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Volumn 14, Issue 6, 2014, Pages 1097-1102

A first look at the Oxford Nanopore MinION sequencer

Author keywords

Bioinformatics; Genomics; Nanopore sequencing; Next generation sequencing

Indexed keywords

TRANSCRIPTOME; VIRUS DNA;

EID: 84907952658     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12324     Document Type: Article
Times cited : (332)

References (26)
  • 1
    • 84887372695 scopus 로고    scopus 로고
    • Quantitative high-throughput profiling of snake venom gland transcriptomes and proteomes (Ovophis okinavensis and Protobothrops flavoviridis)
    • Aird SD, Watanabe Y, Villar-Briones A et al. (2013) Quantitative high-throughput profiling of snake venom gland transcriptomes and proteomes (Ovophis okinavensis and Protobothrops flavoviridis). BMC Genomics, 14, 790.
    • (2013) BMC Genomics , vol.14 , pp. 790
    • Aird, S.D.1    Watanabe, Y.2    Villar-Briones, A.3
  • 4
    • 55549089660 scopus 로고    scopus 로고
    • Accurate whole human genome sequencing using reversible terminator chemistry
    • Bentley DR, Balasubramanian S, Swerdlow HP et al. (2008) Accurate whole human genome sequencing using reversible terminator chemistry. Nature, 456, 53-59.
    • (2008) Nature , vol.456 , pp. 53-59
    • Bentley, D.R.1    Balasubramanian, S.2    Swerdlow, H.P.3
  • 5
    • 15444350252 scopus 로고    scopus 로고
    • The complete genome sequence of Escherichia coli K-12
    • Blattner FR, Plunkett G, Bloch CA et al. (1997) The complete genome sequence of Escherichia coli K-12. Science, 277, 1453-1462.
    • (1997) Science , vol.277 , pp. 1453-1462
    • Blattner, F.R.1    Plunkett, G.2    Bloch, C.A.3
  • 6
    • 84864518203 scopus 로고    scopus 로고
    • Pacific biosciences sequencing technology for genotyping and variation discovery in human data
    • Carneiro MO, Russ C, Ross MG et al. (2012) Pacific biosciences sequencing technology for genotyping and variation discovery in human data. BMC Genomics, 13, 375.
    • (2012) BMC Genomics , vol.13 , pp. 375
    • Carneiro, M.O.1    Russ, C.2    Ross, M.G.3
  • 7
    • 84866266717 scopus 로고    scopus 로고
    • Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
    • Chaisson MJ, Tesler G (2012) Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory. BMC Bioinformatics, 13, 238.
    • (2012) BMC Bioinformatics , vol.13 , pp. 238
    • Chaisson, M.J.1    Tesler, G.2
  • 8
    • 84860570409 scopus 로고    scopus 로고
    • Next-generation sequencing: ready for the clinics?
    • Desai AN, Jere A (2012) Next-generation sequencing: ready for the clinics? Clinical genetics, 81, 503-510.
    • (2012) Clinical genetics , vol.81 , pp. 503-510
    • Desai, A.N.1    Jere, A.2
  • 9
    • 80051688000 scopus 로고    scopus 로고
    • Field guide to next-generation DNA sequencers
    • Glenn TC (2011) Field guide to next-generation DNA sequencers. Molecular Ecology Resources, 11, 759-769.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 759-769
    • Glenn, T.C.1
  • 10
    • 78651333227 scopus 로고    scopus 로고
    • Haplotype-resolved genome sequencing of a Gujarati Indian individual
    • Kitzman JO, Mackenzie AP, Adey A et al. (2011) Haplotype-resolved genome sequencing of a Gujarati Indian individual. Nature Biotechnology, 29, 59-63.
    • (2011) Nature Biotechnology , vol.29 , pp. 59-63
    • Kitzman, J.O.1    Mackenzie, A.P.2    Adey, A.3
  • 11
    • 77957051540 scopus 로고    scopus 로고
    • Real-time DNA sequencing from single polymerase molecules
    • Korlach J, Bjornson KP, Chaudhuri BP et al. (2010) Real-time DNA sequencing from single polymerase molecules. Methods in enzymology, 472, 431-455.
    • (2010) Methods in enzymology , vol.472 , pp. 431-455
    • Korlach, J.1    Bjornson, K.P.2    Chaudhuri, B.P.3
  • 12
    • 80054915847 scopus 로고    scopus 로고
    • A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
    • Li H (2011) A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics, 27, 2987-2993.
