-
1
-
-
0000357469
-
The possible modification of the response of the wild type to recurrent mutations
-
Fisher,R.A. (1928) The possible modification of the response of the wild type to recurrent mutations. Am. Nat., 62, 115-126.
-
(1928)
Am. Nat.
, vol.62
, pp. 115-126
-
-
Fisher, R.A.1
-
2
-
-
0002281363
-
The part played by recurrent mutation in evolution
-
Haldane,J.B.S. (1933) The part played by recurrent mutation in evolution. Am. Nat., 67, 5-19.
-
(1933)
Am. Nat.
, vol.67
, pp. 5-19
-
-
Haldane, J.B.S.1
-
3
-
-
0001344758
-
The origination of chromatin deficiencies as minute deletions subject to insertion elsewhere
-
Muller,H.J. (1935) The origination of chromatin deficiencies as minute deletions subject to insertion elsewhere. Genetics, 17, 237-252.
-
(1935)
Genetics
, vol.17
, pp. 237-252
-
-
Muller, H.J.1
-
4
-
-
0002339389
-
Salivary chromosome maps
-
Bridges,C.A. (1935) Salivary chromosome maps. J. Hered., 26, 60-64.
-
(1935)
J. Hered.
, vol.26
, pp. 60-64
-
-
Bridges, C.A.1
-
6
-
-
0027423610
-
Evolution of duplicate genes in a tetraploid animal, Xenopus laevis
-
Hughes,M.K. and Hughes,A.L. (1993) Evolution of duplicate genes in a tetraploid animal, Xenopus laevis. Mol. Biol. Evol., 10, 1360-1369.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1360-1369
-
-
Hughes, M.K.1
Hughes, A.L.2
-
7
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force,A., Lynch,M., Pickett,F.B., Amores,A., Yan,Y.L. and Postlethwait,J. (1999) Preservation of duplicate genes by complementary, degenerative mutations. Genetics, 151, 1531-1545.
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.L.5
Postlethwait, J.6
-
8
-
-
0033972072
-
The probability of duplicate gene preservation by subfunctionalization
-
Lynch,M. and Force,A. (2000) The probability of duplicate gene preservation by subfunctionalization. Genetics, 154, 459-473.
-
(2000)
Genetics
, vol.154
, pp. 459-473
-
-
Lynch, M.1
Force, A.2
-
9
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch,M.and Conery,J.S. (2000) The evolutionary fate and consequences of duplicate genes. Science, 290, 1151-1155.
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
10
-
-
0345107239
-
Selection in the evolution of gene duplications
-
3RESEARCH0008
-
Kondrashov,F.A., Rogozin,I.B., Wolf,Y.I. and Koonin,E.V. (2002) Selection in the evolution of gene duplications. Genome Biol., 3RESEARCH0008.
-
(2002)
Genome Biol.
-
-
Kondrashov, F.A.1
Rogozin, I.B.2
Wolf, Y.I.3
Koonin, E.V.4
-
11
-
-
0037270015
-
The evolutionary demography of duplicate genes
-
Lynch,M. and Conery,J.S. (2003) The evolutionary demography of duplicate genes. J. Struct. Funct. Genomics, 3, 35-44.
-
(2003)
J. Struct. Funct. Genomics
, vol.3
, pp. 35-44
-
-
Lynch, M.1
Conery, J.S.2
-
12
-
-
15544389841
-
Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
-
He,X. and Zhang,J. (2005) Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics, 169, 1157-1164.
