-
2
-
-
43749098985
-
DNA methylation landscapes: Provocative insights from epigenomics
-
Suzuki M.M, and Bird A. (2008). DNA methylation landscapes: provocative insights from epigenomics. Nat. Rev. Genet, 9, 465-476.
-
(2008)
Nat. Rev. Genet
, vol.9
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
-
3
-
-
80755156279
-
Guiding DNA methylation
-
Meissner A. (2011). Guiding DNA methylation. Cell Stem Cell, 9, 388-390.
-
(2011)
Cell Stem Cell
, vol.9
, pp. 388-390
-
-
Meissner, A.1
-
4
-
-
77957970498
-
Epigenetic modifications in pluripotent and differentiated cells
-
Meissner A. (2010) Epigenetic modifications in pluripotent and differentiated cells. Nat. Biotechnol, 28, 1079-1088.
-
(2010)
Nat. Biotechnol
, vol.28
, pp. 1079-1088
-
-
Meissner, A.1
-
5
-
-
68349135058
-
Histone modification patterns and epigenetic codes
-
Lennartsson A, and Ekwall K. (2009). Histone modification patterns and epigenetic codes. Biochim et Biophys. Acta, 1790, 863-868.
-
(2009)
Biochim et Biophys. Acta
, vol.1790
, pp. 863-868
-
-
Lennartsson, A.1
Ekwall, K.2
-
6
-
-
67349190247
-
Linking DNA methylation and histone modification: Patterns and paradigms
-
Cedar H, and Bergman Y. (2009). Linking DNA methylation and histone modification: patterns and paradigms. Nat. Rev. Genet, 10, 295-304.
-
(2009)
Nat. Rev. Genet
, vol.10
, pp. 295-304
-
-
Cedar, H.1
Bergman, Y.2
-
7
-
-
0031837109
-
Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription
-
Jones P.L, Veenstra G.J, Wade P.A, Vermaak D, Kass S.U, Landsberger N, Strouboulis J, and Wolffe A.P. (1998). Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription. Nat. Genet, 19, 187-191.
-
(1998)
Nat. Genet
, vol.19
, pp. 187-191
-
-
Jones, P.L.1
Veenstra, G.J.2
Wade, P.A.3
Vermaak, D.4
Kass, S.U.5
Landsberger, N.6
Strouboulis, J.7
Wolffe, A.P.8
-
8
-
-
34547725157
-
DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA
-
Ooi S.K, Qiu C, Bernstein E, Li K, Jia D, Yang Z, Erdjument-Bromage H, Tempst P, Lin S.P, Allis C.D, et al. (2007). DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Nature, 448, 714-717.
-
(2007)
Nature
, vol.448
, pp. 714-717
-
-
Ooi, S.K.1
Qiu, C.2
Bernstein, E.3
Li, K.4
Jia, D.5
Yang, Z.6
Erdjument-Bromage, H.7
Tempst, P.8
Lin, S.P.9
Allis, C.D.10
-
9
-
-
34447098370
-
A chromatin landmark and transcription initiation at most promoters in human cells
-
Guenther M.G, Levine S.S, Boyer L.A, Jaenisch R, and Young R.A. (2007). A chromatin landmark and transcription initiation at most promoters in human cells. Cell, 130, 77-88.
-
(2007)
Cell
, vol.130
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
10
-
-
0037179716
-
Active genes are tri-methylated at K4 of histone H3
-
Santos-Rosa H, Schneider R, Bannister A.J, Sherriff J, Bernstein B.E, Emre N.C, Schreiber S.L, Mellor J, and Kouzarides T. (2002). Active genes are tri-methylated at K4 of histone H3. Nature, 419, 407-411.
-
(2002)
Nature
, vol.419
, pp. 407-411
-
-
Santos-Rosa, H.1
Schneider, R.2
Bannister, A.J.3
Sherriff, J.4
Bernstein, B.E.5
Emre, N.C.6
Schreiber, S.L.7
Mellor, J.8
Kouzarides, T.9
-
11
-
-
33646870495
-
Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions
-
Bracken A.P, Dietrich N, Pasini D, Hansen K.H, and Helin K. (2006). Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions. Genes Dev, 20, 1123-1136.