    • (2011) Bioinformatics , vol.27 , pp. 2987-2993
    • Li, H.1
  • 13
    • 84860756398 scopus 로고    scopus 로고
    • Performance comparison of benchtop high-throughput sequencing platforms
    • Loman NJ, Misra RV, Dallman TJ et al. (2012) Performance comparison of benchtop high-throughput sequencing platforms. Nature Biotechnology, 30, 434-439.
    • (2012) Nature Biotechnology , vol.30 , pp. 434-439
    • Loman, N.J.1    Misra, R.V.2    Dallman, T.J.3
  • 14
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M, Egholm M, Altman WE et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature, 437, 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3
  • 15
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna A, Hanna M, Banks E et al. (2010) The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research, 20, 1297-1303.
    • (2010) Genome Research , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3
  • 16
    • 69749090013 scopus 로고    scopus 로고
    • Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
    • McKernan KJ, Peckham HE, Costa GL et al. (2009) Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding. Genome Research, 19, 1527-1541.
    • (2009) Genome Research , vol.19 , pp. 1527-1541
    • McKernan, K.J.1    Peckham, H.E.2    Costa, G.L.3
  • 17
    • 80052226692 scopus 로고    scopus 로고
    • Sequence-specific error profile of Illumina sequencers
    • Nakamura K, Oshima T, Morimoto T et al. (2011) Sequence-specific error profile of Illumina sequencers. Nucleic Acids Research, 39, e90.
    • (2011) Nucleic Acids Research , vol.39 , pp. e90
    • Nakamura, K.1    Oshima, T.2    Morimoto, T.3
  • 19
    • 70249089090 scopus 로고    scopus 로고
    • Single-molecule sequencing of an individual human genome
    • Pushkarev D, Neff NF, Quake SR (2009) Single-molecule sequencing of an individual human genome. Nature Biotechnology, 27, 847-850.
    • (2009) Nature Biotechnology , vol.27 , pp. 847-850
    • Pushkarev, D.1    Neff, N.F.2    Quake, S.R.3
  • 20
    • 84865591846 scopus 로고    scopus 로고
    • A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
    • Quail MA, Smith M, Coupland P et al. (2012) A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics, 13, 341.
    • (2012) BMC Genomics , vol.13 , pp. 341
    • Quail, M.A.1    Smith, M.2    Coupland, P.3
  • 21
    • 79960597679 scopus 로고    scopus 로고
    • An integrated semiconductor device enabling non-optical genome sequencing
    • Rothberg JM, Hinz W, Rearick TM et al. (2011) An integrated semiconductor device enabling non-optical genome sequencing. Nature, 475, 348-352.
    • (2011) Nature , vol.475 , pp. 348-352
    • Rothberg, J.M.1    Hinz, W.2    Rearick, T.M.3
  • 24
    • 84861149539 scopus 로고    scopus 로고
    • DNA base-calling from a nanopore using a Viterbi algorithm
    • Timp W, Comer J, Aksimentiev A (2012) DNA base-calling from a nanopore using a Viterbi algorithm. Biophysical journal, 102, L37-9.
    • (2012) Biophysical journal , vol.102 , pp. L37-L39
    • Timp, W.1    Comer, J.2    Aksimentiev, A.3
  • 25
    • 77956125365 scopus 로고    scopus 로고
    • A flexible and efficient template format for circular consensus sequencing and SNP detection
    • Travers KJ, Chin C-S, Rank DR, Eid JS, Turner SW (2010) A flexible and efficient template format for circular consensus sequencing and SNP detection. Nucleic Acids Research, 38, e159.
    • (2010) Nucleic Acids Research , vol.38 , pp. e159
    • Travers, K.J.1    Chin, C.-S.2    Rank, D.R.3    Eid, J.S.4    Turner, S.W.5
  • 26
    • 84907948129 scopus 로고    scopus 로고
    • DNA Sequencing Costs: Data from the NHGRI Genome Sequencing Program (GSP). Available at: Accessed June 26, 2014.
    • Wetterstrand KA (2014) DNA Sequencing Costs: Data from the NHGRI Genome Sequencing Program (GSP). Available at: www.genome.gov/sequencingcosts. Accessed June 26, 2014.
    • (2014)
    • Wetterstrand, K.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.