-
1
-
-
53649108801
-
The potential and challenges of nanopore sequencing
-
Branton D, Daniel B, Deamer DW, Andre M, Hagan B, Benner SA, et al. The potential and challenges of nanopore sequencing. Nat Biotechnol. 2008;26:1146-53.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1146-1153
-
-
Branton, D.1
Daniel, B.2
Deamer, D.W.3
Andre, M.4
Hagan, B.5
Benner, S.A.6
-
4
-
-
84859175970
-
Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision
-
Cherf GM, Lieberman KR, Hytham R, Lam CE, Kevin K, Mark A. Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision. Nat Biotechnol. 2012;30:344-8.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 344-348
-
-
Cherf, G.M.1
Lieberman, K.R.2
Hytham, R.3
Lam, C.E.4
Kevin, K.5
Mark, A.6
-
5
-
-
84869155578
-
Individual RNA base recognition in immobilized oligonucleotides using a protein nanopore
-
Ayub M, Bayley H. Individual RNA base recognition in immobilized oligonucleotides using a protein nanopore. Nano Lett. 2012;12:5637-43.
-
(2012)
Nano Lett
, vol.12
, pp. 5637-5643
-
-
Ayub, M.1
Bayley, H.2
-
6
-
-
84859629295
-
Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase
-
Manrao EA, Derrington IM, Laszlo AH, Langford KW, Hopper MK, Nathaniel G, et al. Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase. Nat Biotechnol. 2012;30:349-53.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 349-353
-
-
Manrao, E.A.1
Derrington, I.M.2
Laszlo, A.H.3
Langford, K.W.4
Hopper, M.K.5
Nathaniel, G.6
-
7
-
-
84924388692
-
MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
-
Ashton PM, Nair S, Dallman T, Rubino S, Rabsch W, Mwaigwisya S, et al. MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island. Nat Biotechnol. 2015;33:296-300.
-
(2015)
Nat Biotechnol
, vol.33
, pp. 296-300
-
-
Ashton, P.M.1
Nair, S.2
Dallman, T.3
Rubino, S.4
Rabsch, W.5
Mwaigwisya, S.6
-
8
-
-
84942602825
-
Determining exon connectivity in complex mRNAs by nanopore sequencing
-
Bolisetty MT, Rajadinakaran G, Graveley BR. Determining exon connectivity in complex mRNAs by nanopore sequencing. Genome Biol. 2015;16:204.
-
(2015)
Genome Biol
, vol.16
, pp. 204
-
-
Bolisetty, M.T.1
Rajadinakaran, G.2
Graveley, B.R.3
-
9
-
-
84926472171
-
Improved data analysis for the MinION nanopore sequencer
-
Jain M, Fiddes IT, Miga KH, Olsen HE, Paten B, Akeson M. Improved data analysis for the MinION nanopore sequencer. Nat Methods. 2015;12:351-6.
-
(2015)
Nat Methods
, vol.12
, pp. 351-356
-
-
Jain, M.1
Fiddes, I.T.2
Miga, K.H.3
Olsen, H.E.4
Paten, B.5
Akeson, M.6
-
10
-
-
84942520038
-
A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
-
Quick J, Quinlan A, Loman N. A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer. GigaScience. 2014;3:22.
-
(2014)
GigaScience
, vol.3
, pp. 22
-
-
Quick, J.1
Quinlan, A.2
Loman, N.3
-
11
-
-
84938850442
-
Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer
-
Kilianski A, Haas JL, Corriveau EJ, Liem AT, Willis KL, Kadavy DR, et al. Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer. Gigascience. 2015;4:12.
-
(2015)
Gigascience
, vol.4
, pp. 12
-
-
Kilianski, A.1
Haas, J.L.2
Corriveau, E.J.3
Liem, A.T.4
Willis, K.L.5
Kadavy, D.R.6
-
12
-
-
84964528782
-
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
-
Sović I, Šikić M, Wilm A, Fenlon SN, Chen S, Nagarajan N. Fast and sensitive mapping of nanopore sequencing reads with GraphMap. Nat Commun. 2016;7:11307.