-
(2006)
Genes Dev
, vol.20
, pp. 1123-1136
-
-
Bracken, A.P.1
Dietrich, N.2
Pasini, D.3
Hansen, K.H.4
Helin, K.5
-
12
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein B.E, Mikkelsen T.S, Xie X, Kamal M, Huebert D.J, Cuff J, Fry B, Meissner A, Wernig M, Plath K, et al. (2006). A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell, 125, 315-326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
-
13
-
-
58049191558
-
Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation
-
Cui K, Zang C, Roh T.Y, Schones D.E, Childs R.W, Peng W, and Zhao K. (2009). Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell, 4, 80-93.
-
(2009)
Cell Stem Cell
, vol.4
, pp. 80-93
-
-
Cui, K.1
Zang, C.2
Roh, T.Y.3
Schones, D.E.4
Childs, R.W.5
Peng, W.6
Zhao, K.7
-
14
-
-
58149395035
-
Bivalent domains enforce transcriptional memory of DNA methylated genes in cancer cells
-
Rodriguez J, Munoz M, Vives L, Frangou C.G, Groudine M, and Peinado M.A. (2008). Bivalent domains enforce transcriptional memory of DNA methylated genes in cancer cells. Proc. Natl. Acad. Sci. U.S.A, 105, 19809-19814.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A
, vol.105
, pp. 19809-19814
-
-
Rodriguez, J.1
Munoz, M.2
Vives, L.3
Frangou, C.G.4
Groudine, M.5
Peinado, M.A.6
-
15
-
-
84878632825
-
Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues
-
Simmer F, Brinkman A.B, Assenov Y, Matarese F, Kaan A, Sabatino L, Villanueva A, Huertas D, Esteller M, Lengauer T, et al. (2012). Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues. Epigenetics, 7, 1355-1367.
-
(2012)
Epigenetics
, vol.7
, pp. 1355-1367
-
-
Simmer, F.1
Brinkman, A.B.2
Assenov, Y.3
Matarese, F.4
Kaan, A.5
Sabatino, L.6
Villanueva, A.7
Huertas, D.8
Esteller, M.9
Lengauer, T.10
-
16
-
-
80053217575
-
ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity
-
Young M.D, Willson T.A, Wakefield M.J, Trounson E, Hilton D.J, Blewitt M.E, Oshlack A, and Majewski I.J. (2011). ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity. Nucleic Acids Res, 39, 7415-7427.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 7415-7427
-
-
Young, M.D.1
Willson, T.A.2
Wakefield, M.J.3
Trounson, E.4
Hilton, D.J.5
Blewitt, M.E.6
Oshlack, A.7
Majewski, I.J.8
-
17
-
-
59949085939
-
H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome
-
Pauler F.M, Sloane M.A, Huang R, Regha K, Koerner M.V, Tamir I, Sommer A, Aszodi A, Jenuwein T, and Barlow D.P. (2009). H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome. Genome Res, 19, 221-233.
-
(2009)
Genome Res
, vol.19
, pp. 221-233
-
-
Pauler, F.M.1
Sloane, M.A.2
Huang, R.3
Regha, K.4
Koerner, M.V.5
Tamir, I.6
Sommer, A.7
Aszodi, A.8
Jenuwein, T.9
Barlow, D.P.10
-
18
-
-
34548434716
-
Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells
-
Pan G, Tian S, Nie J, Yang C, Ruotti V, Wei H, Jonsdottir G.A, Stewart R, and Thomson J.A. (2007). Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell, 1, 299-312.
