-
1
-
-
84931292033
-
Long read nanopore sequencing for detection of HLA and CYP2D6 variants and haplotypes
-
Ammar R Paton TA Torti D: Long read nanopore sequencing for detection of HLA and CYP2D6 variants and haplotypes. F1000Res. 2015;4:17. 10.12688/f1000research.6037.2
-
(2015)
F1000Res
, vol.4
, pp. 17
-
-
Ammar, R.1
Paton, T.A.2
Torti, D.3
-
2
-
-
0032762996
-
Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules
-
10585944, 1300593
-
Akeson M Branton D Kasianowicz JJ: Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules. Biophys J. 1999;77(6):3227-3233. 10585944 10.1016/S0006-3495(99)77153-5 1300593
-
(1999)
Biophys J
, vol.77
, Issue.6
, pp. 3227-3233
-
-
Akeson, M.1
Branton, D.2
Kasianowicz, J.J.3
-
3
-
-
84924388692
-
MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
-
25485618
-
Ashton PM Nair S Dallman T: MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island. Nat Biotechnol. 2015;33(3):296-300. 25485618 10.1038/nbt.3103
-
(2015)
Nat Biotechnol
, vol.33
, Issue.3
, pp. 296-300
-
-
Ashton, P.M.1
Nair, S.2
Dallman, T.3
-
4
-
-
33751414735
-
Sequencing single molecules of DNA
-
17113816
-
Bayley H: Sequencing single molecules of DNA. Curr Opin Chem Biol. 2006;10(6):628-637. 17113816 10.1016/j.cbpa.2006.10.040
-
(2006)
Curr Opin Chem Biol
, vol.10
, Issue.6
, pp. 628-637
-
-
Bayley, H.1
-
5
-
-
84863434188
-
Nanopore genome sequencer makes its debut
-
Check Hayden E: Nanopore genome sequencer makes its debut. Nat News. 2012. 10.1038/nature.2012.10051
-
(2012)
Nat News
-
-
Check Hayden, E.1
-
6
-
-
84859175970
-
Automated Forward and Reverse Ratcheting of DNA in a Nanopore at 5-Å Precision
-
22334048, 3408072
-
Cherf GM Lieberman KR Rashid H: Automated Forward and Reverse Ratcheting of DNA in a Nanopore at 5-Å Precision. Nat Biotechnol. 2012;30(4):344-348. 22334048 10.1038/nbt.2147 3408072
-
(2012)
Nat Biotechnol
, vol.30
, Issue.4
, pp. 344-348
-
-
Cherf, G.M.1
Lieberman, K.R.2
Rashid, H.3
-
7
-
-
0007826742
-
Characterization of individual polymer molecules based on monomer-interface interactions
-
Reference Source
-
Church GM Deamer DW Branton D: Characterization of individual polymer molecules based on monomer-interface interactions. US patent 5,795,782 (filed March 1995),1998. Reference Source
-
(1998)
-
-
Church, G.M.1
Deamer, D.W.2
Branton, D.3
-
8
-
-
77958014348
-
Nanopore DNA sequencing with MspA
-
20798343, 2941267
-
Derrington IM Butler TZ Collins MD: Nanopore DNA sequencing with MspA. Proc Natl Acad Sci USA. 2010;107(37):16060-16065. 20798343 10.1073/pnas.1001831107 2941267
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.37
, pp. 16060-16065
-
-
Derrington, I.M.1
Butler, T.Z.2
Collins, M.D.3
-
9
-
-
84859643160
-
Oxford Nanopore announcement sets sequencing sector abuzz
-
22491260
-
Eisenstein M: Oxford Nanopore announcement sets sequencing sector abuzz. Nat Biotechnol. 2012;30(4):295-296. 22491260 10.1038/nbt0412-295
-
(2012)
Nat Biotechnol
, vol.30
, Issue.4
, pp. 295-296
-
-
Eisenstein, M.1
-
10
-
-
84925353483
-
Oxford Nanopore sequencing, Hybrid Error Correction, and de novo assembly of a eukaryotic genome
-
Goodwin S Gurtowski J Ethe-Sayers S: Oxford Nanopore sequencing, Hybrid Error Correction, and de novo assembly of a eukaryotic genome. bioRxiv. 2015. 10.1101/013490