-
(2016)
Nat Commun
, vol.7
, pp. 11307
-
-
Sović, I.1
Šikić, M.2
Wilm, A.3
Fenlon, S.N.4
Chen, S.5
Nagarajan, N.6
-
13
-
-
84946557268
-
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
-
Goodwin S, Gurtowski J, Ethe-Sayers S, Deshpande P, Schatz MC, McCombie WR. Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Genome Res. 2015;25:1750-6.
-
(2015)
Genome Res
, vol.25
, pp. 1750-1756
-
-
Goodwin, S.1
Gurtowski, J.2
Ethe-Sayers, S.3
Deshpande, P.4
Schatz, M.C.5
McCombie, W.R.6
-
14
-
-
84942518081
-
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
-
Greninger AL, Naccache SN, Federman S, Yu G, Mbala P, Bres V, et al. Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis. Genome Med. 2015;7:99.
-
(2015)
Genome Med
, vol.7
, pp. 99
-
-
Greninger, A.L.1
Naccache, S.N.2
Federman, S.3
Yu, G.4
Mbala, P.5
Bres, V.6
-
15
-
-
84949664420
-
Assessing the utility of the Oxford Nanopore MinION for snake venom gland cDNA sequencing
-
Hargreaves AD, Mulley JF. Assessing the utility of the Oxford Nanopore MinION for snake venom gland cDNA sequencing. Peer J. 2015;3:e1441.
-
(2015)
Peer J
, vol.3
-
-
Hargreaves, A.D.1
Mulley, J.F.2
-
16
-
-
84991528852
-
Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION™ sequencing
-
Cao MD, Ganesamoorthy D, Elliott A, Zhang H, Cooper MA, Coin LJM. Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION™ sequencing. GigaScience. 2016;5:32.
-
(2016)
GigaScience
, vol.5
, pp. 32
-
-
Cao, M.D.1
Ganesamoorthy, D.2
Elliott, A.3
Zhang, H.4
Cooper, M.A.5
Coin, L.J.M.6
-
17
-
-
84943806095
-
Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes
-
Judge K, Harris SR, Reuter S, Parkhill J, Peacock SJ. Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes. J Antimicrob Chemother. 2015;70:2775-8.
-
(2015)
J Antimicrob Chemother
, vol.70
, pp. 2775-2778
-
-
Judge, K.1
Harris, S.R.2
Reuter, S.3
Parkhill, J.4
Peacock, S.J.5
-
18
-
-
84936764311
-
Scaffolding of a bacterial genome using MinION nanopore sequencing
-
Karlsson E, Lärkeryd A, Sjödin A, Forsman M, Stenberg P. Scaffolding of a bacterial genome using MinION nanopore sequencing. Sci Rep. 2015;5:11996.
-
(2015)
Sci Rep
, vol.5
, pp. 11996
-
-
Karlsson, E.1
Lärkeryd, A.2
Sjödin, A.3
Forsman, M.4
Stenberg, P.5
-
20
-
-
84959879117
-
NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles
-
Leggett RM, Heavens D, Caccamo M, Clark MD, Davey RP. NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles. Bioinformatics. 2016;32:142-4.
-
(2016)
Bioinformatics
, vol.32
, pp. 142-144
-
-
Leggett, R.M.1
Heavens, D.2
Caccamo, M.3
Clark, M.D.4
Davey, R.P.5
-
21
-
-
84947487970
-
Twenty years of bacterial genome sequencing
-
Loman NJ, Pallen MJ. Twenty years of bacterial genome sequencing. Nat Rev Microbiol. 2015;13:787-94.
-
(2015)
Nat Rev Microbiol
, vol.13
, pp. 787-794
-
-
Loman, N.J.1
Pallen, M.J.2
-
22
-
-
84924426384
-
Poretools: a toolkit for analyzing nanopore sequence data
-
Loman NJ, Quinlan AR. Poretools: a toolkit for analyzing nanopore sequence data. Bioinformatics. 2014;30:3399-401.
-
(2014)
Bioinformatics
, vol.30
, pp. 3399-3401
-
-
Loman, N.J.1
Quinlan, A.R.2
-
23
-
-
85019264879
-
Genome assembly using Nanopore-guided long and error-free DNA reads
-
Madoui M-A, Engelen S, Cruaud C, Belser C, Bertrand L, Alberti A, et al. Genome assembly using Nanopore-guided long and error-free DNA reads. BMC Genomics. 2015;16:327.