-
(2005)
Genetics
, vol.169
, pp. 1157-1164
-
-
He, X.1
Zhang, J.2
-
13
-
-
0024722874
-
Evolution of the vacuolar H+-ATPase: Implications for the origin of eukaryotes
-
Gogarten,J.P., Kibak,H., Dittrich,P., Taiz,L., Bowman,E.J., Bowman,B.J., Manolson,M.F., Poole,R.J., Date,T., Oshima,T. et al. (1989) Evolution of the vacuolar H+-ATPase: Implications for the origin of eukaryotes. Proc. Natl Acad. Sci. USA, 86, 6661-6665.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 6661-6665
-
-
Gogarten, J.P.1
Kibak, H.2
Dittrich, P.3
Taiz, L.4
Bowman, E.J.5
Bowman, B.J.6
Manolson, M.F.7
Poole, R.J.8
Date, T.9
Oshima, T.10
-
14
-
-
0024358140
-
Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes
-
Iwabe,N., Kuma,K., Hasegawa,M., Osawa,S. and Miyata,T. (1989) Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl Acad. Sci. USA, 86, 9355-9359.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 9355-9359
-
-
Iwabe, N.1
Kuma, K.2
Hasegawa, M.3
Osawa, S.4
Miyata, T.5
-
15
-
-
0030985059
-
Intron distribution in ancient paralogs supports random insertion and not random loss
-
Cho,G. and Doolittle,R.F. (1997) Intron distribution in ancient paralogs supports random insertion and not random loss. J. Mol. Evol., 44, 573-584.
-
(1997)
J. Mol. Evol.
, vol.44
, pp. 573-584
-
-
Cho, G.1
Doolittle, R.F.2
-
16
-
-
0036643477
-
Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: Implications for protein evolution in the RNA
-
Aravind,L., Anantharaman,V. and Koonin,E.V. (2002) Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: Implications for protein evolution in the RNA. Proteins, 48, 1-14.
-
(2002)
Proteins
, vol.48
, pp. 1-14
-
-
Aravind, L.1
Anantharaman, V.2
Koonin, E.V.3
-
17
-
-
0036601353
-
Trends in protein evolution inferred from sequence and structure analysis
-
Aravind,L., Mazumder,R., Vasudevan,S. and Koonin,E.V. (2002) Trends in protein evolution inferred from sequence and structure analysis. Curr. Opin. Struct. Biol., 12, 392-399.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 392-399
-
-
Aravind, L.1
Mazumder, R.2
Vasudevan, S.3
Koonin, E.V.4
-
18
-
-
0035179702
-
Pattern and timing of gene duplication in animal genomes
-
Friedman,R. and Hughes,A.L. (2001) Pattern and timing of gene duplication in animal genomes. Genome Res., 11, 1842-1847.
-
(2001)
Genome Res.
, vol.11
, pp. 1842-1847
-
-
Friedman, R.1
Hughes, A.L.2
-
19
-
-
0037227485
-
The temporal distribution of gene duplication events in a set of highly conserved human gene families
-
Friedman,R. and Hughes,A.L. (2003) The temporal distribution of gene duplication events in a set of highly conserved human gene families. Mol. Biol. Evol., 20, 154-161.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 154-161
-
-
Friedman, R.1
Hughes, A.L.2
-
20
-
-
0031468083
-
Gene amplification and genomic plasticity in prokaryotes
-
Romero,D. and Palacios,R. (1997) Gene amplification and genomic plasticity in prokaryotes. Annu. Rev. Genet., 31, 91-111.
-
(1997)
Annu. Rev. Genet.
, vol.31
, pp. 91-111
-
-
Romero, D.1
Palacios, R.2
-
21
-
-
0031904230
-
Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment
-
Brown,C.J., Todd,K.M. and Rosenzweig,R.F. (1998) Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment. Mol. Biol. Evol., 15, 931-942.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 931-942
-
-
Brown, C.J.1
Todd, K.M.2
Rosenzweig, R.F.3
-
23
-
-
0032104542
-
Amplification of oncogenes in human cancer cells
-
Schwab,M. (1998) Amplification of oncogenes in human cancer cells. Bioessays, 20, 473-479.
-
(1998)
Bioessays
, vol.20
, pp. 473-479
-
-
Schwab, M.1
-
24
-
-
0035046878
-
Lineage-specific gene expansions in bacterial and archaeal genomes
-
Jordan,I.K., Makarova,K.S., Spouge,J.L., Wolf,Y.I. and Koonin,E.V. (2001) Lineage-specific gene expansions in bacterial and archaeal genomes. Genome Res., 11, 555-565.