-
(2015)
bioRxiv
-
-
Goodwin, S.1
Gurtowski, J.2
Ethe-Sayers, S.3
-
11
-
-
84942518081
-
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
-
26416663, 4587849
-
Greninger AL Naccache SN Federman S: Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis. Genome Med. 2015;7(1):99. 26416663 10.1186/s13073-015-0220-9 4587849
-
(2015)
Genome Med
, vol.7
, Issue.1
, pp. 99
-
-
Greninger, A.L.1
Naccache, S.N.2
Federman, S.3
-
12
-
-
84926472171
-
Improved data analysis for the MinION nanopore sequencer
-
25686389
-
Jain M Fiddes IT Miga KH: Improved data analysis for the MinION nanopore sequencer. Nat Methods. 2015;12(4):351-356. 25686389 10.1038/nmeth.3290
-
(2015)
Nat Methods
, vol.12
, Issue.4
, pp. 351-356
-
-
Jain, M.1
Fiddes, I.T.2
Miga, K.H.3
-
13
-
-
84936764311
-
Scaffolding of a bacterial genome using MinION nanopore sequencing
-
26149338, 4493687
-
Karlsson E Lärkeryd A Sjödin A: Scaffolding of a bacterial genome using MinION nanopore sequencing. Sci Rep. 2015;5: 11996. 26149338 10.1038/srep11996 4493687
-
(2015)
Sci Rep
, vol.5
-
-
Karlsson, E.1
Lärkeryd, A.2
Sjödin, A.3
-
14
-
-
0030465241
-
Characterization of individual polynucleotide molecules using a membrane channel
-
8943010, 19421
-
Kasianowicz JJ Brandin E Branton D: Characterization of individual polynucleotide molecules using a membrane channel. Proc Natl Acad Sci U S A. 1996;93(24):13770-13773. 8943010 10.1073/pnas.93.24.13770 19421
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, Issue.24
, pp. 13770-13773
-
-
Kasianowicz, J.J.1
Brandin, E.2
Branton, D.3
-
15
-
-
79952256999
-
Adaptive seeds tame genomic sequence comparison
-
21209072, 3044862
-
Kielbasa SM Wan R Sato K: Adaptive seeds tame genomic sequence comparison. Genome Res. 2011;21(3):487-493. 21209072 10.1101/gr.113985.110 3044862
-
(2011)
Genome Res
, vol.21
, Issue.3
, pp. 487-493
-
-
Kielbasa, S.M.1
Wan, R.2
Sato, K.3
-
16
-
-
84938850442
-
Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer
-
25815165, 4374364
-
Kilianski A Haas JL Corriveau EJ: Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer. Gigascience. 2015;4:12. 25815165 10.1186/s13742-015-0051-z 4374364
-
(2015)
Gigascience
, vol.4
, pp. 12
-
-
Kilianski, A.1
Haas, J.L.2
Corriveau, E.J.3
-
17
-
-
84959087968
-
Denoising DNA deep sequencing data-high-throughput sequencing errors and their correction
-
26026159
-
Laehnemann D Borkhardt A McHardy AC: Denoising DNA deep sequencing data-high-throughput sequencing errors and their correction. Brief Bioinform. 2015;1-26. 26026159 10.1093/bib/bbv029
-
(2015)
Brief Bioinform
, pp. 1-26
-
-
Laehnemann, D.1
Borkhardt, A.2
McHardy, A.C.3
-
18
-
-
84925352769
-
Assessing the performance of the Oxford Nanopore Technologies MinION
-
Laver T Harrison J O'Neill PA: Assessing the performance of the Oxford Nanopore Technologies MinION. Biomol Detect Quantif. 2015;3:1-8. 10.1016/j.bdq.2015.02.001
-
(2015)
Biomol Detect Quantif
, vol.3
, pp. 1-8
-
-
Laver, T.1
Harrison, J.2
O'Neill, P.A.3
-
19
-
-
84959879117
-
NanoOK: Multi-reference alignment analysis of nanopore sequencing data, quality and error profiles
-
26382197, ; pii: btv540.
-
Leggett RM Heavens D Caccamo M: NanoOK: Multi-reference alignment analysis of nanopore sequencing data, quality and error profiles. Bioinformatics. 2015; pii: btv540. 26382197 10.1093/bioinformatics/btv540
-
(2015)
Bioinformatics
-
-
Leggett, R.M.1
Heavens, D.2
Caccamo, M.3
-
20
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
19505943, 2723002
-
Li H Handsaker B Wysoker A: The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009;25(16):2078-9. 19505943 10.1093/bioinformatics/btp352 2723002
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
-
21
-
-
84925373900
-
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
-
Reference Source
-
Li H: Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv: 1303.3997. 2013. Reference Source
-
(2013)
arXiv: 1303.3997
-
-
Li, H.1
-
22
-
-
78650280872
-
Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase
-
21121604, 3076064
-
Lieberman KR Cherf GM Doody MJ: Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase. J Am Chem Soc. 2010;132(50):17961-72. 21121604 10.1021/ja1087612 3076064
-
(2010)
J Am Chem Soc
, vol.132
, Issue.50
, pp. 17961-17972
-
-
Lieberman, K.R.1
Cherf, G.M.2
Doody, M.J.3
-
23
-
-
84924426384
-
Poretools: a toolkit for analyzing nanopore sequence data
-
25143291, 4296151
-
Loman NJ Quinlan AR: Poretools: a toolkit for analyzing nanopore sequence data. Bioinformatics. 2014;30(23):3399-3401. 25143291 10.1093/bioinformatics/btu555 4296151
-
(2014)
Bioinformatics
, vol.30
, Issue.23
, pp. 3399-3401
-
-
Loman, N.J.1
Quinlan, A.R.2
-
24
-
-
84938421951
-
A complete bacterial genome assembled de novo using only nanopore sequencing data
-
26076426
-
Loman NJ Quick J Simpson JT: A complete bacterial genome assembled de novo using only nanopore sequencing data. Nat Methods. 2015;12(8):733-735. 26076426 10.1038/nmeth.3444
-
(2015)
Nat Methods
, vol.12
, Issue.8
, pp. 733-735
-
-
Loman, N.J.1
Quick, J.2
Simpson, J.T.3
-
25
-
-
80053530116
-
Nucleotide discrimination with DNA immobilized in the MspA nanopore
-
21991340, 3186796
-
Manrao EA Derrington IM Pavlenok M: Nucleotide discrimination with DNA immobilized in the MspA nanopore. PLoS One. 2011;6(10):e25723. 21991340 10.1371/journal.pone.0025723 3186796
-
(2011)
PLoS One
, vol.6
, Issue.10
, pp. e25723
-
-
Manrao, E.A.1
Derrington, I.M.2
Pavlenok, M.3
-
26
-
-
84905723571
-
Decoding long nanopore sequencing reads of natural DNA
-
24964173, 4126851
-
Laszlo AH Derrington IM Ross BC: Decoding long nanopore sequencing reads of natural DNA. Nat Biotechnol. 2014;32(8):829-833. 24964173 10.1038/nbt.2950 4126851
-
(2014)
Nat Biotechnol
, vol.32
, Issue.8
, pp. 829-833
-
-
Laszlo, A.H.1
Derrington, I.M.2
Ross, B.C.3
-
27
-
-
84970992222
-
Snake venom gland cDNA sequencing using the Oxford Nanopore MinION portable DNA sequencer
-
Mulley JF Hargreaves AD: Snake venom gland cDNA sequencing using the Oxford Nanopore MinION portable DNA sequencer. bioRxiv. 2015. 10.1101/025148
-
(2015)
bioRxiv
-
-
Mulley, J.F.1
Hargreaves, A.D.2
-
28
-
-
84942520038
-
TM portable single-molecule nanopore sequencer
-
25386338, 4226419
-
Quick J Quinlan AR Loman NJ: A reference bacterial genome dataset generated on the MinION TM portable single-molecule nanopore sequencer. Gigascience. 2014;3:22. 25386338 10.1186/2047-217X-3-22 4226419
-
(2014)
Gigascience
, vol.3
, pp. 22
-
-
Quick, J.1
Quinlan, A.R.2
Loman, N.J.3
-
29
-
-
84920644670
-
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