-
(2015)
BMC Genomics
, vol.16
, pp. 327
-
-
Madoui, M.-A.1
Engelen, S.2
Cruaud, C.3
Belser, C.4
Bertrand, L.5
Alberti, A.6
-
24
-
-
84907952658
-
A first look at the Oxford Nanopore MinION sequencer
-
Mikheyev AS, Tin MMY. A first look at the Oxford Nanopore MinION sequencer. Mol Ecol Resour. 2014;14:1097-102.
-
(2014)
Mol Ecol Resour
, vol.14
, pp. 1097-1102
-
-
Mikheyev, A.S.1
Tin, M.M.Y.2
-
25
-
-
85002996580
-
Nanopore sequencing of a DNA library prepared from formalin-fixed paraffin-embedded tissue
-
Miles G, Hoisington-Lopez J, Duncavage E. Nanopore sequencing of a DNA library prepared from formalin-fixed paraffin-embedded tissue. Lab Invest. 2015;95 Suppl 1:520-1.
-
(2015)
Lab Invest
, vol.95
, pp. 520-521
-
-
Miles, G.1
Hoisington-Lopez, J.2
Duncavage, E.3
-
26
-
-
84884404382
-
Metagenomics for pathogen detection in public health
-
Miller RR, Montoya V, Gardy JL, Patrick DM, Tang P. Metagenomics for pathogen detection in public health. Genome Med. 2013;5:81.
-
(2013)
Genome Med
, vol.5
, pp. 81
-
-
Miller, R.R.1
Montoya, V.2
Gardy, J.L.3
Patrick, D.M.4
Tang, P.5
-
27
-
-
84927910898
-
Diagnostic metagenomics: potential applications to bacterial, viral and parasitic infections
-
Pallen MJ. Diagnostic metagenomics: potential applications to bacterial, viral and parasitic infections. Parasitology. 2014;141:1856-62.
-
(2014)
Parasitology
, vol.141
, pp. 1856-1862
-
-
Pallen, M.J.1
-
28
-
-
84934284959
-
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
-
Quick J, Ashton P, Calus S, Chatt C, Gossain S, Hawker J, et al. Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella. Genome Biol. 2015;16:114.
-
(2015)
Genome Biol
, vol.16
, pp. 114
-
-
Quick, J.1
Ashton, P.2
Calus, S.3
Chatt, C.4
Gossain, S.5
Hawker, J.6
-
29
-
-
84945497461
-
Bacterial whole-genome read data from the Oxford Nanopore Technologies MinION™ nanopore sequencer
-
Quick J, Loman NJ. Bacterial whole-genome read data from the Oxford Nanopore Technologies MinION™ nanopore sequencer. GigaScience Database. 2014. doi: 10.5524/100102.
-
(2014)
GigaScience Database
-
-
Quick, J.1
Loman, N.J.2
-
30
-
-
84958068536
-
Real-time, portable genome sequencing for ebola surveillance
-
Quick J, Loman NJ, Duraffour S, Simpson JT, Severi E, Cowley L, et al. Real-time, portable genome sequencing for ebola surveillance. Nature. 2016;530:228-32.
-
(2016)
Nature
, vol.530
, pp. 228-232
-
-
Quick, J.1
Loman, N.J.2
Duraffour, S.3
Simpson, J.T.4
Severi, E.5
Cowley, L.6
-
31
-
-
84942520038
-
A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
-
Quick J, Quinlan AR, Loman NJ. A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer. Gigascience. 2014;3:1-6.
-
(2014)
Gigascience
, vol.3
, pp. 1-6
-
-
Quick, J.1
Quinlan, A.R.2
Loman, N.J.3
-
32
-
-
84998747621
-
DNA barcoding and metabarcoding with the Oxford Nanopore MinION
-
Ramgren AC, Newhall HS, James KE. DNA barcoding and metabarcoding with the Oxford Nanopore MinION. Genome. 2015;58:268.
-
(2015)
Genome
, vol.58
, pp. 268
-
-
Ramgren, A.C.1
Newhall, H.S.2
James, K.E.3
-
33
-
-
84991528128
-
A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data
-
Risse J, Thomson M, Patrick S, Blakely G, Koutsovoulos G, Blaxter M, et al. A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data. Gigascience. 2015;4:60.