-
(2001)
Genome Res.
, vol.11
, pp. 555-565
-
-
Jordan, I.K.1
Makarova, K.S.2
Spouge, J.L.3
Wolf, Y.I.4
Koonin, E.V.5
-
25
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm,M., Storm,C.E. and Sonnhammer,E.L. (2001) Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol., 314, 1041-1052.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.3
-
26
-
-
0036066765
-
The role of lineage-specific gene family expansion in the evolution of eukaryotes
-
Lespinet,O., Wolf,Y.I., Koonin,E.V. and Aravind,L. (2002) The role of lineage-specific gene family expansion in the evolution of eukaryotes. Genome Res., 12, 1048-1059.
-
(2002)
Genome Res.
, vol.12
, pp. 1048-1059
-
-
Lespinet, O.1
Wolf, Y.I.2
Koonin, E.V.3
Aravind, L.4
-
28
-
-
0035900653
-
Reconstructing/deconstructing the earliest eukaryotes: How comparative genomics can help
-
Dacks,J.B. and Doolittle,W.F. (2001) Reconstructing/deconstructing the earliest eukaryotes: How comparative genomics can help. Cell, 107, 419-425.
-
(2001)
Cell
, vol.107
, pp. 419-425
-
-
Dacks, J.B.1
Doolittle, W.F.2
-
29
-
-
0027306799
-
Genetics of eukaryotic RNA polymerases I, II, and III
-
Archambault,J. and Friesen,J.D. (1993) Genetics of eukaryotic RNA polymerases I, II, and III. Microbiol. Rev., 57, 703-724.
-
(1993)
Microbiol. Rev.
, vol.57
, pp. 703-724
-
-
Archambault, J.1
Friesen, J.D.2
-
30
-
-
0036107982
-
Evolution of DNA polymerase families: Evidences for multiple gene exchange between cellular and viral proteins
-
Filee,J., Forterre,P., Sen-Lin,T. and Laurent,J. (2002) Evolution of DNA polymerase families: Evidences for multiple gene exchange between cellular and viral proteins. J. Mol. Evol., 54, 763-773.
-
(2002)
J. Mol. Evol.
, vol.54
, pp. 763-773
-
-
Filee, J.1
Forterre, P.2
Sen-Lin, T.3
Laurent, J.4
-
31
-
-
0032537449
-
MCM proteins: Evolution, properties, and role in DNA replication
-
Kearsey,S.E. and Labib,K. (1998) MCM proteins: Evolution, properties, and role in DNA replication. Biochim. Biophys Acta., 1398, 113-136.
-
(1998)
Biochim. Biophys. Acta
, vol.1398
, pp. 113-136
-
-
Kearsey, S.E.1
Labib, K.2
-
32
-
-
0028960169
-
Evolution of the chaperonin families (Hsp60, Hsp10 and Tcp-1) of proteins and the origin of eukaryotic cells
-
Gupta,R.S. (1995) Evolution of the chaperonin families (Hsp60, Hsp10 and Tcp-1) of proteins and the origin of eukaryotic cells. Mol. Microbiol., 15, 1-11.
-
(1995)
Mol. Microbiol.
, vol.15
, pp. 1-11
-
-
Gupta, R.S.1
-
33
-
-
8244241099
-
Evolution of the proteasome components
-
Hughes,A.L. (1997) Evolution of the proteasome components. Immunogenetics, 46, 82-92.
