Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella

Genome Biology

Volumn 16, Issue 1, 2015, Pages

  Quick, Joshua ^a   Ashton, Philip ^b   Calus, Szymon ^a   Chatt, Carole ^b   Gossain, Savita ^c   Hawker, Jeremy ^b   Nair, Satheesh ^b   Neal, Keith ^b   Nye, Kathy ^c   Peters, Tansy ^b   De Pinna, Elizabeth ^b   Robinson, Esther ^d   Struthers, Keith ^c   Webber, Mark ^a   Catto, Andrew ^c   Dallman, Timothy J ^b   Hawkey, Peter ^a,c   Loman, Nicholas J ^a  

^a UNIVERSITY OF BIRMINGHAM   (United Kingdom)

^b PUBLIC HEALTH ENGLAND   (United Kingdom)

^c UNIVERSITY HOSPITALS BIRMINGHAM NHS FOUNDATION TRUST   (United Kingdom)

^d UNIVERSITY OF WARWICK   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CLINICAL ARTICLE; CONTROLLED STUDY; DIAGNOSTIC VALUE; DNA LIBRARY; EPIDEMIC; GENETIC PROCEDURES; GENOME ANALYSIS; GENOTYPE; HIGH RISK PATIENT; HOSPITAL PATIENT; HUMAN; INFECTION CONTROL; NONHUMAN; PHYLOGENY; RAPID DRAFT SEQUENCING; REACTION TIME; REAL TIME NANOPORE SEQUENCING; SALMONELLA ENTERICA SEROVAR ENTERITIDIS; SALMONELLOSIS; SEQUENCE ANALYSIS; SEROTYPE; STRAIN IDENTIFICATION; CLASSIFICATION; CROSS INFECTION; DNA SEQUENCE; GENETICS; HOSPITALIZATION; ISOLATION AND PURIFICATION; MICROBIOLOGY; PROCEDURES; SALMONELLA INFECTIONS;

SALMONELLA; SALMONELLA ENTERITIDIS;

CROSS INFECTION; DISEASE OUTBREAKS; HOSPITALIZATION; HUMANS; SALMONELLA ENTERITIDIS; SALMONELLA INFECTIONS; SEQUENCE ANALYSIS, DNA;

EID: 84934284959     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/s13059-015-0677-2     Document Type: Article

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