-
(2015)
Gigascience
, vol.4
, pp. 60
-
-
Risse, J.1
Thomson, M.2
Patrick, S.3
Blakely, G.4
Koutsovoulos, G.5
Blaxter, M.6
-
34
-
-
84938851187
-
MinION nanopore sequencing of an influenza genome
-
Wang J, Moore NE, Deng Y-M, Eccles DA, Hall RJ. MinION nanopore sequencing of an influenza genome. Front Microbiol. 2015;6:766.
-
(2015)
Front Microbiol
, vol.6
, pp. 766
-
-
Wang, J.1
Moore, N.E.2
Deng, Y.-M.3
Eccles, D.A.4
Hall, R.J.5
-
36
-
-
84954536734
-
MinIONTM: new, long read, portable nucleic acid sequencing device
-
Ward AC, Kim W. MinIONTM: new, long read, portable nucleic acid sequencing device. J Bacteriol Virol. 2015;45:285.
-
(2015)
J Bacteriol Virol
, vol.45
, pp. 285
-
-
Ward, A.C.1
Kim, W.2
-
37
-
-
84922368174
-
poRe: an R package for the visualization and analysis of nanopore sequencing data
-
Watson M, Thomson M, Risse J, Talbot R, Santoyo-Lopez J, Gharbi K, et al. poRe: an R package for the visualization and analysis of nanopore sequencing data. Bioinformatics. 2015;31:114-5.
-
(2015)
Bioinformatics
, vol.31
, pp. 114-115
-
-
Watson, M.1
Thomson, M.2
Risse, J.3
Talbot, R.4
Santoyo-Lopez, J.5
Gharbi, K.6
-
38
-
-
84953865446
-
Rapid short-read sequencing and aneuploidy detection using MinION nanopore technology
-
Wei S, Williams Z. Rapid short-read sequencing and aneuploidy detection using MinION nanopore technology. Genetics. 2016;202:37-44.
-
(2016)
Genetics
, vol.202
, pp. 37-44
-
-
Wei, S.1
Williams, Z.2
-
39
-
-
84888101866
-
Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands
-
Schreiber J, Wescoe ZL, Abu-Shumays R, Vivian JT, Baatar B, Karplus K, et al. Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands. Proc Natl Acad Sci U S A. 2013;110:18910-5.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 18910-18915
-
-
Schreiber, J.1
Wescoe, Z.L.2
Abu-Shumays, R.3
Vivian, J.T.4
Baatar, B.5
Karplus, K.6
-
40
-
-
84914170339
-
Nanopores discriminate among five C5-cytosine variants in DNA
-
Wescoe ZL, Schreiber J, Akeson M. Nanopores discriminate among five C5-cytosine variants in DNA. J Am Chem Soc. 2014;136:16582-7.
-
(2014)
J Am Chem Soc
, vol.136
, pp. 16582-16587
-
-
Wescoe, Z.L.1
Schreiber, J.2
Akeson, M.3
-
41
-
-
84998991476
-
Cytosine variant calling with high-throughput nanopore sequencing
-
bioRxiv
-
Rand AC, Jain M, Eizenga J, Musselman-Brown A, Olsen HE, Akeson M, et al. Cytosine variant calling with high-throughput nanopore sequencing. bioRxiv. 2016. doi: 10.1101/047134.
-
(2016)
-
-
Rand, A.C.1
Jain, M.2
Eizenga, J.3
Musselman-Brown, A.4
Olsen, H.E.5
Akeson, M.6
-
42
-
-
84977661068
-
Detecting DNA methylation using the Oxford Nanopore Technologies MinION sequencer
-
Simpson JT, Workman R, Zuzarte PC, David M, Dursi LJ, Timp W. Detecting DNA methylation using the Oxford Nanopore Technologies MinION sequencer. bioRxiv. 2016. doi: 10.1101/047142.
-
(2016)
bioRxiv
-
-
Simpson, J.T.1
Workman, R.2
Zuzarte, P.C.3
David, M.4
Dursi, L.J.5
Timp, W.6
-
43
-
-
84980361397
-
Real time selective sequencing using nanopore technology
-
Loose M, Malla S, Stout M. Real time selective sequencing using nanopore technology. Nat Methods. 2016;13:751-4.
