-
1
-
-
84875229872
-
How cells get the message: Dynamic assembly and function of mRNA-protein complexes
-
Muller-McNicoll, M.; Neugebauer, K.M. How cells get the message: Dynamic assembly and function of mRNA-protein complexes. Nat. Rev. Genet. 2013, 14, 275-287.
-
(2013)
Nat. Rev. Genet
, vol.14
, pp. 275-287
-
-
Muller-McNicoll, M.1
Neugebauer, K.M.2
-
2
-
-
44449166478
-
RNA-binding proteins and post-transcriptional gene regulation
-
Glisovic, T.; Bachorik, J.L.; Yong, J.; Dreyfuss, G. RNA-binding proteins and post-transcriptional gene regulation. FEBS Lett. 2008, 582, 1977-1986.
-
(2008)
FEBS Lett
, vol.582
, pp. 1977-1986
-
-
Glisovic, T.1
Bachorik, J.L.2
Yong, J.3
Dreyfuss, G.4
-
3
-
-
17144424622
-
Translational control in stress and apoptosis
-
Holcik, M.; Sonenberg, N. Translational control in stress and apoptosis. Nat. Rev. Mol. Cell Biol. 2005, 6, 318-327.
-
(2005)
Nat. Rev. Mol. Cell Biol
, vol.6
, pp. 318-327
-
-
Holcik, M.1
Sonenberg, N.2
-
4
-
-
84876806808
-
RNA-binding proteins in mendelian disease
-
Castello, A.; Fischer, B.; Hentze, M.W.; Preiss, T. RNA-binding proteins in mendelian disease. Trends Genet. 2013, 29, 318-327.
-
(2013)
Trends Genet
, vol.29
, pp. 318-327
-
-
Castello, A.1
Fischer, B.2
Hentze, M.W.3
Preiss, T.4
-
5
-
-
84916640509
-
The rnaissance family: Sr proteins as multifaceted regulators of gene expression
-
Howard, J.M.; Sanford, J.R. The rnaissance family: Sr proteins as multifaceted regulators of gene expression. Wiley Interdiscip. Rev. RNA 2015, 6, 93-110.
-
(2015)
Wiley Interdiscip. Rev. RNA
, vol.6
, pp. 93-110
-
-
Howard, J.M.1
Sanford, J.R.2
-
6
-
-
84884816943
-
ELAV proteins along evolution: Back to the nucleus?
-
Colombrita, C.; Silani, V.; Ratti, A. ELAV proteins along evolution: Back to the nucleus? Mol. Cell. Neurosci. 2013, 56, 447-455.
-
(2013)
Mol. Cell. Neurosci
, vol.56
, pp. 447-455
-
-
Colombrita, C.1
Silani, V.2
Ratti, A.3
-
7
-
-
84922277120
-
A census of human RNA-binding proteins
-
Gerstberger, S.; Hafner, M.; Tuschl, T. A census of human RNA-binding proteins. Nat. Rev. Genet. 2014, 15, 829-845.
-
(2014)
Nat. Rev. Genet
, vol.15
, pp. 829-845
-
-
Gerstberger, S.1
Hafner, M.2
Tuschl, T.3
-
8
-
-
84922454174
-
High-throughput characterization of protein-RNA interactions
-
Cook, K.B.; Hughes, T.R.; Morris, Q.D. High-throughput characterization of protein-RNA interactions. Brief. Funct. Genomics 2015, 14, 74-89.
-
(2015)
Brief. Funct. Genomics
, vol.14
, pp. 74-89
-
-
Cook, K.B.1
Hughes, T.R.2
Morris, Q.D.3
-
9
-
-
84861969926
-
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
-
Castello, A.; Fischer, B.; Eichelbaum, K.; Horos, R.; Beckmann, B.M.; Strein, C.; Davey, N.E.; Humphreys, D.T.; Preiss, T.; Steinmetz, L.M.; et al. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell 2012, 149, 1393-1406.
-
(2012)
Cell
, vol.149
, pp. 1393-1406
-
-
Castello, A.1
Fischer, B.2
Eichelbaum, K.3
Horos, R.4
Beckmann, B.M.5
Strein, C.6
Davey, N.E.7
Humphreys, D.T.8
Preiss, T.9
Steinmetz, L.M.10
-
10
-
-
84861997955
-
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts
-
Baltz, A.G.; Munschauer, M.; Schwanhausser, B.; Vasile, A.; Murakawa, Y.; Schueler, M.; Youngs, N.; Penfold-Brown, D.; Drew, K.; Milek, M.; et al. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Mol. Cell 2012, 46, 674-690.
-
(2012)
Mol. Cell
, vol.46
, pp. 674-690
-
-
Baltz, A.G.1
Munschauer, M.2
Schwanhausser, B.3
Vasile, A.4
Murakawa, Y.5
Schueler, M.6
Youngs, N.7
Penfold-Brown, D.8
Drew, K.9
Milek, M.10
-
11
-
-
78649520744
-
SMN and Gemins: "We are family" Or are we?: Insights into the partnership between Gemins and the spinal muscular atrophy disease protein SMN
-
Cauchi, R.J. SMN and Gemins: "We are family" Or are we?: Insights into the partnership between Gemins and the spinal muscular atrophy disease protein SMN. BioEssays 2010, 32, 1077-1089.
