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Volumn 166, Issue 2, 2016, Pages 481-491

1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana

(56)  Alonso Blanco, Carlos a   Andrade, Jorge a   Becker, Claude a   Bemm, Felix a   Bergelson, Joy a   Borgwardt, Karsten M a   Cao, Jun a   Chae, Eunyoung a   Dezwaan, Todd M a   Ding, Wei a   Ecker, Joseph R a   Exposito Alonso, Moises a   Farlow, Ashley a   Fitz, Joffrey a   Gan, Xiangchao a   Grimm, Dominik G a   Hancock, Angela M a   Henz, Stefan R a   Holm, Svante a   Horton, Matthew a   more..

a NONE

Author keywords

1001 Genomes; Arabidopsis thaliana; glacial refugia; GWAS; population expansion

Indexed keywords

ARABIDOPSIS THALIANA; ARTICLE; CONTROLLED STUDY; EPIGENETICS; FLOWERING; GENE LINKAGE DISEQUILIBRIUM; GENE MAPPING; GENE SEQUENCE; GENETIC VARIABILITY; GENOTYPE PHENOTYPE CORRELATION; LATITUDE; NONHUMAN; NORTH AFRICA; PHENOTYPIC VARIATION; PLANT GENOME; POPULATION SIZE; POPULATION STRUCTURE; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES HABITAT; ARABIDOPSIS; GENETIC EPIGENESIS; GENETIC POLYMORPHISM; GENETICS; GENOME-WIDE ASSOCIATION STUDY; PHENOTYPE;

EID: 84978218359     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2016.05.063     Document Type: Article
Times cited : (880)