-
(2007)
Cell Stem Cell
, vol.1
, pp. 299-312
-
-
Pan, G.1
Tian, S.2
Nie, J.3
Yang, C.4
Ruotti, V.5
Wei, H.6
Jonsdottir, G.A.7
Stewart, R.8
Thomson, J.A.9
-
19
-
-
33646882068
-
Polycomb complexes repress developmental regulators in murine embryonic stem cells
-
Boyer L.A, Plath K, Zeitlinger J, Brambrink T, Medeiros L.A, Lee T.I, Levine S.S, Wernig M, Tajonar A, Ray M.K, et al. (2006). Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature, 441, 349-353.
-
(2006)
Nature
, vol.441
, pp. 349-353
-
-
Boyer, L.A.1
Plath, K.2
Zeitlinger, J.3
Brambrink, T.4
Medeiros, L.A.5
Lee, T.I.6
Levine, S.S.7
Wernig, M.8
Tajonar, A.9
Ray, M.K.10
-
20
-
-
49649125042
-
Genome-scale DNA methylation maps of pluripotent and differentiated cells
-
Meissner A, Mikkelsen T.S, Gu H, Wernig M, Hanna J, Sivachenko A, Zhang X, Bernstein B.E, Nusbaum C, Jaffe D.B, et al. (2008). Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature, 454, 766-770.
-
(2008)
Nature
, vol.454
, pp. 766-770
-
-
Meissner, A.1
Mikkelsen, T.S.2
Gu, H.3
Wernig, M.4
Hanna, J.5
Sivachenko, A.6
Zhang, X.7
Bernstein, B.E.8
Nusbaum, C.9
Jaffe, D.B.10
-
21
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen T.S, Ku M, Jaffe D.B, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim T.K, Koche R.P, et al. (2007). Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature, 448, 553-560.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.K.9
Koche, R.P.10
-
22
-
-
84879260661
-
A double take on bivalent promoters
-
Voigt P, Tee W.W, and Reinberg D. (2013). A double take on bivalent promoters. Genes Dev, 27, 1318-1338.
-
(2013)
Genes Dev
, vol.27
, pp. 1318-1338
-
-
Voigt, P.1
Tee, W.W.2
Reinberg, D.3
-
23
-
-
78650684739
-
GC-rich sequence elements recruit PRC2 in mammalian ES cells
-
Mendenhall E.M, Koche R.P, Truong T, Zhou V.W, Issac B, Chi A.S, Ku M, and Bernstein B.E. (2010). GC-rich sequence elements recruit PRC2 in mammalian ES cells. PLoS Genet, 6, e1001244.
-
(2010)
PLoS Genet
, vol.6
, pp. e1001244
-
-
Mendenhall, E.M.1
Koche, R.P.2
Truong, T.3
Zhou, V.W.4
Issac, B.5
Chi, A.S.6
Ku, M.7
Bernstein, B.E.8
-
24
-
-
73149111929
-
A region of the human HOXD cluster that confers polycomb-group responsiveness
-
Woo C.J, Kharchenko P.V, Daheron L, Park P.J, and Kingston R.E. (2010). A region of the human HOXD cluster that confers polycomb-group responsiveness. Cell, 140, 99-110.
-
(2010)
Cell
, vol.140
, pp. 99-110
-
-
Woo, C.J.1
Kharchenko, P.V.2
Daheron, L.3
Park, P.J.4
Kingston, R.E.5
-
25
-
-
84857190178
-
An interspecies analysis reveals a key role for unmethylated CpG dinucleotides in vertebrate Polycomb complex recruitment
-
Lynch M.D, Smith A.J, De Gobbi M, Flenley M, Hughes J.R, Vernimmen D, Ayyub H, Sharpe J.A, Sloane-Stanley J.A, Sutherland L, et al. (2012). An interspecies analysis reveals a key role for unmethylated CpG dinucleotides in vertebrate Polycomb complex recruitment. EMBO J, 31, 317-329.