-
(2010)
BioEssays
, vol.32
, pp. 1077-1089
-
-
Cauchi, R.J.1
-
12
-
-
34047100275
-
A comprehensive interaction map of the human survival of motor neuron (SMN) complex
-
Otter, S.; Grimmler, M.; Neuenkirchen, N.; Chari, A.; Sickmann, A.; Fischer, U. A comprehensive interaction map of the human survival of motor neuron (SMN) complex. J. Biol. Chem. 2007, 282, 5825-5833.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 5825-5833
-
-
Otter, S.1
Grimmler, M.2
Neuenkirchen, N.3
Chari, A.4
Sickmann, A.5
Fischer, U.6
-
13
-
-
34250641992
-
The SMN complex: An assembly machine for RNPs
-
Battle, D.J.; Kasim, M.; Yong, J.; Lotti, F.; Lau, C.K.; Mouaikel, J.; Zhang, Z.; Han, K.; Wan, L.; Dreyfuss, G. The SMN complex: An assembly machine for RNPs. Cold Spring Harb. Symp. Quant. Biol. 2006, 71, 313-320.
-
(2006)
Cold Spring Harb. Symp. Quant. Biol
, vol.71
, pp. 313-320
-
-
Battle, D.J.1
Kasim, M.2
Yong, J.3
Lotti, F.4
Lau, C.K.5
Mouaikel, J.6
Zhang, Z.7
Han, K.8
Wan, L.9
Dreyfuss, G.10
-
14
-
-
27544502473
-
Unrip, a factor implicated in cap-independent translation, associates with the cytosolic SMN complex and influences its intracellular localization
-
Grimmler, M.; Otter, S.; Peter, C.; Muller, F.; Chari, A.; Fischer, U. Unrip, a factor implicated in cap-independent translation, associates with the cytosolic SMN complex and influences its intracellular localization. Hum. Mol. Genet. 2005, 14, 3099-3111.
-
(2005)
Hum. Mol. Genet
, vol.14
, pp. 3099-3111
-
-
Grimmler, M.1
Otter, S.2
Peter, C.3
Muller, F.4
Chari, A.5
Fischer, U.6
-
15
-
-
2242443509
-
Essential role for the SMN complex in the specificity of snRNP assembly
-
Pellizzoni, L.; Yong, J.; Dreyfuss, G. Essential role for the SMN complex in the specificity of snRNP assembly. Science 2002, 298, 1775-1779.
-
(2002)
Science
, vol.298
, pp. 1775-1779
-
-
Pellizzoni, L.1
Yong, J.2
Dreyfuss, G.3
-
16
-
-
0344198459
-
The spliceosome: The most complex macromolecular machine in the cell?
-
Nilsen, T.W. The spliceosome: The most complex macromolecular machine in the cell? BioEssays 2003, 25, 1147-1149.
-
(2003)
BioEssays
, vol.25
, pp. 1147-1149
-
-
Nilsen, T.W.1
-
17
-
-
0035370526
-
Spliceosomal usnRNP biogenesis, structure and function
-
Will, C.L.; Luhrmann, R. Spliceosomal usnRNP biogenesis, structure and function. Curr. Opin. Cell Biol. 2001, 13, 290-301.
-
(2001)
Curr. Opin. Cell Biol
, vol.13
, pp. 290-301
-
-
Will, C.L.1
Luhrmann, R.2
-
18
-
-
84904464793
-
SMN control of RNP assembly: From post-transcriptional gene regulation to motor neuron disease
-
Li, D.K.; Tisdale, S.; Lotti, F.; Pellizzoni, L. SMN control of RNP assembly: From post-transcriptional gene regulation to motor neuron disease. Semin. Cell Dev. Biol. 2014, 32, 22-29.
-
(2014)
Semin. Cell Dev. Biol
, vol.32
, pp. 22-29
-
-
Li, D.K.1
Tisdale, S.2
Lotti, F.3
Pellizzoni, L.4
-
19
-
-
48249138077
-
Evolution of an RNP assembly system: A minimal SMN complex facilitates formation of usnRNPs in Drosophila melanogaster.
-
Kroiss, M.; Schultz, J.; Wiesner, J.; Chari, A.; Sickmann, A.; Fischer, U. Evolution of an RNP assembly system: A minimal SMN complex facilitates formation of usnRNPs in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 2008, 105, 10045-10050.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 10045-10050
-
-
Kroiss, M.1
Schultz, J.2
Wiesner, J.3
Chari, A.4
Sickmann, A.5
Fischer, U.6
-
20
-
-
1642514678
-
Rigor mortis encodes a novel nuclear receptor interacting protein required for ecdysone signaling during Drosophila larval development
-
Gates, J.; Lam, G.; Ortiz, J.A.; Losson, R.; Thummel, C.S. Rigor mortis encodes a novel nuclear receptor interacting protein required for ecdysone signaling during Drosophila larval development. Development 2004, 131, 25-36.
-
(2004)
Development
, vol.131
, pp. 25-36
-
-
Gates, J.1
Lam, G.2
Ortiz, J.A.3
Losson, R.4
Thummel, C.S.5
-
21
-
-
84896703087
-
The Gemin associates of survival motor neuron are required for motor function in Drosophila
-
Borg, R.; Cauchi, R.J. The Gemin associates of survival motor neuron are required for motor function in Drosophila. PLOS ONE 2013, 8, e83878.
