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Volumn 17, Issue 3, 2016, Pages 246-253

Nanopore sequencing detects structural variants in cancer

Author keywords

3rd generation sequencing; cancer diagnostics; Deletions; DNA sequencing; inversions; nanopore sequencing; next generation sequencing; structural variation; translocations; tumor suppressor gene

Indexed keywords

CYCLIN DEPENDENT KINASE INHIBITOR 2A; GENOMIC DNA; PROTEIN P16; SMAD4 PROTEIN; SMAD4 PROTEIN, HUMAN;

EID: 84959039248     PISSN: 15384047     EISSN: 15558576     Source Type: Journal    
DOI: 10.1080/15384047.2016.1139236     Document Type: Article
Times cited : (116)

References (27)
  • 1
    • 72849159485 scopus 로고
    • Chromosome studies on normal and leukemic human leukocytes
    • 14427847
    • P.C.Nowell, D.A.Hungerford. Chromosome studies on normal and leukemic human leukocytes. J Natl Cancer Inst 1960; 25:85-109; PMID:14427847
    • (1960) J Natl Cancer Inst , vol.25 , pp. 85-109
    • Nowell, P.C.1    Hungerford, D.A.2
  • 2
    • 0012999265 scopus 로고
    • Molecular detection of deletions involving band q14 of chromosome 13 in retinoblastomas
    • 2876425
    • T.P.Dryja, J.M.Rapaport, J.M.Joyce, R.A.Petersen. Molecular detection of deletions involving band q14 of chromosome 13 in retinoblastomas. Proc Natl Acad Sci U S A 1986; 83:7391-4; PMID:2876425; http://dx.doi.org/10.1073/pnas.83.19.7391
    • (1986) Proc Natl Acad Sci U S A , vol.83 , pp. 7391-7394
    • Dryja, T.P.1    Rapaport, J.M.2    Joyce, J.M.3    Petersen, R.A.4
  • 3
    • 37049183697 scopus 로고
    • Human breast cancer: correlation of relapse and survival with amplification of the HER-2/neu oncogene
    • 3798106
    • D.J.Slamon, G.M.Clark, S.G.Wong, W.J.Levin, A.Ullrich, W.L.McGuire. Human breast cancer: correlation of relapse and survival with amplification of the HER-2/neu oncogene. Science 1987; 235:177-82; PMID:3798106; http://dx.doi.org/10.1126/science.3798106
    • (1987) Science , vol.235 , pp. 177-182
    • Slamon, D.J.1    Clark, G.M.2    Wong, S.G.3    Levin, W.J.4    Ullrich, A.5    McGuire, W.L.6
  • 9
    • 84941630950 scopus 로고    scopus 로고
    • Circulating Tumor DNA as an Early Marker of Therapeutic Response in Patients with Metastatic Colorectal Cancer
    • 25851626
    • J.Tie, I.Kinde, Y.Wang, H.L.Wong, J.Roebert, M.Christie, M.Tacey, R.Wong, M.Singh, C.S.Karapetis, et al. Circulating Tumor DNA as an Early Marker of Therapeutic Response in Patients with Metastatic Colorectal Cancer. Ann Oncol 2015; PMID:25851626; http://dx.doi.org/10.1093/annonc/mdv177
    • (2015) Ann Oncol
    • Tie, J.1    Kinde, I.2    Wang, Y.3    Wong, H.L.4    Roebert, J.5    Christie, M.6    Tacey, M.7    Wong, R.8    Singh, M.9    Karapetis, C.S.10
  • 11
    • 84975741816 scopus 로고    scopus 로고
    • Characterization of structural variants with single molecule and hybrid sequencing approaches
    • 25355789
    • A.Ritz, A.Bashir, S.Sindi, D.Hsu, I.Hajirasouliha, B.J.Raphael. Characterization of structural variants with single molecule and hybrid sequencing approaches. Bioinformatics 2014; 30:3458-66; PMID:25355789; http://dx.doi.org/10.1093/bioinformatics/btu714