-
(2012)
EMBO J
, vol.31
, pp. 317-329
-
-
Lynch, M.D.1
Smith, A.J.2
De Gobbi, M.3
Flenley, M.4
Hughes, J.R.5
Vernimmen, D.6
Ayyub, H.7
Sharpe, J.A.8
Sloane-Stanley, J.A.9
Sutherland, L.10
-
26
-
-
66749152204
-
Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids
-
Iyer L.M, Tahiliani M, Rao A, and Aravind L. (2009). Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids. Cell Cycle, 8, 1698-1710.
-
(2009)
Cell Cycle
, vol.8
, pp. 1698-1710
-
-
Iyer, L.M.1
Tahiliani, M.2
Rao, A.3
Aravind, L.4
-
27
-
-
80052495940
-
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
-
He Y.F, Li B.Z, Li Z, Liu P, Wang Y, Tang Q, Ding J, Jia Y, Chen Z, Li L, et al. (2011). Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science, 333, 1303-1307.
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.F.1
Li, B.Z.2
Li, Z.3
Liu, P.4
Wang, Y.5
Tang, Q.6
Ding, J.7
Jia, Y.8
Chen, Z.9
Li, L.10
-
28
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
Ito S, Shen L, Dai Q, Wu S.C, Collins L.B, Swenberg J.A, He C, and Zhang Y. (2011). Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science, 333, 1300-1303.
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
Wu, S.C.4
Collins, L.B.5
Swenberg, J.A.6
He, C.7
Zhang, Y.8
-
29
-
-
84860749868
-
Tet family proteins and 5-hydroxymethylcytosine in development and disease
-
Tan L, and Shi Y.G. (2012). Tet family proteins and 5-hydroxymethylcytosine in development and disease. Development, 139, 1895-1902.
-
(2012)
Development
, vol.139
, pp. 1895-1902
-
-
Tan, L.1
Shi, Y.G.2
-
30
-
-
65449154892
-
Generation of transgene-free induced pluripotent mouse stem cells by the piggyBac transposon
-
Yusa K, Rad R, Takeda J, and Bradley A. (2009). Generation of transgene-free induced pluripotent mouse stem cells by the piggyBac transposon. Nat. Methods, 6, 363-369.
-
(2009)
Nat. Methods
, vol.6
, pp. 363-369
-
-
Yusa, K.1
Rad, R.2
Takeda, J.3
Bradley, A.4
-
31
-
-
64749083939
-
PiggyBac transposition reprograms fibroblasts to induced pluripotent stem cells
-
Woltjen K, Michael I.P, Mohseni P, Desai R, Mileikovsky M, Hamalainen R, Cowling R, Wang W, Liu P, Gertsenstein M, et al. (2009). piggyBac transposition reprograms fibroblasts to induced pluripotent stem cells. Nature, 458, 766-770.
-
(2009)
Nature
, vol.458
, pp. 766-770
-
-
Woltjen, K.1
Michael, I.P.2
Mohseni, P.3
Desai, R.4
Mileikovsky, M.5
Hamalainen, R.6
Cowling, R.7
Wang, W.8
Liu, P.9
Gertsenstein, M.10
-
32
-
-
78649825211
-
TET1 is a DNA-binding protein that modulates DNA methylation and gene transcription via hydroxylation of 5-methylcytosine
-
Zhang H, Zhang X, Clark E, Mulcahey M, Huang S, and Shi Y.G. (2010). TET1 is a DNA-binding protein that modulates DNA methylation and gene transcription via hydroxylation of 5-methylcytosine. Cell Res, 20, 1390-1393.
-
(2010)
Cell Res
, vol.20
, pp. 1390-1393
-
-
Zhang, H.1
Zhang, X.2
Clark, E.3
Mulcahey, M.4
Huang, S.5
Shi, Y.G.6
-
33
-
-
84876580885
-
Genome-wide comparison of DNA hydroxymethylation in mouse embryonic stem cells and neural progenitor cells by a new comparative hMeDIP-seq method
-
Tan L, Xiong L, Xu W, Wu F, Huang N, Xu Y, Kong L, Zheng L, Schwartz L, Shi Y, et al. (2013). Genome-wide comparison of DNA hydroxymethylation in mouse embryonic stem cells and neural progenitor cells by a new comparative hMeDIP-seq method. Nucleic Acids Res, 41, e84.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. e84
-
-
Tan, L.1
Xiong, L.2
Xu, W.3
Wu, F.4
Huang, N.5
Xu, Y.6
Kong, L.7
Zheng, L.8
Schwartz, L.9
Shi, Y.10
-
34
-
-
79955948324
-
Genome-wide regulation of 5hmC 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells
-
Xu Y, Wu F, Tan L, Kong L, Xiong L, Deng J, Barbera A.J, Zheng L, Zhang H, Huang S, et al. (2011). Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells. Mol. Cell, 42, 451-464.