-
(2013)
PLOS ONE
, vol.8
-
-
Borg, R.1
Cauchi, R.J.2
-
22
-
-
0037085390
-
Gemin5, a novel WD repeat protein component of the SMN complex that binds Sm proteins
-
Gubitz, A.K.; Mourelatos, Z.; Abel, L.; Rappsilber, J.; Mann, M.; Dreyfuss, G. Gemin5, a novel WD repeat protein component of the SMN complex that binds Sm proteins. J. Biol. Chem. 2002, 277, 5631-5636.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 5631-5636
-
-
Gubitz, A.K.1
Mourelatos, Z.2
Abel, L.3
Rappsilber, J.4
Mann, M.5
Dreyfuss, G.6
-
23
-
-
34547810934
-
Absence of Gemin5 from SMN complexes in nuclear Cajal bodies
-
Hao le, T.; Fuller, H.R.; Lam le, T.; Le, T.T.; Burghes, A.H.; Morris, G.E. Absence of Gemin5 from SMN complexes in nuclear Cajal bodies. BMC Cell Biol. 2007, 8, 28.
-
(2007)
BMC Cell Biol
, vol.8
, pp. 28
-
-
Hao le, T.1
Fuller, H.R.2
Lam Le, T.3
Le, T.T.4
Burghes, A.H.5
Morris, G.E.6
-
24
-
-
34948876501
-
SMN-independent subunits of the SMN complex. Identification of a small nuclear ribonucleoprotein assembly intermediate
-
Battle, D.J.; Kasim, M.; Wang, J.; Dreyfuss, G. SMN-independent subunits of the SMN complex. Identification of a small nuclear ribonucleoprotein assembly intermediate. J. Biol. Chem. 2007, 282, 27953-27959.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 27953-27959
-
-
Battle, D.J.1
Kasim, M.2
Wang, J.3
Dreyfuss, G.4
-
25
-
-
33745951912
-
The Gemin5 protein of the SMN complex identifies snRNAs
-
Battle, D.J.; Lau, C.K.; Wan, L.; Deng, H.; Lotti, F.; Dreyfuss, G. The Gemin5 protein of the SMN complex identifies snRNAs. Mol. Cell 2006, 23, 273-279.
-
(2006)
Mol. Cell
, vol.23
, pp. 273-279
-
-
Battle, D.J.1
Lau, C.K.2
Wan, L.3
Deng, H.4
Lotti, F.5
Dreyfuss, G.6
-
26
-
-
77954386239
-
Drosophila SMN complex proteins Gemin2, Gemin3, and Gemin5 are components of U bodies
-
Cauchi, R.J.; Sanchez-Pulido, L.; Liu, J.L. Drosophila SMN complex proteins Gemin2, Gemin3, and Gemin5 are components of U bodies. Exp. Cell Res. 2010, 316, 2354-2364.
-
(2010)
Exp. Cell Res
, vol.316
, pp. 2354-2364
-
-
Cauchi, R.J.1
Sanchez-Pulido, L.2
Liu, J.L.3
-
27
-
-
38849124320
-
Alterations in Gemin5 expression contribute to alternative mRNA splicing patterns and tumor cell motility
-
Lee, J.H.; Horak, C.E.; Khanna, C.; Meng, Z.; Yu, L.R.; Veenstra, T.D.; Steeg, P.S. Alterations in Gemin5 expression contribute to alternative mRNA splicing patterns and tumor cell motility. Cancer Res. 2008, 68, 639-644.
-
(2008)
Cancer Res
, vol.68
, pp. 639-644
-
-
Lee, J.H.1
Horak, C.E.2
Khanna, C.3
Meng, Z.4
Yu, L.R.5
Veenstra, T.D.6
Steeg, P.S.7
-
28
-
-
70449731052
-
Altered gene and protein expression by Nm23-H1 in metastasis suppression
-
Lee, J.H.; Marshall, J.C.; Steeg, P.S.; Horak, C.E. Altered gene and protein expression by Nm23-H1 in metastasis suppression. Mol. Cell. Biochem. 2009, 329, 141-148.
-
(2009)
Mol. Cell. Biochem
, vol.329
, pp. 141-148
-
-
Lee, J.H.1
Marshall, J.C.2
Steeg, P.S.3
Horak, C.E.4
-
29
-
-
59649126267
-
A novel role for Gemin5 in mRNA translation
-
Pacheco, A.; Lopez de Quinto, S.; Ramajo, J.; Fernandez, N.; Martinez-Salas, E. A novel role for Gemin5 in mRNA translation. Nucleic Acids Res. 2009, 37, 582-590.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 582-590
-
-
Pacheco, A.1
Lopez de Quinto, S.2
Ramajo, J.3
Fernandez, N.4
Martinez-Salas, E.5
-
30
-
-
84901295973
-
Identification of novel non-canonical RNA-binding sites in Gemin5 involved in internal initiation of translation
-
Fernandez-Chamorro, J.; Pineiro, D.; Gordon, J.M.; Ramajo, J.; Francisco-Velilla, R.; Macias, M.J.; Martinez-Salas, E. Identification of novel non-canonical RNA-binding sites in Gemin5 involved in internal initiation of translation. Nucleic Acids Res. 2014, 42, 5742-5754.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 5742-5754
-
-
Fernandez-Chamorro, J.1
Pineiro, D.2
Gordon, J.M.3
Ramajo, J.4
Francisco-Velilla, R.5
Macias, M.J.6
Martinez-Salas, E.7
-
31
-
-
34447633213
-
Positive regulation of ASK1-mediated c-Jun NH2-terminal kinase signaling pathway by the WD-repeat protein Gemin5
-
Kim, E.K.; Noh, K.T.; Yoon, J.H.; Cho, J.H.; Yoon, K.W.; Dreyfuss, G.; Choi, E.J. Positive regulation of ASK1-mediated c-Jun NH2-terminal kinase signaling pathway by the WD-repeat protein Gemin5. Cell Death Differ. 2007, 14, 1518-1528.
