-
1
-
-
84926472171
-
Improved data analysis for the MinION nanopore sequencer
-
Jain, M. et al. Improved data analysis for the MinION nanopore sequencer. Nat. Methods 12, 351-356 (2015).
-
(2015)
Nat. Methods
, vol.12
, pp. 351-356
-
-
Jain, M.1
-
2
-
-
78650280872
-
Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase
-
Lieberman, K.R. et al. Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase. J. Am. Chem. Soc. 132, 17961-17972 (2010).
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 17961-17972
-
-
Lieberman, K.R.1
-
3
-
-
84905723571
-
Decoding long nanopore sequencing reads of natural DNA
-
Laszlo, A.H. et al. Decoding long nanopore sequencing reads of natural DNA. Nat. Biotechnol. 32, 829-833 (2014).
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 829-833
-
-
Laszlo, A.H.1
-
4
-
-
84924426384
-
Poretools: A toolkit for analyzing nanopore sequence data
-
Loman, N.J. and Quinlan, A.R. Poretools: a toolkit for analyzing nanopore sequence data. Bioinformatics 30, 3399-3401 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 3399-3401
-
-
Loman, N.J.1
Quinlan, A.R.2
-
5
-
-
84942520038
-
A reference bacterial genome dataset generated on the MinION(TM) portable single-molecule nanopore sequencer
-
Quick, J., Quinlan, A.R. and Loman, N.J. A reference bacterial genome dataset generated on the MinION(TM) portable single-molecule nanopore sequencer. Gigascience 3, 22 (2014).
-
(2014)
Gigascience
, vol.3
, pp. 22
-
-
Quick, J.1
Quinlan, A.R.2
Loman, N.J.3
-
6
-
-
84924388692
-
MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
-
Ashton, P.M. et al. MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island. Nat. Biotechnol. 33, 296-300 (2014).
-
(2014)
Nat. Biotechnol.
, vol.33
, pp. 296-300
-
-
Ashton, P.M.1
-
7
-
-
84920506933
-
Nanopore sequencing: From imagination to reality
-
Bayley, H. Nanopore sequencing: from imagination to reality. Clin. Chem. 61, 25-31 (2014).
-
(2014)
Clin. Chem.
, vol.61
, pp. 25-31
-
-
Bayley, H.1
-
8
-
-
84863651532
-
Hybrid error correction and de novo assembly of single-molecule sequencing reads
-
Koren, S. et al. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat. Biotechnol. 30, 693-700 (2012).
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 693-700
-
-
Koren, S.1
-
9
-
-
84880798154
-
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
-
Chin, C.-S. et al. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat. Methods 10, 563-569 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 563-569
-
-
Chin, C.-S.1
-
10
-
-
84859629295
-
Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase
-
Manrao, E.A. et al. Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase. Nat. Biotechnol. 30, 349-353 (2012).
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 349-353
-
-
Manrao, E.A.1
-
11
-
-
80053530116
-
Nucleotide discrimination with DNA immobilized in the MspA nanopore
-
Manrao, E.A., Derrington, I.M., Pavlenok, M., Niederweis, M. and Gundlach, J.H. Nucleotide discrimination with DNA immobilized in the MspA nanopore. PLoS ONE 6, e25723 (2011).
-
(2011)
PLoS ONE
, vol.6
, pp. e25723
-
-
Manrao, E.A.1
Derrington, I.M.2
Pavlenok, M.3
Niederweis, M.4
Gundlach, J.H.5
-
12
-
-
84859175970
-
Automated forward and reverse ratcheting of DNA in a nanopore at 5-A precision
-
Cherf, G.M. et al. Automated forward and reverse ratcheting of DNA in a nanopore at 5-A precision. Nat. Biotechnol. 30, 344-348 (2012).
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 344-348
-
-
Cherf, G.M.1
-
14
-
-
84935113569
-
Error bounds for convolutional codes and an asymptotically optimum decoding algorithm
-
Viterbi, A.J. Error bounds for convolutional codes and an asymptotically optimum decoding algorithm. IEEE Trans. Inf. Theory 13, 260-269 (1967).
-
(1967)
IEEE Trans. Inf. Theory
, vol.13
, pp. 260-269
-
-
Viterbi, A.J.1
-
15
-
-
84861149539
-
DNA base-calling from a nanopore using a Viterbi algorithm
-
Timp, W., Comer, J. and Aksimentiev, A. DNA base-calling from a nanopore using a Viterbi algorithm. Biophys. J. 102, L37-L39 (2012).