References (63)
  • 1
    • 84928091332 scopus 로고    scopus 로고
    • Permutation testing in the presence of polygenic variation
    • Abney, M., Permutation testing in the presence of polygenic variation. Genet. Epidemiol. 39 (2015), 249–258.
    • (2015) Genet. Epidemiol. , vol.39 , pp. 249-258
    • Abney, M.1
  • 2
    • 84923068258 scopus 로고    scopus 로고
    • Magical mystery tour: MLO proteins in plant immunity and beyond
    • Acevedo-Garcia, J., Kusch, S., Panstruga, R., Magical mystery tour: MLO proteins in plant immunity and beyond. New Phytol. 204 (2014), 273–281.
    • (2014) New Phytol. , vol.204 , pp. 273-281
    • Acevedo-Garcia, J.1    Kusch, S.2    Panstruga, R.3
  • 3
    • 0035151437 scopus 로고    scopus 로고
    • Nucleotide sequence variation at two genes of the phenylpropanoid pathway, the FAH1 and F3H genes, in Arabidopsis thaliana
    • Aguadé, M., Nucleotide sequence variation at two genes of the phenylpropanoid pathway, the FAH1 and F3H genes, in Arabidopsis thaliana. Mol. Biol. Evol. 18 (2001), 1–9.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1-9
    • Aguadé, M.1
  • 4
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • Alexander, D.H., Novembre, J., Lange, K., Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19 (2009), 1655–1664.
    • (2009) Genome Res. , vol.19 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 5
    • 0033603516 scopus 로고    scopus 로고
    • EIN2, a bifunctional transducer of ethylene and stress responses in Arabidopsis
    • Alonso, J.M., Hirayama, T., Roman, G., Nourizadeh, S., Ecker, J.R., EIN2, a bifunctional transducer of ethylene and stress responses in Arabidopsis. Science 284 (1999), 2148–2152.
    • (1999) Science , vol.284 , pp. 2148-2152
    • Alonso, J.M.1    Hirayama, T.2    Roman, G.3    Nourizadeh, S.4    Ecker, J.R.5
  • 6
    • 33646443682 scopus 로고    scopus 로고
    • Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes
    • Aranzana, M.J., Kim, S., Zhao, K., Bakker, E., Horton, M., Jakob, K., Lister, C., Molitor, J., Shindo, C., Tang, C., et al. Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes. PLoS Genet., 1, 2005, e60.
    • (2005) PLoS Genet. , vol.1 , pp. e60
    • Aranzana, M.J.1    Kim, S.2    Zhao, K.3    Bakker, E.4    Horton, M.5    Jakob, K.6    Lister, C.7    Molitor, J.8    Shindo, C.9    Tang, C.10
  • 8
    • 75949107013 scopus 로고    scopus 로고
    • SEUSS and SEUSS-LIKE transcriptional adaptors regulate floral and embryonic development in Arabidopsis
    • Bao, F., Azhakanandam, S., Franks, R.G., SEUSS and SEUSS-LIKE transcriptional adaptors regulate floral and embryonic development in Arabidopsis. Plant Physiol. 152 (2010), 821–836.
    • (2010) Plant Physiol. , vol.152 , pp. 821-836
    • Bao, F.1    Azhakanandam, S.2    Franks, R.G.3
  • 9
    • 38349166654 scopus 로고    scopus 로고
    • Native range genetic variation in Arabidopsis thaliana is strongly geographically structured and reflects Pleistocene glacial dynamics
    • Beck, J.B., Schmuths, H., Schaal, B.A., Native range genetic variation in Arabidopsis thaliana is strongly geographically structured and reflects Pleistocene glacial dynamics. Mol. Ecol. 17 (2008), 902–915.
    • (2008) Mol. Ecol. , vol.17 , pp. 902-915
    • Beck, J.B.1    Schmuths, H.2    Schaal, B.A.3
  • 10
    • 2942645004 scopus 로고    scopus 로고
    • Ethylene response factor 1 mediates Arabidopsis resistance to the soilborne fungus Fusarium oxysporum
    • Berrocal-Lobo, M., Molina, A., Ethylene response factor 1 mediates Arabidopsis resistance to the soilborne fungus Fusarium oxysporum. Mol. Plant Microbe Interact. 17 (2004), 763–770.
    • (2004) Mol. Plant Microbe Interact. , vol.17 , pp. 763-770
    • Berrocal-Lobo, M.1    Molina, A.2
  • 11
    • 84943175876 scopus 로고    scopus 로고
    • Human genomics: The end of the start for population sequencing
    • Birney, E., Soranzo, N., Human genomics: The end of the start for population sequencing. Nature 526 (2015), 52–53.