-
(2007)
Cell Death Differ
, vol.14
, pp. 1518-1528
-
-
Kim, E.K.1
Noh, K.T.2
Yoon, J.H.3
Cho, J.H.4
Yoon, K.W.5
Dreyfuss, G.6
Choi, E.J.7
-
32
-
-
77952575677
-
Gemin5 delivers snRNA precursors to the SMN complex for snRNP biogenesis
-
Yong, J.; Kasim, M.; Bachorik, J.L.; Wan, L.; Dreyfuss, G. Gemin5 delivers snRNA precursors to the SMN complex for snRNP biogenesis. Mol. Cell 2010, 38, 551-562.
-
(2010)
Mol. Cell
, vol.38
, pp. 551-562
-
-
Yong, J.1
Kasim, M.2
Bachorik, J.L.3
Wan, L.4
Dreyfuss, G.5
-
33
-
-
84925855108
-
The supraspliceosome-A multi-task machine for regulated pre-mRNA processing in the cell nucleus
-
Shefer, K.; Sperling, J.; Sperling, R. The supraspliceosome-A multi-task machine for regulated pre-mRNA processing in the cell nucleus. Computat. Struct. Biotechnol. J. 2014, 11, 113-122.
-
(2014)
Computat. Struct. Biotechnol. J
, vol.11
, pp. 113-122
-
-
Shefer, K.1
Sperling, J.2
Sperling, R.3
-
34
-
-
28444454020
-
Gemin proteins are required for efficient assembly of Sm-class ribonucleoproteins
-
Shpargel, K.B.; Matera, A.G. Gemin proteins are required for efficient assembly of Sm-class ribonucleoproteins. Proc. Natl. Acad. Sci. USA 2005, 102, 17372-17377.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 17372-17377
-
-
Shpargel, K.B.1
Matera, A.G.2
-
35
-
-
73649149401
-
The SMN interactome includes Myb-binding protein 1a
-
Fuller, H.R.; Man, N.T.; Lam Le, T.; Thanh Le, T.; Keough, R.A.; Asperger, A.; Gonda, T.J.; Morris, G.E. The SMN interactome includes Myb-binding protein 1a. J. Proteome Res. 2010, 9, 556-563.
-
(2010)
J. Proteome Res
, vol.9
, pp. 556-563
-
-
Fuller, H.R.1
Man, N.T.2
Lam Le, T.3
Thanh Le, T.4
Keough, R.A.5
Asperger, A.6
Gonda, T.J.7
Morris, G.E.8
-
36
-
-
66149121109
-
Gemin5-snRNA interaction reveals an RNA binding function for WD repeat domains
-
Lau, C.K.; Bachorik, J.L.; Dreyfuss, G. Gemin5-snRNA interaction reveals an RNA binding function for WD repeat domains. Nat. Struct. Mol. Biol. 2009, 16, 486-491.
-
(2009)
Nat. Struct. Mol. Biol
, vol.16
, pp. 486-491
-
-
Lau, C.K.1
Bachorik, J.L.2
Dreyfuss, G.3
-
37
-
-
28544439056
-
Specific sequence features, recognized by the SMN complex, identify snRNAs and determine their fate as snRNPs
-
Golembe, T.J.; Yong, J.; Dreyfuss, G. Specific sequence features, recognized by the SMN complex, identify snRNAs and determine their fate as snRNPs. Mol. Cell. Biol. 2005, 25, 10989-11004.
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 10989-11004
-
-
Golembe, T.J.1
Yong, J.2
Dreyfuss, G.3
-
38
-
-
9744246907
-
The special Sm core structure of the U7 snRNP: Far-reaching significance of a small nuclear ribonucleoprotein
-
Schumperli, D.; Pillai, R.S. The special Sm core structure of the U7 snRNP: Far-reaching significance of a small nuclear ribonucleoprotein. Cell. Mol. Life Sci. 2004, 61, 2560-2570.
-
(2004)
Cell. Mol. Life Sci
, vol.61
, pp. 2560-2570
-
-
Schumperli, D.1
Pillai, R.S.2
-
39
-
-
33744980686
-
Quantitative proteomics identifies Gemin5, a scaffolding protein involved in ribonucleoprotein assembly, as a novel partner for eukaryotic initiation factor 4E
-
Fierro-Monti, I.; Mohammed, S.; Matthiesen, R.; Santoro, R.; Burns, J.S.; Williams, D.J.; Proud, C.G.; Kassem, M.; Jensen, O.N.; Roepstorff, P. Quantitative proteomics identifies Gemin5, a scaffolding protein involved in ribonucleoprotein assembly, as a novel partner for eukaryotic initiation factor 4E. J. Proteome Res. 2006, 5, 1367-1378.