-
(2012)
Biophys. J.
, vol.102
, pp. L37-L39
-
-
Timp, W.1
Comer, J.2
Aksimentiev, A.3
-
16
-
-
0344005042
-
Speech discrimination by dynamic programming
-
Vintsyuk, T.K. Speech discrimination by dynamic programming. Cybernetics 4, 52-57 (1972).
-
(1972)
Cybernetics
, vol.4
, pp. 52-57
-
-
Vintsyuk, T.K.1
-
17
-
-
0030582739
-
Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments
-
Gotoh, O. Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments. J. Mol. Biol. 264, 823-838 (1996).
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 823-838
-
-
Gotoh, O.1
-
19
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T.F. and Waterman, M.S. Identification of common molecular subsequences. J. Mol. Biol. 147, 195-197 (1981).
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
20
-
-
0035865322
-
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
-
Sachidanandam, R. et al. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409, 928-933 (2001).
-
(2001)
Nature
, vol.409
, pp. 928-933
-
-
Sachidanandam, R.1
-
21
-
-
84888101866
-
Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands
-
Schreiber, J. et al. Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands. Proc. Natl. Acad. Sci. USA 110, 18910-18915 (2013).
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 18910-18915
-
-
Schreiber, J.1
-
22
-
-
84914170339
-
Nanopores discriminate among five C5-cytosine variants in DNA
-
Wescoe, Z.L., Schreiber, J. and Akeson, M. Nanopores discriminate among five C5-cytosine variants in DNA. J. Am. Chem. Soc. 136, 16582-16587 (2014).
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 16582-16587
-
-
Wescoe, Z.L.1
Schreiber, J.2
Akeson, M.3
-
23
-
-
84924800542
-
Probing DNA helicase kinetics with temperature-controlled magnetic tweezers
-
Gollnick, B. et al. Probing DNA helicase kinetics with temperature-controlled magnetic tweezers. Small 11, 1273-1284 (2015).
-
(2015)
Small
, vol.11
, pp. 1273-1284
-
-
Gollnick, B.1
-
24
-
-
0034930381
-
Sequence-specific detection of individual DNA strands using engineered nanopores
-
Howorka, S., Cheley, S. and Bayley, H. Sequence-specific detection of individual DNA strands using engineered nanopores. Nat. Biotechnol. 19, 636-639 (2001).
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 636-639
-
-
Howorka, S.1
Cheley, S.2
Bayley, H.3
-
25
-
-
58549116498
-
Single-molecule DNA detection with an engineered MspA protein nanopore
-
Butler, T.Z., Pavlenok, M., Derrington, I.M., Niederweis, M. and Gundlach, J.H. Single-molecule DNA detection with an engineered MspA protein nanopore. Proc. Natl. Acad. Sci. USA 105, 20647-20652 (2008).
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 20647-20652
-
-
Butler, T.Z.1
Pavlenok, M.2
Derrington, I.M.3
Niederweis, M.4
Gundlach, J.H.5
-
26
-
-
58149402384
-
Enhanced translocation of single DNA molecules through alpha-hemolysin nanopores by manipulation of internal charge
-
Maglia, G., Restrepo, M.R., Mikhailova, E. and Bayley, H. Enhanced translocation of single DNA molecules through alpha-hemolysin nanopores by manipulation of internal charge. Proc. Natl. Acad. Sci. USA 105, 19720-19725 (2008).
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 19720-19725
-
-
Maglia, G.1
Restrepo, M.R.2
Mikhailova, E.3
Bayley, H.4
-
27
-
-
84938421951
-
A complete bacterial genome assembled de novo using only nanopore sequencing data
-
Loman, N.J., Quick, J. and Simpson, J.T. A complete bacterial genome assembled de novo using only nanopore sequencing data. Nat. Methods 12, 733-735 (2015).
-
(2015)
Nat. Methods
, vol.12
, pp. 733-735
-
-
Loman, N.J.1
Quick, J.2
Simpson, J.T.3
-
28
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz, S. et al. Versatile and open software for comparing large genomes. Genome Biol. 5, R12 (2004).
-
(2004)
Genome Biol.
, vol.5
, pp. R12
-
-
Kurtz, S.1
|