-
(2011)
Mol. Cell
, vol.42
, pp. 451-464
-
-
Xu, Y.1
Wu, F.2
Tan, L.3
Kong, L.4
Xiong, L.5
Deng, J.6
Barbera, A.J.7
Zheng, L.8
Zhang, H.9
Huang, S.10
-
35
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
Huang da W, Sherman B.T, and Lempicki R.A. (2009). Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res, 37, 1-13.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1-13
-
-
Huang Da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
36
-
-
78650058320
-
Evaluation of affinity-based genome-wide DNA methylation data: Effects of CpG density, amplification bias, and copy number variation
-
Robinson M.D, Stirzaker C, Statham A.L, Coolen M.W, Song J.Z, Nair S.S, Strbenac D, Speed T.P, and Clark S.J. (2010). Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation. Genome Res, 20, 1719-1729.
-
(2010)
Genome Res
, vol.20
, pp. 1719-1729
-
-
Robinson, M.D.1
Stirzaker, C.2
Statham, A.L.3
Coolen, M.W.4
Song, J.Z.5
Nair, S.S.6
Strbenac, D.7
Speed, T.P.8
Clark, S.J.9
-
37
-
-
27644548948
-
Quantitative high-Throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry
-
Ehrich M, Nelson M.R, Stanssens P, Zabeau M, Liloglou T, Xinarianos G, Cantor C.R, Field J.K, and van den Boom D. (2005). Quantitative high-Throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry. Proc. Natl. Acad. Sci. U.S.A, 102, 15785-15790.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 15785-15790
-
-
Ehrich, M.1
Nelson, M.R.2
Stanssens, P.3
Zabeau, M.4
Liloglou, T.5
Xinarianos, G.6
Cantor, C.R.7
Field, J.K.8
Van Den Boom, D.9
-
38
-
-
0034458963
-
Genomic targeting of methylated DNA: Influence of methylation on transcription, replication, chromatin structure, and histone acetylation
-
Schubeler D, Lorincz M.C, Cimbora D.M, Telling A, Feng Y.Q, Bouhassira E.E, and Groudine M. (2000). Genomic targeting of methylated DNA: influence of methylation on transcription, replication, chromatin structure, and histone acetylation. Mol. Cell. Biol, 20, 9103-9112.
-
(2000)
Mol. Cell. Biol
, vol.20
, pp. 9103-9112
-
-
Schubeler, D.1
Lorincz, M.C.2
Cimbora, D.M.3
Telling, A.4
Feng, Y.Q.5
Bouhassira, E.E.6
Groudine, M.7
-
39
-
-
84864752375
-
Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells
-
Clouaire T, Webb S, Skene P, Illingworth R, Kerr A, Andrews R, Lee J.H, Skalnik D, and Bird A. (2012). Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells. Genes Dev, 26, 1714-1728.
-
(2012)
Genes Dev
, vol.26
, pp. 1714-1728
-
-
Clouaire, T.1
Webb, S.2
Skene, P.3
Illingworth, R.4
Kerr, A.5
Andrews, R.6
Lee, J.H.7
Skalnik, D.8
Bird, A.9
-
40
-
-
84875333893
-
Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes
-
Reddington J.P, Perricone S.M, Nestor C.E, Reichmann J, Youngson N.A, Suzuki M, Reinhardt D, Dunican D.S, Prendergast J.G, