Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes

BMC Genomics

Volumn 15, Issue 1, 2014, Pages

  Miyamoto, Mari ^a   Motooka, Daisuke ^b   Gotoh, Kazuyoshi ^b,f   Imai, Takamasa ^c   Yoshitake, Kazutoshi ^d   Goto, Naohisa ^b   Iida, Tetsuya ^b   Yasunaga, Teruo ^b   Horii, Toshihiro ^b   Arakawa, Kazuharu ^e   Kasahara, Masahiro ^c   Nakamura, Shota ^b  

^a CLC bio Japan Inc A QIAGEN Company   (Japan)

^b OSAKA UNIVERSITY   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

^d NATIONAL INSTITUTE OF GENETICS   (Japan)

^e KEIO UNIVERSITY   (Japan)

^f OKAYAMA UNIVERSITY   (Japan)

Author keywords

de novo assembly; Illumina MiSeq; Ion Torrent PGM; Next generation sequencing; PacBio RS system; Roche 454 GS Junior

Indexed keywords

GENOMIC DNA; RIBOSOME RNA;

ANALYTIC METHOD; ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL GENOME; CONTIG MAPPING; CONTROLLED STUDY; GENE SEQUENCE; GENETIC CODE; INTERMETHOD COMPARISON; NONHUMAN; OPERON; SECOND GENERATION SEQUENCER; THIRD GENERATION SEQUENCER; VIBRIO PARAHAEMOLYTICUS; COMPARATIVE STUDY; GENETICS; GENOMICS; HIGH THROUGHPUT SEQUENCING; PROCEDURES; SEQUENCE ANALYSIS;

BACTERIA (MICROORGANISMS);

CHROMOSOMES, BACTERIAL; GENOME, BACTERIAL; GENOMICS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; SEQUENCE ANALYSIS; VIBRIO PARAHAEMOLYTICUS;

EID: 84906823754     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-699     Document Type: Article

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