    • (2015) Nature , vol.526 , pp. 52-53
    • Birney, E.1    Soranzo, N.2
  • 12
    • 84892406659 scopus 로고    scopus 로고
    • The genetic structure of Arabidopsis thaliana in the south-western Mediterranean range reveals a shared history between North Africa and southern Europe
    • Brennan, A.C., Méndez-Vigo, B., Haddioui, A., Martínez-Zapater, J.M., Picó, F.X., Alonso-Blanco, C., The genetic structure of Arabidopsis thaliana in the south-western Mediterranean range reveals a shared history between North Africa and southern Europe. BMC Plant Biol., 14, 2014, 17.
    • (2014) BMC Plant Biol. , vol.14 , pp. 17
    • Brennan, A.C.1    Méndez-Vigo, B.2    Haddioui, A.3    Martínez-Zapater, J.M.4    Picó, F.X.5    Alonso-Blanco, C.6
  • 13
    • 62649155943 scopus 로고    scopus 로고
    • A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals
    • Browning, B.L., Browning, S.R., A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am. J. Hum. Genet. 84 (2009), 210–223.
    • (2009) Am. J. Hum. Genet. , vol.84 , pp. 210-223
    • Browning, B.L.1    Browning, S.R.2
  • 15
    • 84879713263 scopus 로고    scopus 로고
    • The Arabidopsis ETHYLENE RESPONSE FACTOR1 regulates abiotic stress-responsive gene expression by binding to different cis-acting elements in response to different stress signals
    • Cheng, M.C., Liao, P.M., Kuo, W.W., Lin, T.P., The Arabidopsis ETHYLENE RESPONSE FACTOR1 regulates abiotic stress-responsive gene expression by binding to different cis-acting elements in response to different stress signals. Plant Physiol. 162 (2013), 1566–1582.
    • (2013) Plant Physiol. , vol.162 , pp. 1566-1582
    • Cheng, M.C.1    Liao, P.M.2    Kuo, W.W.3    Lin, T.P.4
  • 21
    • 44849112517 scopus 로고    scopus 로고
    • Demographic history of european populations of Arabidopsis thaliana
    • François, O., Blum, M.G., Jakobsson, M., Rosenberg, N.A., Demographic history of european populations of Arabidopsis thaliana. PLoS Genet., 4, 2008, e1000075.
    • (2008) PLoS Genet. , vol.4 , pp. e1000075
    • François, O.1    Blum, M.G.2    Jakobsson, M.3    Rosenberg, N.A.4
  • 26
    • 0028151259 scopus 로고
    • Haplotypic divergence coupled with lack of diversity at the Arabidopsis thaliana alcohol dehydrogenase locus: roles for both balancing and directional selection?
    • Hanfstingl, U., Berry, A., Kellogg, E.A., Costa, J.T. 3rd, Rüdiger, W., Ausubel, F.M., Haplotypic divergence coupled with lack of diversity at the Arabidopsis thaliana alcohol dehydrogenase locus: roles for both balancing and directional selection?. Genetics 138 (1994), 811–828.
    • (1994) Genetics , vol.138 , pp. 811-828
    • Hanfstingl, U.1    Berry, A.2    Kellogg, E.A.3    Costa, J.T.4    Rüdiger, W.5    Ausubel, F.M.6
  • 30
    • 84880319873 scopus 로고    scopus 로고
    • Multiple loci and genetic interactions involving flowering time genes regulate stem branching among natural variants of Arabidopsis
    • Huang, X., Ding, J., Effgen, S., Turck, F., Koornneef, M., Multiple loci and genetic interactions involving flowering time genes regulate stem branching among natural variants of Arabidopsis. New Phytol. 199 (2013), 843–857.
    • (2013) New Phytol. , vol.199 , pp. 843-857
    • Huang, X.1    Ding, J.2    Effgen, S.3    Turck, F.4    Koornneef, M.5
  • 31
    • 84910671594 scopus 로고    scopus 로고
    • Keeping it local: evidence for positive selection in Swedish Arabidopsis thaliana
    • Huber, C.D., Nordborg, M., Hermisson, J., Hellmann, I., Keeping it local: evidence for positive selection in Swedish Arabidopsis thaliana. Mol. Biol. Evol. 31 (2014), 3026–3039.
    • (2014) Mol. Biol. Evol. , vol.31 , pp. 3026-3039
    • Huber, C.D.1    Nordborg, M.2    Hermisson, J.3    Hellmann, I.4
  • 32
    • 84963770510 scopus 로고    scopus 로고
    • DELAY OF GERMINATION1 (DOG1) regulates both seed dormancy and flowering time through microRNA pathways