-
(2006)
J. Proteome Res
, vol.5
, pp. 1367-1378
-
-
Fierro-Monti, I.1
Mohammed, S.2
Matthiesen, R.3
Santoro, R.4
Burns, J.S.5
Williams, D.J.6
Proud, C.G.7
Kassem, M.8
Jensen, O.N.9
Roepstorff, P.10
-
40
-
-
84884587610
-
Stress granules and cell signaling: More than just a passing phase?
-
Kedersha, N.; Ivanov, P.; Anderson, P. Stress granules and cell signaling: More than just a passing phase? Trends Biochem. Sci. 2013, 38, 494-506.
-
(2013)
Trends Biochem. Sci
, vol.38
, pp. 494-506
-
-
Kedersha, N.1
Ivanov, P.2
Anderson, P.3
-
41
-
-
70349193390
-
Identification of Gemin5 as a novel 7-methylguanosine cap-binding protein
-
Bradrick, S.S.; Gromeier, M. Identification of Gemin5 as a novel 7-methylguanosine cap-binding protein. PLOS ONE 2009, 4, e7030.
-
(2009)
PLOS ONE
, vol.4
-
-
Bradrick, S.S.1
Gromeier, M.2
-
42
-
-
13444259647
-
Regulation of cap-dependent translation by eIF4E inhibitory proteins
-
Richter, J.D.; Sonenberg, N. Regulation of cap-dependent translation by eIF4E inhibitory proteins. Nature 2005, 433, 477-480.
-
(2005)
Nature
, vol.433
, pp. 477-480
-
-
Richter, J.D.1
Sonenberg, N.2
-
43
-
-
0029969687
-
Structural analysis of the interaction of the pyrimidine tract-binding protein with the internal ribosomal entry site of encephalomyocarditis virus and foot-and-mouth disease virus RNAs
-
Kolupaeva, V.G.; Hellen, C.U.; Shatsky, I.N. Structural analysis of the interaction of the pyrimidine tract-binding protein with the internal ribosomal entry site of encephalomyocarditis virus and foot-and-mouth disease virus RNAs. RNA 1996, 2, 1199-1212.
-
(1996)
RNA
, vol.2
, pp. 1199-1212
-
-
Kolupaeva, V.G.1
Hellen, C.U.2
Shatsky, I.N.3
-
44
-
-
79959452628
-
Common conformational changes induced in type 2 picornavirus IRESs by cognate trans-acting factors
-
Yu, Y.; Abaeva, I.S.; Marintchev, A.; Pestova, T.V.; Hellen, C.U. Common conformational changes induced in type 2 picornavirus IRESs by cognate trans-acting factors. Nucleic Acids Res. 2011, 39, 4851-4865.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 4851-4865
-
-
Yu, Y.1
Abaeva, I.S.2
Marintchev, A.3
Pestova, T.V.4
Hellen, C.U.5
-
45
-
-
84875417552
-
Gemin5 promotes IRES interaction and translation control through its C-terminal region
-
Pineiro, D.; Fernandez, N.; Ramajo, J.; Martinez-Salas, E. Gemin5 promotes IRES interaction and translation control through its C-terminal region. Nucleic Acids Res. 2013, 41, 1017-1028.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 1017-1028
-
-
Pineiro, D.1
Fernandez, N.2
Ramajo, J.3
Martinez-Salas, E.4
-
46
-
-
84931560471
-
Picornavirus IRES elements: RNA structure and host protein interactions
-
Martinez-Salas, E.; Francisco-Velilla, R.; Fernandez-Chamorro, J.; Lozano, G.; Diaz-Toledano, R. Picornavirus IRES elements: RNA structure and host protein interactions. Virus Res. 2015, doi:10.1016/ j.virusres.2015.01.012.
-
(2015)
Virus Res
-
-
Martinez-Salas, E.1
Francisco-Velilla, R.2
Fernandez-Chamorro, J.3
Lozano, G.4
Diaz-Toledano, R.5
-
47
-
-
0025789625
-
Interaction of a cellular 57-kilodalton protein with the internal translation initiation site of foot-and-mouth disease virus
-
Luz, N.; Beck, E. Interaction of a cellular 57-kilodalton protein with the internal translation initiation site of foot-and-mouth disease virus. J. Virol. 1991, 65, 6486-6494.
-
(1991)
J. Virol
, vol.65
, pp. 6486-6494
-
-
Luz, N.1
Beck, E.2
-
48
-
-
80455168337
-
Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation
-
Fernandez, N.; Fernandez-Miragall, O.; Ramajo, J.; Garcia-Sacristan, A.; Bellora, N.; Eyras, E.; Briones, C.; Martinez-Salas, E. Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation. Nucleic Acids Res. 2011, 39, 8572-8585.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 8572-8585
-
-
Fernandez, N.1
Fernandez-Miragall, O.2
Ramajo, J.3
Garcia-Sacristan, A.4
Bellora, N.5
Eyras, E.6
Briones, C.7
Martinez-Salas, E.8
-
49
-
-
84873689836
-
Candidate RNA structures for domain 3 of the foot-and-mouth-disease virus internal ribosome entry site
-
Jung, S.; Schlick, T. Candidate RNA structures for domain 3 of the foot-and-mouth-disease virus internal ribosome entry site. Nucleic Acids Res. 2013, 41, 1483-1495.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 1483-1495
-
-
Jung, S.1
Schlick, T.2
-
50
-
-
84876466271
-
Evolutionary conserved motifs constrain the RNA structure organization of picornavirus IRES
-
Fernandez, N.; Buddrus, L.; Pineiro, D.; Martinez-Salas, E. Evolutionary conserved motifs constrain the RNA structure organization of picornavirus IRES. FEBS Lett. 2013, 587, 1353-1358.