    • (2014) Bioinformatics , vol.30 , pp. 3458-3466
    • Ritz, A.1    Bashir, A.2    Sindi, S.3    Hsu, D.4    Hajirasouliha, I.5    Raphael, B.J.6
  • 13
    • 84923318319 scopus 로고    scopus 로고
    • Think Small: Nanopores for Sensing and Synthesis
    • W.Timp, A.M.Nice, E.M.Nelson, V.Kurz, K.McKelvey, G.Timp. Think Small: Nanopores for Sensing and Synthesis. IEEE Access 2014; 2:1396-408; http://dx.doi.org/10.1109/ACCESS.2014.2369506
    • (2014) IEEE Access , vol.2 , pp. 1396-1408
    • Timp, W.1    Nice, A.M.2    Nelson, E.M.3    Kurz, V.4    McKelvey, K.5    Timp, G.6
  • 14
    • 77954380684 scopus 로고    scopus 로고
    • Comparison of Sanger sequencing, pyrosequencing, and melting curve analysis for the detection of KRAS mutations: diagnostic and clinical implications
    • 20431034
    • A.C.Tsiatis, A.Norris-Kirby, R.G.Rich, M.J.Hafez, C.D.Gocke, J.R.Eshleman, K.M.Murphy. Comparison of Sanger sequencing, pyrosequencing, and melting curve analysis for the detection of KRAS mutations: diagnostic and clinical implications. J Mol Diagn 2010; 12:425-32; PMID:20431034; http://dx.doi.org/10.2353/jmoldx.2010.090188
    • (2010) J Mol Diagn , vol.12 , pp. 425-432
    • Tsiatis, A.C.1    Norris-Kirby, A.2    Rich, R.G.3    Hafez, M.J.4    Gocke, C.D.5    Eshleman, J.R.6    Murphy, K.M.7
  • 17
    • 84912096454 scopus 로고    scopus 로고
    • LUMPY: a probabilistic framework for structural variant discovery
    • 24970577
    • R.M.Layer, C.Chiang, A.R.Quinlan, I.M.Hall. LUMPY: a probabilistic framework for structural variant discovery. Gen Biol 2014; 15:R84; PMID:24970577; http://dx.doi.org/10.1186/gb-2014-15-6-r84
    • (2014) Gen Biol , vol.15 , pp. R84
    • Layer, R.M.1    Chiang, C.2    Quinlan, A.R.3    Hall, I.M.4
  • 20
    • 84938421951 scopus 로고    scopus 로고
    • A complete bacterial genome assembled de novo using only nanopore sequencing data
    • N.J.Loman, J.Quick, J.T.Simpson. A complete bacterial genome assembled de novo using only nanopore sequencing data. Nat Meth 2015; 12:733-5; PMID:26076426; http://dx.doi.org/10.1038/nmeth.3444
    • (2015) Nat Meth , vol.12 , pp. 733-735
    • Loman, N.J.1    Quick, J.2    Simpson, J.T.3
  • 21
    • 84961597306 scopus 로고    scopus 로고
    • Fast and sensitive mapping of error-prone nanopore sequencing reads with GraphMap
    • I.Sovic, M.Sikic, A.Wilm, S.N.Fenlon, S.Chen, N.Nagarajan. Fast and sensitive mapping of error-prone nanopore sequencing reads with GraphMap. bioRxiv 2015:020719.
    • (2015) bioRxiv , pp. 020719
    • Sovic, I.1    Sikic, M.2    Wilm, A.3    Fenlon, S.N.4    Chen, S.5    Nagarajan, N.6
  • 27
    • 84861149539 scopus 로고    scopus 로고
    • DNA base-calling from a nanopore using a Viterbi algorithm
    • 22677395
    • W.Timp, J.Comer, A.Aksimentiev. DNA base-calling from a nanopore using a Viterbi algorithm. Biophys J 2012; 102:L37-9; PMID:22677395; http://dx.doi.org/10.1016/j.bpj.2012.04.009
    • (2012) Biophys J , vol.102 , pp. L37-L39
    • Timp, W.1    Comer, J.2    Aksimentiev, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.