-
(1997)
Immunogenetics
, vol.46
, pp. 82-92
-
-
Hughes, A.L.1
-
34
-
-
0037424629
-
A comprehensive view on proteasomal sequences: Implications for the evolution of the proteasome
-
Gille,C., Goede,A., Schloetelburg,C., Preissner,R., Kloetzel,P.M., Gobel,U.B. and Frommel,C. (2003) A comprehensive view on proteasomal sequences: Implications for the evolution of the proteasome. J. Mol. Biol., 326, 1437-1448.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 1437-1448
-
-
Gille, C.1
Goede, A.2
Schloetelburg, C.3
Preissner, R.4
Kloetzel, P.M.5
Gobel, U.B.6
Frommel, C.7
-
35
-
-
0034745504
-
Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
-
Koonin,E.V., Wolf,Y.I. and Aravind,L. (2001) Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach. Genome Res., 11, 240-252.
-
(2001)
Genome Res.
, vol.11
, pp. 240-252
-
-
Koonin, E.V.1
Wolf, Y.I.2
Aravind, L.3
-
36
-
-
0034780910
-
Horizontal gene transfer in prokaryotes: Quantification and classification
-
Koonin,E.V., Makarova,K.S. and Aravind,L. (2001) Horizontal gene transfer in prokaryotes: Quantification and classification. Annu. Rev. Microbiol., 55, 709-742.
-
(2001)
Annu. Rev. Microbiol.
, vol.55
, pp. 709-742
-
-
Koonin, E.V.1
Makarova, K.S.2
Aravind, L.3
-
37
-
-
27644472372
-
Orthology, paralogy, and evolutionary genomics
-
in press
-
Koonin,E.V. (2005) Orthology, paralogy, and evolutionary genomics. Annu. Rev. Genet., in press.
-
(2005)
Annu. Rev. Genet.
-
-
Koonin, E.V.1
-
38
-
-
0032404453
-
You are what you eat: A gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
-
Doolittle,W.F. (1998) You are what you eat: A gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet., 14, 307-311.
-
(1998)
Trends Genet.
, vol.14
, pp. 307-311
-
-
Doolittle, W.F.1
-
39
-
-
0037471694
-
How big is the iceberg of which organellar genes in nuclear genomes are but the tip?
-
discussion 57-38
-
Doolittle,W.F., Boucher,Y., Nesbo,C.L., Douady,C.J., Andersson,J.O. and Roger,A.J. (2003) How big is the iceberg of which organellar genes in nuclear genomes are but the tip? Philos Trans R Soc. Lond B. Biol. Sci., 358, 39-57; discussion 57-38.
-
(2003)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.358
, pp. 39-57
-
-
Doolittle, W.F.1
Boucher, Y.2
Nesbo, C.L.3
Douady, C.J.4
Andersson, J.O.5
Roger, A.J.6
-
40
-
-
0037458124
-
Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes
-
Andersson,J.O., Sjogren,A.M., Davis,L.A., Embley,T.M. and Roger,A.J. (2003) Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes. Curr. Biol., 13, 94-104.
-
(2003)
Curr. Biol.
, vol.13
, pp. 94-104
-
-
Andersson, J.O.1
Sjogren, A.M.2
Davis, L.A.3
Embley, T.M.4
Roger, A.J.5
-
41
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov,R.L., Fedorova,N.D., Jackson,J.D., Jacobs,A.R., Kiryutin,B., Koonin,E.V., Krylov,D.M., Mazumder,R., Mekhedov,S.L., Nikolskaya,A.N. et al. (2003) The COG database: An updated version includes eukaryotes. BMC Bioinformatics, 4, 41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
-
42
-
-
0033956060
-
The COG database: A tool for genome-scale analysis of protein functions and evolution
-
Tatusov,R.L., Galperin,M.Y., Natale,D.A. and Koonin,E.V. (2000) The COG database: A tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res., 28, 33-36.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
43
-
-
0036087630
-
CDD: A database of conserved domain alignments with links to domain three-dimensional structure
-
Marchler-Bauer,A., Panchenko,A.R., Shoemaker,B.A., Thiessen,P.A., Geer,L.Y. and Bryant,S.H. (2002) CDD: A database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res., 30, 281-283.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 281-283
-
-
Marchler-Bauer, A.1
Panchenko, A.R.2
Shoemaker, B.A.3
Thiessen, P.A.4
Geer, L.Y.5
Bryant, S.H.6
-
44
-
-
0032702602
-
Reconstructing early events in eukaryotic evolution
-
Roger,A.J. (1999) Reconstructing early events in eukaryotic evolution. Am. Nat., 154, S146-S163.