-
(2013)
FEBS Lett
, vol.587
, pp. 1353-1358
-
-
Fernandez, N.1
Buddrus, L.2
Pineiro, D.3
Martinez-Salas, E.4
-
51
-
-
0033623486
-
Interaction of the eIF4G initiation factor with the aphthovirus IRES is essential for internal translation initiation in vivo.
-
Lopez de Quinto, S.; Martinez-Salas, E. Interaction of the eIF4G initiation factor with the aphthovirus IRES is essential for internal translation initiation in vivo. RNA 2000, 6, 1380-1392.
-
(2000)
RNA
, vol.6
, pp. 1380-1392
-
-
Lopez de Quinto, S.1
Martinez-Salas, E.2
-
52
-
-
4544269113
-
Sequence and secondary structure requirements in a highly conserved element for foot-and-mouth disease virus internal ribosome entry site activity and eIF4G binding
-
Bassili, G.; Tzima, E.; Song, Y.; Saleh, L.; Ochs, K.; Niepmann, M. Sequence and secondary structure requirements in a highly conserved element for foot-and-mouth disease virus internal ribosome entry site activity and eIF4G binding. J. Gen. Virol. 2004, 85, 2555-2565.
-
(2004)
J. Gen. Virol
, vol.85
, pp. 2555-2565
-
-
Bassili, G.1
Tzima, E.2
Song, Y.3
Saleh, L.4
Ochs, K.5
Niepmann, M.6
-
53
-
-
84906791016
-
Magnesium-dependent folding of a picornavirus IRES element modulates RNA conformation and eIF4G interaction
-
Lozano, G.; Fernandez, N.; Martinez-Salas, E. Magnesium-dependent folding of a picornavirus IRES element modulates RNA conformation and eIF4G interaction. FEBS J. 2014, 281, 3685-3700.
-
(2014)
FEBS J
, vol.281
, pp. 3685-3700
-
-
Lozano, G.1
Fernandez, N.2
Martinez-Salas, E.3
-
54
-
-
0034852292
-
IRES interaction with translation initiation factors: Functional characterization of novel RNA contacts with eIF3, eIF4B, and eIF4GII
-
Lopez de Quinto, S.; Lafuente, E.; Martinez-Salas, E. IRES interaction with translation initiation factors: Functional characterization of novel RNA contacts with eIF3, eIF4B, and eIF4GII. RNA 2001, 7, 1213-1226.
-
(2001)
RNA
, vol.7
, pp. 1213-1226
-
-
Lopez de Quinto, S.1
Lafuente, E.2
Martinez-Salas, E.3
-
55
-
-
0032990430
-
Interaction of eukaryotic initiation factor eIF4B with the internal ribosome entry site of foot-and-mouth disease virus is independent of the polypyrimidine tract-binding protein
-
Rust, R.C.; Ochs, K.; Meyer, K.; Beck, E.; Niepmann, M. Interaction of eukaryotic initiation factor eIF4B with the internal ribosome entry site of foot-and-mouth disease virus is independent of the polypyrimidine tract-binding protein. J. Virol. 1999, 73, 6111-6113.
-
(1999)
J. Virol
, vol.73
, pp. 6111-6113
-
-
Rust, R.C.1
Ochs, K.2
Meyer, K.3
Beck, E.4
Niepmann, M.5
-
56
-
-
55849150550
-
Riboproteomic analysis of polypeptides interacting with the internal ribosome-entry site element of foot-and-mouth disease viral RNA
-
Pacheco, A.; Reigadas, S.; Martinez-Salas, E. Riboproteomic analysis of polypeptides interacting with the internal ribosome-entry site element of foot-and-mouth disease viral RNA. Proteomics 2008, 8, 4782-4790.
-
(2008)
Proteomics
, vol.8
, pp. 4782-4790
-
-
Pacheco, A.1
Reigadas, S.2
Martinez-Salas, E.3
-
57
-
-
0345628581
-
Mammalian staufen is a double-stranded-RNA-and tubulin-binding protein which localizes to the rough endoplasmic reticulum
-
Wickham, L.; Duchaine, T.; Luo, M.; Nabi, I.R.; DesGroseillers, L. Mammalian staufen is a double-stranded-RNA-and tubulin-binding protein which localizes to the rough endoplasmic reticulum. Mol. Cell. Biol. 1999, 19, 2220-2230.
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 2220-2230
-
-
Wickham, L.1
Duchaine, T.2
Luo, M.3
Nabi, I.R.4
DesGroseillers, L.5
-
58
-
-
84893725356
-
Staufen1 senses overall transcript secondary structure to regulate translation
-
Ricci, E.P.; Kucukural, A.; Cenik, C.; Mercier, B.C.; Singh, G.; Heyer, E.E.; Ashar-Patel, A.; Peng, L.; Moore, M.J. Staufen1 senses overall transcript secondary structure to regulate translation. Nat. Struct. Mol. Biol. 2014, 21, 26-35.