-
(2016)
Nat Methods
, vol.13
, pp. 751-754
-
-
Loose, M.1
Malla, S.2
Stout, M.3
-
44
-
-
84970952281
-
MinION analysis and reference consortium: phase 1 data release and analysis
-
Ip CLC, Loose M, Tyson JR, de Cesare M, Brown BL, Jain M, et al. MinION analysis and reference consortium: phase 1 data release and analysis. F1000Res. 2015;4:1075.
-
(2015)
F1000Res
, vol.4
, pp. 1075
-
-
Ip, C.L.C.1
Loose, M.2
Tyson, J.R.3
Cesare, M.4
Brown, B.L.5
Jain, M.6
-
45
-
-
84959039248
-
Nanopore sequencing detects structural variants in cancer
-
Norris AL, Workman RE, Fan Y, Eshleman JR, Timp W. Nanopore sequencing detects structural variants in cancer. Cancer Biol Ther. 2016;17:246-53.
-
(2016)
Cancer Biol Ther
, vol.17
, pp. 246-253
-
-
Norris, A.L.1
Workman, R.E.2
Fan, Y.3
Eshleman, J.R.4
Timp, W.5
-
47
-
-
84977605342
-
DeepNano: deep recurrent neural networks for base calling in MinION nanopore reads
-
arXiv.org.arXiv:1603.09195 [q-bio.GN]
-
Boža V, Brejová B, Vinar T. DeepNano: deep recurrent neural networks for base calling in MinION nanopore reads. arXiv.org. 2016. arXiv:1603.09195 [q-bio.GN].
-
(2016)
-
-
Boža, V.1
Brejová, B.2
Vinar, T.3
-
49
-
-
84890081976
-
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
-
arXiv.org.arXiv:1303.3997 [q-bio.GN]
-
Li H. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv.org. 2013. arXiv:1303.3997 [q-bio.GN].
-
(2013)
-
-
Li, H.1
-
50
-
-
84938421951
-
A complete bacterial genome assembled de novo using only nanopore sequencing data
-
Loman NJ, Quick J, Simpson JT. A complete bacterial genome assembled de novo using only nanopore sequencing data. Nat Methods. 2015;12:733-5.
-
(2015)
Nat Methods
, vol.12
, pp. 733-735
-
-
Loman, N.J.1
Quick, J.2
Simpson, J.T.3
-
51
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, et al. Real-time DNA sequencing from single polymerase molecules. Science. 2009;323:133-8.
-
(2009)
Science
, vol.323
, pp. 133-138
-
-
Eid, J.1
Fehr, A.2
Gray, J.3
Luong, K.4
Lyle, J.5
Otto, G.6
-
52
-
-
0036203448
-
Multiple sequence alignment using partial order graphs
-
Lee C, Grasso C, Sharlow MF. Multiple sequence alignment using partial order graphs. Bioinformatics. 2002;18:452-64.
-
(2002)
Bioinformatics
, vol.18
, pp. 452-464
-
-
Lee, C.1
Grasso, C.2
Sharlow, M.F.3
-
53
-
-
84943637090
-
De novo sequencing and variant calling with nanopores using PoreSeq
-
Szalay T, Golovchenko JA. De novo sequencing and variant calling with nanopores using PoreSeq. Nat Biotechnol. 2015;33:1087-91.
-
(2015)
Nat Biotechnol
, vol.33
, pp. 1087-1091
-
-
Szalay, T.1
Golovchenko, J.A.2
-
54
-
-
85007313404
-
INC-Seq: accurate single molecule reads using nanopore sequencing
-
Li C, Chng KR, Boey JHE, Ng HQA, Wilm A, Nagarajan N. INC-Seq: accurate single molecule reads using nanopore sequencing. GigaScience. 2016;5:34.
-
(2016)
GigaScience
, vol.5
, pp. 34
-
-
Li, C.1
Chng, K.R.2
Boey, J.H.E.3
Ng, H.Q.A.4
Wilm, A.5
Nagarajan, N.6
-
55
-
-
84955114356
-
Nanopore sequencing as a rapidly deployable ebola outbreak tool
-
Hoenen T, Groseth A, Rosenke K, Fischer RJ, Hoenen A, Judson SD, et al. Nanopore sequencing as a rapidly deployable ebola outbreak tool. Emerg Infect Dis. 2016;22:331-4.