-
(1999)
Am. Nat.
, vol.154
-
-
Roger, A.J.1
-
45
-
-
0034602344
-
A kingdom-level phylogeny of eukaryotes based on combined protein data
-
Baldauf,S.L., Roger,A.J., Wenk-Siefert,I. and Doolittle,W.F. (2000) A kingdom-level phylogeny of eukaryotes based on combined protein data. Science, 290, 972-977.
-
(2000)
Science
, vol.290
, pp. 972-977
-
-
Baldauf, S.L.1
Roger, A.J.2
Wenk-Siefert, I.3
Doolittle, W.F.4
-
46
-
-
0037841805
-
The deep roots of eukaryotes
-
Baldauf,S.L. (2003) The deep roots of eukaryotes. Science, 300 1703-1706.
-
(2003)
Science
, vol.300
, pp. 1703-1706
-
-
Baldauf, S.L.1
-
47
-
-
16444381885
-
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
-
Koonin,E.V., Fedorova,N.D., Jackson,J.D., Jacobs,A.R., Krylov,D.M., Makarova,K.S., Mazumder,R., Mekhedov,S.L., Nikolskaya,A.N., Rao,B.S. et al. (2004) A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes. Genome Biol., 5, R7.
-
(2004)
Genome Biol.
, vol.5
-
-
Koonin, E.V.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Krylov, D.M.5
Makarova, K.S.6
Mazumder, R.7
Mekhedov, S.L.8
Nikolskaya, A.N.9
Rao, B.S.10
-
48
-
-
2942622384
-
Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes
-
Mirkin,B.G., Fenner,T.I., Galperin,M.Y. and Koonin,E.V. (2003) Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes. BMC Evol. Biol., 3, 2.
-
(2003)
BMC Evol. Biol.
, vol.3
, pp. 2
-
-
Mirkin, B.G.1
Fenner, T.I.2
Galperin, M.Y.3
Koonin, E.V.4
-
49
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
50
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar,R.C. (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
51
-
-
0029901637
-
Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
-
Felsenstein,J. (1996) Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Methods Enzymol., 266, 418-427.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 418-427
-
-
Felsenstein, J.1
-
53
-
-
0037182878
-
A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis
-
Dragon,F., Gallagher,J.E., Compagnone-Post,P.A., Mitchell,B.M., Porwancher,K.A., Wehner,K.A., Wormsley,S., Settlage,R.E., Shabanowitz,J., Osheim,Y. et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417, 967-970.
-
(2002)
Nature
, vol.417
, pp. 967-970
-
-
Dragon, F.1
Gallagher, J.E.2
Compagnone-Post, P.A.3
Mitchell, B.M.4
Porwancher, K.A.5
Wehner, K.A.6
Wormsley, S.7
Settlage, R.E.8
Shabanowitz, J.9
Osheim, Y.10
-
54
-
-
0031470630
-
Evolutionary specialization of the nuclear targeting apparatus
-
Malik,H.S., Eickbush,T.H. and Goldfarb,D.S. (1997) Evolutionary specialization of the nuclear targeting apparatus. Proc. Natl Acad. Sci. USA, 94, 13738-13742.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 13738-13742
-
-
Malik, H.S.1
Eickbush, T.H.2
Goldfarb, D.S.3
-
55
-
-
0033782987
-
HEAT repeats associated with condensins, cohesins, and other complexes involved in chromosome-related functions
-
Neuwald,A.F. and Hirano,T. (2000) HEAT repeats associated with condensins, cohesins, and other complexes involved in chromosome-related functions. Genome Res., 10, 1445-1452.