-
(2014)
Nat. Struct. Mol. Biol
, vol.21
, pp. 26-35
-
-
Ricci, E.P.1
Kucukural, A.2
Cenik, C.3
Mercier, B.C.4
Singh, G.5
Heyer, E.E.6
Ashar-Patel, A.7
Peng, L.8
Moore, M.J.9
-
59
-
-
84898974880
-
Functional signature for the recognition of specific target mRNAs by human staufen1 protein
-
De Lucas, S.; Oliveros, J.C.; Chagoyen, M.; Ortin, J. Functional signature for the recognition of specific target mRNAs by human staufen1 protein. Nucleic Acids Res. 2014, 42, 4516-4526.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 4516-4526
-
-
De Lucas, S.1
Oliveros, J.C.2
Chagoyen, M.3
Ortin, J.4
-
60
-
-
0030820063
-
Xlrbpa, a double-stranded RNA-binding protein associated with ribosomes and heterogeneous nuclear RNPs
-
Eckmann, C.R.; Jantsch, M.F. Xlrbpa, a double-stranded RNA-binding protein associated with ribosomes and heterogeneous nuclear RNPs. J. Cell Biol. 1997, 138, 239-253.
-
(1997)
J. Cell Biol
, vol.138
, pp. 239-253
-
-
Eckmann, C.R.1
Jantsch, M.F.2
-
61
-
-
0027478445
-
Relatedness of an RNA-binding motif in human immunodeficiency virus type 1 TAR RNA-binding protein TRBP to human P1/dsI kinase and Drosophila staufen
-
Gatignol, A.; Buckler, C.; Jeang, K.T. Relatedness of an RNA-binding motif in human immunodeficiency virus type 1 TAR RNA-binding protein TRBP to human P1/dsI kinase and Drosophila staufen. Mol. Cell. Biol. 1993, 13, 2193-2202.
-
(1993)
Mol. Cell. Biol
, vol.13
, pp. 2193-2202
-
-
Gatignol, A.1
Buckler, C.2
Jeang, K.T.3
-
62
-
-
33744520104
-
Molecular basis for the recognition of primary micrornas by the Drosha-DGCR8 complex
-
Han, J.; Lee, Y.; Yeom, K.H.; Nam, J.W.; Heo, I.; Rhee, J.K.; Sohn, S.Y.; Cho, Y.; Zhang, B.T.; Kim, V.N. Molecular basis for the recognition of primary micrornas by the Drosha-DGCR8 complex. Cell 2006, 125, 887-901.
-
(2006)
Cell
, vol.125
, pp. 887-901
-
-
Han, J.1
Lee, Y.2
Yeom, K.H.3
Nam, J.W.4
Heo, I.5
Rhee, J.K.6
Sohn, S.Y.7
Cho, Y.8
Zhang, B.T.9
Kim, V.N.10
-
63
-
-
84885435444
-
The microprocessor controls the activity of mammalian retrotransposons
-
Heras, S.R.; Macias, S.; Plass, M.; Fernandez, N.; Cano, D.; Eyras, E.; Garcia-Perez, J.L.; Caceres, J.F. The microprocessor controls the activity of mammalian retrotransposons. Nat. Struct. Mol. Biol. 2013, 20, 1173-1181.
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 1173-1181
-
-
Heras, S.R.1
Macias, S.2
Plass, M.3
Fernandez, N.4
Cano, D.5
Eyras, E.6
Garcia-Perez, J.L.7
Caceres, J.F.8
-
64
-
-
0037774459
-
Lrp130, a pentatricopeptide motif protein with a noncanonical RNA-binding domain, is bound in vivo to mitochondrial and nuclear RNAs
-
Mili, S.; Pinol-Roma, S. Lrp130, a pentatricopeptide motif protein with a noncanonical RNA-binding domain, is bound in vivo to mitochondrial and nuclear RNAs. Mol. Cell. Biol. 2003, 23, 4972-4982.
-
(2003)
Mol. Cell. Biol
, vol.23
, pp. 4972-4982
-
-
Mili, S.1
Pinol-Roma, S.2
-
65
-
-
0030027575
-
Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities
-
Dember, L.M.; Kim, N.D.; Liu, K.Q.; Anderson, P. Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J. Biol. Chem. 1996, 271, 2783-2788.
-
(1996)
J. Biol. Chem
, vol.271
, pp. 2783-2788
-
-
Dember, L.M.1
Kim, N.D.2
Liu, K.Q.3
Anderson, P.4
-
66
-
-
84856929201
-
Viral subversion of host functions for picornavirus translation and RNA replication
-
Chase, A.J.; Semler, B.L. Viral subversion of host functions for picornavirus translation and RNA replication. Future Virol. 2012, 7, 179-191.
-
(2012)
Future Virol
, vol.7
, pp. 179-191
-
-
Chase, A.J.1
Semler, B.L.2
-
67
-
-
84870757284
-
Tinkering with translation: Protein synthesis in virus-infected cells
-
Walsh, D.; Mathews, M.B.; Mohr, I. Tinkering with translation: Protein synthesis in virus-infected cells. Cold Spring Harb. Perspect. Biol. 2013, doi:10.1101/cshperspect.a012351.