    • Huo, H., Wei, S., Bradford, K.J., DELAY OF GERMINATION1 (DOG1) regulates both seed dormancy and flowering time through microRNA pathways. Proc. Natl. Acad. Sci. USA 113 (2016), E2199–E2206.
    • (2016) Proc. Natl. Acad. Sci. USA , vol.113 , pp. E2199-E2206
    • Huo, H.1    Wei, S.2    Bradford, K.J.3
  • 35
    • 84893083276 scopus 로고    scopus 로고
    • APETALA2/Ethylene Responsive Factor (AP2/ERF) transcription factors: mediators of stress responses and developmental programs
    • Licausi, F., Ohme-Takagi, M., Perata, P., APETALA2/Ethylene Responsive Factor (AP2/ERF) transcription factors: mediators of stress responses and developmental programs. New Phytol. 199 (2013), 639–649.
    • (2013) New Phytol. , vol.199 , pp. 639-649
    • Licausi, F.1    Ohme-Takagi, M.2    Perata, P.3
  • 38
    • 84873513977 scopus 로고    scopus 로고
    • The flowering repressor SVP underlies a novel Arabidopsis thaliana QTL interacting with the genetic background
    • Méndez-Vigo, B., Martínez-Zapater, J.M., Alonso-Blanco, C., The flowering repressor SVP underlies a novel Arabidopsis thaliana QTL interacting with the genetic background. PLoS Genet., 9, 2013, e1003289.
    • (2013) PLoS Genet. , vol.9 , pp. e1003289
    • Méndez-Vigo, B.1    Martínez-Zapater, J.M.2    Alonso-Blanco, C.3
  • 43
    • 58149359446 scopus 로고    scopus 로고
    • Natural genetic variation of Arabidopsis thaliana is geographically structured in the Iberian peninsula
    • Picó, F.X., Méndez-Vigo, B., Martínez-Zapater, J.M., Alonso-Blanco, C., Natural genetic variation of Arabidopsis thaliana is geographically structured in the Iberian peninsula. Genetics 180 (2008), 1009–1021.
    • (2008) Genetics , vol.180 , pp. 1009-1021
    • Picó, F.X.1    Méndez-Vigo, B.2    Martínez-Zapater, J.M.3    Alonso-Blanco, C.4
  • 46
    • 84905572361 scopus 로고    scopus 로고
    • Inferring human population size and separation history from multiple genome sequences
    • Schiffels, S., Durbin, R., Inferring human population size and separation history from multiple genome sequences. Nat. Genet. 46 (2014), 919–925.
    • (2014) Nat. Genet. , vol.46 , pp. 919-925
    • Schiffels, S.1    Durbin, R.2
  • 47
    • 0038817772 scopus 로고    scopus 로고
    • Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana
    • Schmid, K.J., Sorensen, T.R., Stracke, R., Törjék, O., Altmann, T., Mitchell-Olds, T., Weisshaar, B., Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana. Genome Res. 13:6A (2003), 1250–1257.
    • (2003) Genome Res. , vol.13 , Issue.6A , pp. 1250-1257
    • Schmid, K.J.1    Sorensen, T.R.2    Stracke, R.3    Törjék, O.4    Altmann, T.5    Mitchell-Olds, T.6    Weisshaar, B.7
  • 51
    • 0034522525 scopus 로고    scopus 로고
    • Genetic isolation by distance in Arabidopsis thaliana: biogeography and postglacial colonization of Europe
    • Sharbel, T.F., Haubold, B., Mitchell-Olds, T., Genetic isolation by distance in Arabidopsis thaliana: biogeography and postglacial colonization of Europe. Mol. Ecol. 9 (2000), 2109–2118.
    • (2000) Mol. Ecol. , vol.9 , pp. 2109-2118
    • Sharbel, T.F.1    Haubold, B.2    Mitchell-Olds, T.3
  • 52
    • 3843094797 scopus 로고    scopus 로고
    • Transcriptional repression of target genes by LEUNIG and SEUSS, two interacting regulatory proteins for Arabidopsis flower development
    • Sridhar, V.V., Surendrarao, A., Gonzalez, D., Conlan, R.S., Liu, Z., Transcriptional repression of target genes by LEUNIG and SEUSS, two interacting regulatory proteins for Arabidopsis flower development. Proc. Natl. Acad. Sci. USA 101 (2004), 11494–11499.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 11494-11499
    • Sridhar, V.V.1    Surendrarao, A.2    Gonzalez, D.3    Conlan, R.S.4    Liu, Z.5
  • 53
    • 0347717907 scopus 로고    scopus 로고
    • Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3
    • Sung, S., Amasino, R.M., Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3. Nature 427 (2004), 159–164.