-
(2000)
Genome Res.
, vol.10
, pp. 1445-1452
-
-
Neuwald, A.F.1
Hirano, T.2
-
56
-
-
0031470387
-
Archaea and the prokaryote-to-eukaryote transition
-
Brown,J.R. and Doolittle,W.F. (1997) Archaea and the prokaryote-to-eukaryote transition. Microbiol. Mol. Biol. Rev., 61, 456-502.
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 456-502
-
-
Brown, J.R.1
Doolittle, W.F.2
-
57
-
-
0032766490
-
Comparative genomics of the Archaea (Euryarchaeota): Evolution of conserved protein families, the stable core, and the variable shell
-
Makarova,K.S., Aravind,L., Galperin,M.Y., Grishin,N.V., Tatusov,R.L., Wolf,Y.I. and Koonin,E.V. (1999) Comparative genomics of the Archaea (Euryarchaeota): Evolution of conserved protein families, the stable core, and the variable shell. Genome Res., 9, 608-628.
-
(1999)
Genome Res.
, vol.9
, pp. 608-628
-
-
Makarova, K.S.1
Aravind, L.2
Galperin, M.Y.3
Grishin, N.V.4
Tatusov, R.L.5
Wolf, Y.I.6
Koonin, E.V.7
-
58
-
-
0033214077
-
Whereis the root of the universal tree of life?
-
Forterre,P. and Philippe,H. (1999) Whereis the root of the universal tree of life? Bioessays, 21, 871-879.
-
(1999)
Bioessays
, vol.21
, pp. 871-879
-
-
Forterre, P.1
Philippe, H.2
-
59
-
-
0036155782
-
The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification
-
Cavalier-Smith,T. (2002) The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification. Int. J. Syst. Evol. Microbiol., 52, 7-76.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 7-76
-
-
Cavalier-Smith, T.1
-
60
-
-
0036596334
-
Evolution of the Archaea
-
Forterre,P., Brochier,C. and Philippe,H. (2002) Evolution of the Archaea. Theor. Popul. Biol., 61, 409-422.
-
(2002)
Theor. Popul. Biol.
, vol.61
, pp. 409-422
-
-
Forterre, P.1
Brochier, C.2
Philippe, H.3
-
61
-
-
0032509179
-
Comparison of the complete protein sets of worm and yeast: Orthology and divergence
-
Chervitz,S.A., Aravind,L., Sherlock,G., Ball,C.A., Koonin,E.V., Dwight,S.S., Harris,M.A., Dolinski,K., Mohr,S., Smith,T. et al. (1998) Comparison of the complete protein sets of worm and yeast: orthology and divergence. Science, 282, 2022-2028.
-
(1998)
Science
, vol.282
, pp. 2022-2028
-
-
Chervitz, S.A.1
Aravind, L.2
Sherlock, G.3
Ball, C.A.4
Koonin, E.V.5
Dwight, S.S.6
Harris, M.A.7
Dolinski, K.8
Mohr, S.9
Smith, T.10
-
62
-
-
0033033183
-
The proteasome
-
Bochtler,M., Ditzel,L., Groll,M., Hartmann,C. and Huber,R. (1999) The proteasome. Annu. Rev. Biophys. Biomol. Struct., 28, 295-317.
-
(1999)
Annu. Rev. Biophys. Biomol. Struct.
, vol.28
, pp. 295-317
-
-
Bochtler, M.1
Ditzel, L.2
Groll, M.3
Hartmann, C.4
Huber, R.5
-
63
-
-
0034253588
-
Evolution and function of ubiquitin-like protein-conjugation systems
-
Hochstrasser,M. (2000) Evolution and function of ubiquitin-like protein-conjugation systems. Nature Cell. Biol., 2 E153-E157.
-
(2000)
Nature Cell. Biol.