-
(2013)
Cold Spring Harb. Perspect. Biol
-
-
Walsh, D.1
Mathews, M.B.2
Mohr, I.3
-
68
-
-
42449114149
-
New insights into internal ribosome entry site elements relevant for viral gene expression
-
Martinez-Salas, E.; Pacheco, A.; Serrano, P.; Fernandez, N. New insights into internal ribosome entry site elements relevant for viral gene expression. J. Gen. Virol. 2008, 89, 611-626.
-
(2008)
J. Gen. Virol
, vol.89
, pp. 611-626
-
-
Martinez-Salas, E.1
Pacheco, A.2
Serrano, P.3
Fernandez, N.4
-
69
-
-
33646794688
-
Translational control by viral proteinases
-
Lloyd, R.E. Translational control by viral proteinases. Virus Res. 2006, 119, 76-88.
-
(2006)
Virus Res
, vol.119
, pp. 76-88
-
-
Lloyd, R.E.1
-
70
-
-
60149091189
-
Regulation of translation initiation in eukaryotes: Mechanisms and biological targets
-
Sonenberg, N.; Hinnebusch, A.G. Regulation of translation initiation in eukaryotes: Mechanisms and biological targets. Cell 2009, 136, 731-745.
-
(2009)
Cell
, vol.136
, pp. 731-745
-
-
Sonenberg, N.1
Hinnebusch, A.G.2
-
71
-
-
72149114640
-
Structural and functional diversity of viral IRESes
-
Balvay, L.; Soto Rifo, R.; Ricci, E.P.; Decimo, D.; Ohlmann, T. Structural and functional diversity of viral IRESes. Biochim. Biophys. Acta 2009, 1789, 542-557.
-
(2009)
Biochim. Biophys. Acta
, vol.1789
, pp. 542-557
-
-
Balvay, L.1
Soto Rifo, R.2
Ricci, E.P.3
Decimo, D.4
Ohlmann, T.5
-
72
-
-
42749086185
-
The impact of RNA structure on picornavirus IRES activity
-
Martinez-Salas, E. The impact of RNA structure on picornavirus IRES activity. Trends Microbiol. 2008, 16, 230-237.
-
(2008)
Trends Microbiol
, vol.16
, pp. 230-237
-
-
Martinez-Salas, E.1
-
73
-
-
77952079888
-
Translation initiation of viral mRNAs
-
Lopez-Lastra, M.; Ramdohr, P.; Letelier, A.; Vallejos, M.; Vera-Otarola, J.; Valiente-Echeverria, F. Translation initiation of viral mRNAs. Rev. Med. Virol. 2010, 20, 177-195.
-
(2010)
Rev. Med. Virol
, vol.20
, pp. 177-195
-
-
Lopez-Lastra, M.1
Ramdohr, P.2
Letelier, A.3
Vallejos, M.4
Vera-Otarola, J.5
Valiente-Echeverria, F.6
-
74
-
-
34247640056
-
Inhibition of U snRNP assembly by a virus-encoded proteinase
-
Almstead, L.L.; Sarnow, P. Inhibition of U snRNP assembly by a virus-encoded proteinase. Genes Dev. 2007, 21, 1086-1097.
-
(2007)
Genes Dev
, vol.21
, pp. 1086-1097
-
-
Almstead, L.L.1
Sarnow, P.2
-
75
-
-
57149104579
-
A motor function for the dead-box RNA helicase, Gemin3, in Drosophila
-
Cauchi, R.J.; Davies, K.E.; Liu, J.L. A motor function for the dead-box RNA helicase, Gemin3, in Drosophila. PLOS Genet. 2008, 4, e1000265.
-
(2008)
PLOS Genet
, vol.4
-
-
Cauchi, R.J.1
Davies, K.E.2
Liu, J.L.3
-
76
-
-
84862199735
-
Gemin5 proteolysis reveals a novel motif to identify l protease targets
-
Pineiro, D.; Ramajo, J.; Bradrick, S.S.; Martinez-Salas, E. Gemin5 proteolysis reveals a novel motif to identify l protease targets. Nucleic Acids Res. 2012, 40, 4942-4953.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 4942-4953
-
-
Pineiro, D.1
Ramajo, J.2
Bradrick, S.S.3
Martinez-Salas, E.4
-
77
-
-
0032813289
-
The structures of picornaviral proteinases
-
Seipelt, J.; Guarne, A.; Bergmann, E.; James, M.; Sommergruber, W.; Fita, I.; Skern, T. The structures of picornaviral proteinases. Virus Res. 1999, 62, 159-168.
-
(1999)
Virus Res
, vol.62
, pp. 159-168
-
-
Seipelt, J.1
Guarne, A.2
Bergmann, E.3
James, M.4
Sommergruber, W.5
Fita, I.6
Skern, T.7
-
78
-
-
84907466617
-
Foot-and-mouth disease virus leader proteinase: Structural insights into the mechanism of intermolecular cleavage
-
Steinberger, J.; Grishkovskaya, I.; Cencic, R.; Juliano, L.; Juliano, M.A.; Skern, T. Foot-and-mouth disease virus leader proteinase: Structural insights into the mechanism of intermolecular cleavage. Virology 2014, 468-470, 397-408.
-
(2014)
Virology
, vol.468-470
, pp. 397-408
-
-
Steinberger, J.1
Grishkovskaya, I.2
Cencic, R.3
Juliano, L.4
Juliano, M.A.5
Skern, T.6
|