural target site preferences of transposable elements in Drosophila melanogaster. PLoS ONE 7: e30008.
-
(2012)
PLoS ONE
, vol.7
-
-
Linheiro, R.S.1
Bergman, C.M.2
-
54
-
-
84883237525
-
The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice
-
Robb SMC, Lu L, Valencia E, Burnette JM, Okumoto Y, et al. (2013) The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice. G3 (Bethesda, Md) 3: 949-957.
-
(2013)
G3 (Bethesda, Md)
, vol.3
, pp. 949-957
-
-
Robb, S.M.C.1
Lu, L.2
Valencia, E.3
Burnette, J.M.4
Okumoto, Y.5
-
55
-
-
84857498958
-
Sequencing of pooled DNA samples (Pool-Seq) uncovers complex dynamics of transposable element insertions in Drosophila melanogaster
-
Kofler R, Betancourt AJ, Schlötterer C (2012) Sequencing of pooled DNA samples (Pool-Seq) uncovers complex dynamics of transposable element insertions in Drosophila melanogaster. PLoS Genetics 8: e1002487.
-
(2012)
PLoS Genetics
, vol.8
-
-
Kofler, R.1
Betancourt, A.J.2
Schlötterer, C.3
-
56
-
-
84892675055
-
TE-Locate: A tool to locate and group transposable element occurrences using paired-end next-generation sequencing data
-
Platzer A, Nizhynska V, Long Q (2012) TE-Locate: a tool to locate and group transposable element occurrences using paired-end next-generation sequencing data. Biology 1: 395-410.
-
(2012)
Biology
, vol.1
, pp. 395-410
-
-
Platzer, A.1
Nizhynska, V.2
Long, Q.3
-
57
-
-
84857893016
-
GAGE: A critical evaluation of genome assemblies and assembly algorithms
-
Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, et al. (2012) GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome Research 22: 557-567.
-
(2012)
Genome Research
, vol.22
, pp. 557-567
-
-
Salzberg, S.L.1
Phillippy, A.M.2
Zimin, A.3
Puiu, D.4
Magoc, T.5
-
58
-
-
84991528460
-
Assemblathon 2: Evaluating de novo methods of genome assembly in three vertebrate species
-
Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, et al. (2013) Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. GigaScience 2: 10.
-
(2013)
GigaScience
, vol.2
, pp. 10
-
-
Bradnam, K.R.1
Fass, J.N.2
Alexandrov, A.3
Baranay, P.4
Bechner, M.5
-
59
-
-
84904259668
-
Comparative validation of the D. melanogaster modENCODE transcriptome annotation
-
Chen ZX, Sturgill D, Qu J, Jiang H, Park S, et al. (2014) Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Research 24: 1209-1223.
-
(2014)
Genome Research
, vol.24
, pp. 1209-1223
-
-
Chen, Z.X.1
Sturgill, D.2
Qu, J.3
Jiang, H.4
Park, S.5
-
60
-
-
84898654757
-
Whole-genome haplotyping using long reads and statistical methods
-
Kuleshov V, Xie D, Chen R, Pushkarev D, Ma Z, et al. (2014) Whole-genome haplotyping using long reads and statistical methods. Nature biotechnology 32: 261-266.
-
(2014)
Nature Biotechnology
, vol.32
, pp. 261-266
-
-
Kuleshov, V.1
Xie, D.2
Chen, R.3
Pushkarev, D.4
Ma, Z.5
-
63
-
-
84940119775
-
-
Accessed 2014 Aug. 12
-
Landolin J, Chin J, Kim K, Yu C, Fisher W, et al. (2014) Initial de novo assemblies of the D. melanogaster genome using long-read PacBio sequencing. Available: http://dx.doi.org/10.6084/m9.figshare.976097. Accessed 2014 Aug. 12.
-
(2014)
Initial de Novo Assemblies of the D. Melanogaster Genome Using Long-read PacBio Sequencing
-
-
Landolin, J.1
Chin, J.2
Kim, K.3
Yu, C.4
Fisher, W.5
-
65
-
-
84857838310
-
Efficient de novo assembly of large genomes using compressed data structures
-
Simpson JT, Durbin R (2012) Efficient de novo assembly of large genomes using compressed data structures. Genome Research 22: 549-556.
-
(2012)
Genome Research
, vol.22
, pp. 549-556
-
-
Simpson, J.T.1
Durbin, R.2
-
66
-
-
84863012360
-
The Drosophila melanogaster genetic reference panel
-
Mackay TFC, Richards S, Stone EA, Barbadilla A, Ayroles JF, et al. (2012) The Drosophila melanogaster Genetic Reference Panel. Nature 482: 173-178.
-
(2012)
Nature
, vol.482
, pp. 173-178
-
-
Mackay, T.F.C.1
Richards, S.2
Stone, E.A.3
Barbadilla, A.4
Ayroles, J.F.5
-
68
-
-
84883664726
-
Reducing assembly complexity of microbial genomes with single-molecule sequencing
-
Koren S, Harhay GP, Smith TP, Bono JL, Harhay DM, et al. (2013) Reducing assembly complexity of microbial genomes with single-molecule sequencing. Genome Biology 14: R101.
-
(2013)
Genome Biology
, vol.14
, pp. R101
-
-
Koren, S.1
Harhay, G.P.2
Smith, T.P.3
Bono, J.L.4
Harhay, D.M.5
-
70
-
-
84863304598
-
-
R Foundation for Statistical Computing, Vienna, Austria. Accessed 2014 Aug. 12
-
R Core Team (2013) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. Available: http://www.R-project.org/. Accessed 2014 Aug. 12.
-
(2013)
R: A Language and Environment for Statistical Computing
-
-
R Core Team1
|