-
(2016)
Emerg Infect Dis
, vol.22
, pp. 331-334
-
-
Hoenen, T.1
Groseth, A.2
Rosenke, K.3
Fischer, R.J.4
Hoenen, A.5
Judson, S.D.6
-
56
-
-
84999053848
-
Ebola Situation Report - 11 November 2015
-
Accessed 21 Jun 2016
-
World Health Organisation. Ebola Situation Report - 11 November 2015. World Health Organisation. 2015. http://apps.who.int/ebola/current-situation/ebola-situation-report-11-november-2015. Accessed 21 Jun 2016.
-
(2015)
World Health Organisation
-
-
-
57
-
-
84968860982
-
Columbia University Ubiquitous Genomics 2015 Class, Erlich Y
-
Zaaijer S. Columbia University Ubiquitous Genomics 2015 Class, Erlich Y. Elife. 2016;5:e14258.
-
(2016)
Elife
, vol.5
-
-
Zaaijer, S.1
-
58
-
-
84998841690
-
Citizen sequencers: taking Oxford Nanopore's MinION to the classroom and beyond
-
Accessed 29 Jun 2016, 9 Dec 2015
-
Krol A. Citizen sequencers: taking Oxford Nanopore's MinION to the classroom and beyond. Bio-IT World. 9 Dec 2015. www.bio-itworld.com/2015/12/9/citizen-sequencers-taking-oxford-nanopores-minion-classroom-beyond.html. Accessed 29 Jun 2016.
-
Bio-IT World
-
-
Krol, A.1
-
59
-
-
84908164106
-
Performance comparison between rapid sequencing platforms for ultra-low coverage sequencing strategy
-
Chen S, Li S, Xie W, Li X, Zhang C, Jiang H, et al. Performance comparison between rapid sequencing platforms for ultra-low coverage sequencing strategy. PLoS One. 2014;9:e92192.
-
(2014)
PLoS One
, vol.9
-
-
Chen, S.1
Li, S.2
Xie, W.3
Li, X.4
Zhang, C.5
Jiang, H.6
-
60
-
-
85002698040
-
Now they're sequencing DNA in outer space
-
Accessed 29 Jun 2016, 10 Jun 2016
-
Regalado A. Now they're sequencing DNA in outer space. MIT Technology Review. 10 Jun 2016. www.technologyreview.com/s/601669/now-theyre-sequencing-dna-in-outer-space/. Accessed 29 Jun 2016.
-
MIT Technology Review
-
-
Regalado, A.1
-
61
-
-
84998741011
-
Sequencing DNA in the palm of your hand. 29 Sep 2015
-
Accessed 29 Jun 2016
-
Dunn A. Sequencing DNA in the palm ofyourSep2015.www.nasa.gov/mission_pages/station/research/news/biomolecule_sequencer. Accessed 29 Jun 2016.
-
-
-
Dunn, A.1
-
62
-
-
84998747454
-
Nanopore DNA sequencing and genome assembly on the International Space Station
-
Castro-Wallace SL, Chiu CY, John KK, Stahl SE, Rubins KH, McIntyre ABR, et al. Nanopore DNA sequencing and genome assembly on the International Space Station. bioRxiv. 2016. doi: 10.1101/077651.
-
(2016)
bioRxiv
-
-
astro-Wallace, S.L.1
Chiu, C.Y.2
John, K.K.3
Stahl, S.E.4
Rubins, K.H.5
McIntyre, A.B.R.6
-
63
-
-
85019296278
-
Capture, unfolding, and detection of individual tRNA molecules using a nanopore device
-
Smith AM, Abu-Shumays R, Akeson M, Bernick DL. Capture, unfolding, and detection of individual tRNA molecules using a nanopore device. Front Bioeng Biotechnol. 2015;3:91.
-
(2015)
Front Bioeng Biotechnol
, vol.3
, pp. 91
-
-
Smith, A.M.1
Abu-Shumays, R.2
Akeson, M.3
Bernick, D.L.4
-
64
-
-
84957543203
-
Electrophoretic deformation of individual transfer RNA molecules reveals their identity
-
Henley RY, Ashcroft BA, Farrell I, Cooperman BS, Lindsay SM, Wanunu M. Electrophoretic deformation of individual transfer RNA molecules reveals their identity. Nano Lett. 2016;16:138-44.