    • (2004) Nature , vol.427 , pp. 159-164
    • Sung, S.1    Amasino, R.M.2
  • 54
    • 85027940343 scopus 로고    scopus 로고
    • Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing
    • 100 Tomato Genome Sequencing Consortium, 2014 100 Tomato Genome Sequencing Consortium, Aflitos, S., Schijlen, E., de Jong, H., de Ridder, D., Smit, S., Finkers, R., Wang, J., Zhang, G., Li, N., et al. Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing. Plant J. 80 (2014), 136–148.
    • (2014) Plant J. , vol.80 , pp. 136-148
    • Aflitos, S.1    Schijlen, E.2    de Jong, H.3    de Ridder, D.4    Smit, S.5    Finkers, R.6    Wang, J.7    Zhang, G.8    Li, N.9
  • 55
    • 84943171338 scopus 로고    scopus 로고
    • A global reference for human genetic variation
    • 1000 Genomes Project Consortium, 2015 1000 Genomes Project Consortium. A global reference for human genetic variation. Nature 526 (2015), 68–74.
    • (2015) Nature , vol.526 , pp. 68-74
  • 56
    • 84949449158 scopus 로고    scopus 로고
    • The 3,000 rice genomes project
    • 3000 Rice Genomes Project, 2014 3000 Rice Genomes Project. The 3,000 rice genomes project. Gigascience, 3, 2014, 7.
    • (2014) Gigascience , vol.3 , pp. 7
  • 57
    • 84862832432 scopus 로고    scopus 로고
    • UGT87A2, an Arabidopsis glycosyltransferase, regulates flowering time via FLOWERING LOCUS C
    • Wang, B., Jin, S.H., Hu, H.Q., Sun, Y.G., Wang, Y.W., Han, P., Hou, B.K., UGT87A2, an Arabidopsis glycosyltransferase, regulates flowering time via FLOWERING LOCUS C. New Phytol. 194 (2012), 666–675.
    • (2012) New Phytol. , vol.194 , pp. 666-675
    • Wang, B.1    Jin, S.H.2    Hu, H.Q.3    Sun, Y.G.4    Wang, Y.W.5    Han, P.6    Hou, B.K.7
  • 58
    • 84948750469 scopus 로고    scopus 로고
    • Population genomics for understanding adaptation in wild plant species
    • Weigel, D., Nordborg, M., Population genomics for understanding adaptation in wild plant species. Annu. Rev. Genet. 49 (2015), 315–338.
    • (2015) Annu. Rev. Genet. , vol.49 , pp. 315-338
    • Weigel, D.1    Nordborg, M.2
  • 59
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir, B.S., Cockerham, C.C., Estimating F-statistics for the analysis of population structure. Evolution 38 (1984), 1358–1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 60
    • 14544306215 scopus 로고    scopus 로고
    • Molecular population genetics and the search for adaptive evolution in plants
    • Wright, S.I., Gaut, B.S., Molecular population genetics and the search for adaptive evolution in plants. Mol. Biol. Evol. 22 (2005), 506–519.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 506-519
    • Wright, S.I.1    Gaut, B.S.2
  • 61
    • 84861597739 scopus 로고    scopus 로고
    • A model-based approach for analysis of spatial structure in genetic data
    • Yang, W.Y., Novembre, J., Eskin, E., Halperin, E., A model-based approach for analysis of spatial structure in genetic data. Nat. Genet. 44 (2012), 725–731.
    • (2012) Nat. Genet. , vol.44 , pp. 725-731
    • Yang, W.Y.1    Novembre, J.2    Eskin, E.3    Halperin, E.4
  • 62
    • 84863003734 scopus 로고    scopus 로고
    • Genome-wide efficient mixed-model analysis for association studies
    • Zhou, X., Stephens, M., Genome-wide efficient mixed-model analysis for association studies. Nat. Genet. 44 (2012), 821–824.
    • (2012) Nat. Genet. , vol.44 , pp. 821-824
    • Zhou, X.1    Stephens, M.2
  • 63
    • 84926667701 scopus 로고    scopus 로고
    • Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean
    • Zhou, Z., Jiang, Y., Wang, Z., Gou, Z., Lyu, J., Li, W., Yu, Y., Shu, L., Zhao, Y., Ma, Y., et al. Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean. Nat. Biotechnol. 33 (2015), 408–414.
    • (2015) Nat. Biotechnol. , vol.33 , pp. 408-414
    • Zhou, Z.1    Jiang, Y.2    Wang, Z.3    Gou, Z.4    Lyu, J.5    Li, W.6    Yu, Y.7    Shu, L.8    Zhao, Y.9    Ma, Y.10


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