, vol.2
-
-
Hochstrasser, M.1
-
64
-
-
0035783161
-
Gene duplication and the evolution of group II chaperonins: Implications for structure and function
-
Archibald,J.M., Blouin,C. and Doolittle,W.F. (2001) Gene duplication and the evolution of group II chaperonins: Implications for structure and function. J. Struct. Biol., 135, 157-169.
-
(2001)
J. Struct. Biol.
, vol.135
, pp. 157-169
-
-
Archibald, J.M.1
Blouin, C.2
Doolittle, W.F.3
-
65
-
-
0038157152
-
Dosage sensitivity and the evolution of gene families in yeast
-
Papp,B., Pal,C. and Hurst,L.D. (2003) Dosage sensitivity and the evolution of gene families in yeast. Nature, 424, 194-197.
-
(2003)
Nature
, vol.424
, pp. 194-197
-
-
Papp, B.1
Pal, C.2
Hurst, L.D.3
-
66
-
-
0035081235
-
Gene duplication and the structure of eukaryotic genomes
-
Friedman,R. and Hughes,A.L. (2001) Gene duplication and the structure of eukaryotic genomes. Genome Res., 11, 373-381.
-
(2001)
Genome Res.
, vol.11
, pp. 373-381
-
-
Friedman, R.1
Hughes, A.L.2
-
67
-
-
0037210828
-
Nonlinear effects in macromolecular assembly and dosage sensitivity
-
Veitia,R.A. (2003) Nonlinear effects in macromolecular assembly and dosage sensitivity. J. Theor. Biol., 220, 19-25.
-
(2003)
J. Theor. Biol.
, vol.220
, pp. 19-25
-
-
Veitia, R.A.1
-
68
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
Giaever,G., Chu,A.M., Ni,L., Connelly,C., Riles,L., Veronneau,S., Dow,S., Lucau-Danila,A., Anderson,K., Andre,B. et al. (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature, 418, 387-391.
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
Veronneau, S.6
Dow, S.7
Lucau-Danila, A.8
Anderson, K.9
Andre, B.10
-
69
-
-
0037448540
-
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
-
Kamath,R.S., Fraser,A.G., Dong,Y., Poulin,G., Durbin,R., Gotta,M., Kanapin,A., Le Bot,N., Moreno,S., Sohrmann,M. et al. (2003) Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature, 421, 231-237.
-
(2003)
Nature
, vol.421
, pp. 231-237
-
-
Kamath, R.S.1
Fraser, A.G.2
Dong, Y.3
Poulin, G.4
Durbin, R.5
Gotta, M.6
Kanapin, A.7
Le Bot, N.8
Moreno, S.9
Sohrmann, M.10
-
70
-
-
0037510025
-
A novel ring-like complex of Xenopus proteins essential for the initiation of DNA replication
-
Kubota,Y., Takase,Y., Komori,Y., Hashimoto,Y., Arata,T., Kamimura,Y., Araki,H. and Takisawa,H. (2003) A novel ring-like complex of Xenopus proteins essential for the initiation of DNA replication. Genes Dev. 17, 1141-1152.
-
(2003)
Genes Dev.
, vol.17
, pp. 1141-1152
-
-
Kubota, Y.1
Takase, Y.2
Komori, Y.3
Hashimoto, Y.4
Arata, T.5
Kamimura, Y.6
Araki, H.7
Takisawa, H.8
-
71
-
-
0037847620
-
GINS, a novel multiprotein complex required for chromosomal DNA replication in budding yeast
-
Takayama,Y., Kamimura,Y., Okawa,M., Muramatsu,S., Sugino,A. and Araki,H. (2003) GINS, a novel multiprotein complex required for chromosomal DNA replication in budding yeast. Genes Dev., 17, 1153-1165.
-
(2003)
Genes Dev.
, vol.17
, pp. 1153-1165
-
-
Takayama, Y.1
Kamimura, Y.2
Okawa, M.3
Muramatsu, S.4
Sugino, A.5
Araki, H.6
-
72
-
-
0043011009
-
Comparative genomics of Archaea: How much have we learned in six years, and what's next?