-
(2016)
Nano Lett
, vol.16
, pp. 138-144
-
-
Henley, R.Y.1
Ashcroft, B.A.2
Farrell, I.3
Cooperman, B.S.4
Lindsay, S.M.5
Wanunu, M.6
-
65
-
-
84998696112
-
Progress at UC Santa Cruz: long DNA fragments, tRNA and modified bases | Vimeo. 26 May 2016.
-
Accessed 19 Oct 2016
-
Akeson M. Progress at UC Santa Cruz: long DNA fragments, tRNA and modified bases | Vimeo. 26 May 2016. https://vimeo.com/168851338. Accessed 19 Oct 2016.
-
-
-
Akeson, M.1
-
66
-
-
84877919900
-
'Omic' technologies: genomics, transcriptomics, proteomics and metabolomics
-
Horgan RP, Kenny LC. 'Omic' technologies: genomics, transcriptomics, proteomics and metabolomics. Obstetrician Gynaecologist. 2011;13:189-95.
-
(2011)
Obstetrician Gynaecologist
, vol.13
, pp. 189-195
-
-
Horgan, R.P.1
Kenny, L.C.2
-
67
-
-
84875153533
-
Unfoldase-mediated protein translocation through an α-hemolysin nanopore
-
Nivala J, Marks DB, Akeson M. Unfoldase-mediated protein translocation through an α-hemolysin nanopore. Nat Biotechnol. 2013;31:247-50.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 247-250
-
-
Nivala, J.1
Marks, D.B.2
Akeson, M.3
-
68
-
-
84866178457
-
New and improved proteomics technologies for understanding complex biological systems: addressing a grand challenge in the life sciences
-
Hood LE, Omenn GS, Moritz RL, Aebersold R, Yamamoto KR, Amos M, et al. New and improved proteomics technologies for understanding complex biological systems: addressing a grand challenge in the life sciences. Proteomics. 2012;12:2773-83.
-
(2012)
Proteomics
, vol.12
, pp. 2773-2783
-
-
Hood, L.E.1
Omenn, G.S.2
Moritz, R.L.3
Aebersold, R.4
Yamamoto, K.R.5
Amos, M.6
-
69
-
-
33644756521
-
Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome
-
Chen Y-T, Iseli C, Venditti CA, Old LJ, Simpson AJG, Jongeneel CV. Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome. Genes Chromosomes Cancer. 2006;45:392-400.
-
(2006)
Genes Chromosomes Cancer
, vol.45
, pp. 392-400
-
-
Chen, Y.-T.1
Iseli, C.2
Venditti, C.A.3
Old, L.J.4
Simpson, A.J.G.5
Jongeneel, C.V.6
-
70
-
-
84930851165
-
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
-
Berlin K, Koren S, Chin C-S, Drake JP, Landolin JM, Phillippy AM. Assembling large genomes with single-molecule sequencing and locality-sensitive hashing. Nat Biotechnol. 2015;33:623-30.
-
(2015)
Nat Biotechnol
, vol.33
, pp. 623-630
-
-
Berlin, K.1
Koren, S.2
Chin, C.-S.3
Drake, J.P.4
Landolin, J.M.5
Phillippy, A.M.6
-
71
-
-
84978998700
-
Mash: fast genome and metagenome distance estimation using MinHash
-
Ondov BD, Treangen TJ, Melsted P, Mallonee AB, Bergman NH, Koren S, et al. Mash: fast genome and metagenome distance estimation using MinHash. Genome Biol. 2016;17:132.
-
(2016)
Genome Biol
, vol.17
, pp. 132
-
-
Ondov, B.D.1
Treangen, T.J.2
Melsted, P.3
Mallonee, A.B.4
Bergman, N.H.5
Koren, S.6
-
72
-
-
84999053751
-
Real time data analysis tools for the minION sequencing platform
-
Accessed 26 Jun 2016
-
minoTour. Real time data analysis tools for the minION sequencing platform. GitHub. 2016. https://github.com/minoTour/minoTour. Accessed 26 Jun 2016.
-
(2016)
GitHub
-
-
|