-
25387460, 4228153
-
Salter SJ Cox MJ Turek EM: Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol. 2014;12:87. 25387460 10.1186/s12915-014-0087-z 4228153
-
(2014)
BMC Biol
, vol.12
, pp. 87
-
-
Salter, S.J.1
Cox, M.J.2
Turek, E.M.3
-
30
-
-
33846659941
-
Multiple alignment by sequence annealing
-
17237099
-
Schwartz AS Pachter L: Multiple alignment by sequence annealing. Bioinformatics. 2007;23(2):e24-e29. 17237099 10.1093/bioinformatics/btl311
-
(2007)
Bioinformatics
, vol.23
, Issue.2
, pp. e24-e29
-
-
Schwartz, A.S.1
Pachter, L.2
-
31
-
-
79958842145
-
Atomic-scale electron-beam sculpting of near-defect-free graphene nanostructures
-
21604710
-
Song B Schneider GF Xu Q: Atomic-scale electron-beam sculpting of near-defect-free graphene nanostructures. Nano Lett. 2011;11(6):2247-2250. 21604710 10.1021/nl200369r
-
(2011)
Nano Lett
, vol.11
, Issue.6
, pp. 2247-2250
-
-
Song, B.1
Schneider, G.F.2
Xu, Q.3
-
32
-
-
84943637090
-
De novo sequencing and variant calling with nanopores using PoreSeq
-
26352647
-
Szalay T Golovchenko JA: De novo sequencing and variant calling with nanopores using PoreSeq. Nat Biotechnol. 2015. 26352647 10.1038/nbt.3360
-
(2015)
Nat Biotechnol
-
-
Szalay, T.1
Golovchenko, J.A.2
-
33
-
-
84861149539
-
DNA base-calling from a nanopore using a Viterbi algorithm
-
22677395, 3353060
-
Timp W Comer J Aksimentiev A: DNA base-calling from a nanopore using a Viterbi algorithm. Biophys J. 2012;102(10):L37-L39. 22677395 10.1016/j.bpj.2012.04.009 3353060
-
(2012)
Biophys J
, vol.102
, Issue.10
, pp. L37-L39
-
-
Timp, W.1
Comer, J.2
Aksimentiev, A.3
-
34
-
-
84970974695
-
Sequencing ultra-long DNA molecules with the Oxford Nanopore MinION
-
Urban JM Bliss J Lawrence CE: Sequencing ultra-long DNA molecules with the Oxford Nanopore MinION. bioRxiv. 2015. 10.1101/019281
-
(2015)
bioRxiv
-
-
Urban, J.M.1
Bliss, J.2
Lawrence, C.E.3
-
35
-
-
77958487369
-
Identification of epigenetic DNA modifications with a protein nanopore
-
20927439, 3147113
-
Wallace EVB Stoddart D Heron AJ: Identification of epigenetic DNA modifications with a protein nanopore. Chem Commun ( Camb). 2010;46(43):8195-8197. 20927439 10.1039/c0cc02864a 3147113
-
(2010)
Chem Commun (Camb).
, vol.46
, Issue.43
, pp. 8195-8197
-
-
Wallace, E.V.B.1
Stoddart, D.2
Heron, A.J.3
-
36
-
-
84938851187
-
MinION nanopore sequencing of an influenza genome
-
26347715, 4540950
-
Wang J Moore NE Deng YM: MinION nanopore sequencing of an influenza genome. Front Microbiol. 2015;6:766. 26347715 10.3389/fmicb.2015.00766 4540950
-
(2015)
Front Microbiol
, vol.6
, pp. 766
-
-
Wang, J.1
Moore, N.E.2
Deng, Y.M.3
-
37
-
-
84922368174
-
poRe: an R package for the visualization and analysis of nanopore sequencing data
-
25173419, 4271141
-
Watson M Thomson M Risse J: poRe: an R package for the visualization and analysis of nanopore sequencing data. Bioinformatics. 2015;31(1):114-115. 25173419 10.1093/bioinformatics/btu590 4271141
-
(2015)
Bioinformatics
, vol.31
, Issue.1
, pp. 114-115
-
-
Watson, M.1
Thomson, M.2
Risse, J.3
-
38
-
-
84899090573
-
Kraken: ultrafast metagenomic sequence classification using exact alignments
-
24580807, 4053813
-
Wood DE Salzberg SL: Kraken: ultrafast metagenomic sequence classification using exact alignments. Genome Biol. 2014;15(3):R46. 24580807 10.1186/gb-2014-15-3-r46 4053813
-
(2014)
Genome Biol
, vol.15
, Issue.3
, pp. R46
-
-
Wood, D.E.1
Salzberg, S.L.2
|