-
Makarova,K.S. and Koonin,E.V. (2003) Comparative genomics of Archaea: how much have we learned in six years, and what's next? Genome Biol. 4, 115.
-
(2003)
Genome Biol.
, vol.4
, pp. 115
-
-
Makarova, K.S.1
Koonin, E.V.2
-
73
-
-
0345306751
-
The origins of genome complexity
-
Lynch,M. and Conery,J.S. (2003) The origins of genome complexity. Science, 302, 1401-1404.
-
(2003)
Science
, vol.302
, pp. 1401-1404
-
-
Lynch, M.1
Conery, J.S.2
-
74
-
-
4344685561
-
A non-adaptationist perspective on evolution of genomic complexity or the continued dethroning of man
-
Koonin,E.V. (2004) A non-adaptationist perspective on evolution of genomic complexity or the continued dethroning of man. Cell Cycle, 3, 280-285.
-
(2004)
Cell Cycle
, vol.3
, pp. 280-285
-
-
Koonin, E.V.1
-
75
-
-
0036613237
-
Extensive genomic duplication during early chordate evolution
-
McLysaght,A., Hokamp,K. and Wolfe,K.H. (2002) Extensive genomic duplication during early chordate evolution. Nature Genet., 31 200-204.
-
(2002)
Nature Genet.
, vol.31
, pp. 200-204
-
-
McLysaght, A.1
Hokamp, K.2
Wolfe, K.H.3
-
76
-
-
0031795610
-
Eukaryote genome duplication - Where's the evidence?
-
Skrabanek,L. and Wolfe,K.H. (1998) Eukaryote genome duplication - where's the evidence? Curr. Opin. Genet. Dev., 8, 694-700.
-
(1998)
Curr. Opin. Genet. Dev.
, vol.8
, pp. 694-700
-
-
Skrabanek, L.1
Wolfe, K.H.2
-
77
-
-
0030947344
-
Molecular evidence for an ancient duplication of the entire yeast genome
-
Wolfe,K.H. and Shields,D.C. (1997) Molecular evidence for an ancient duplication of the entire yeast genome. Nature, 387, 708-713.
-
(1997)
Nature
, vol.387
, pp. 708-713
-
-
Wolfe, K.H.1
Shields, D.C.2
-
78
-
-
3042695524
-
Evolutionary genomics: Yeasts accelerate beyond BLAST
-
Wolfe,K. (2004) Evolutionary genomics: Yeasts accelerate beyond BLAST. Curr. Biol., 14, R392-394.
-
(2004)
Curr. Biol.
, vol.14
-
-
Wolfe, K.1
-
79
-
-
1942452749
-
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
-
Kellis,M., Birren,B.W. and Lander,E.S. (2004) Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature, 428, 617-624.
-
(2004)
Nature
, vol.428
, pp. 617-624
-
-
Kellis, M.1
Birren, B.W.2
Lander, E.S.3
-
80
-
-
0345874732
-
Coelomata and not Ecdysozoa: Evidence from genome-wide phylogenetic analysis
-
Wolf,Y.I., Rogozin,I.B. and Koonin,E.V. (2004) Coelomata and not Ecdysozoa: Evidence from genome-wide phylogenetic analysis. Genome Res., 14, 29-36.
-
(2004)
Genome Res.
, vol.14
, pp. 29-36
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Koonin, E.V.3
-
81
-
-
0032420333
-
JPred: A consensus secondary structure prediction server
-
Cuff,J.A., Clamp,M.E., Siddiqui,A.S., Finlay,M. and Barton,G.J. (1998) JPred: A consensus secondary structure prediction server. Bioinformatics, 14, 892-893.
-
(1998)
Bioinformatics
, vol.14
, pp. 892-893
-
-
Cuff, J.A.1
Clamp, M.E.2
Siddiqui, A.S.3
Finlay, M.4
Barton, G.J.5
|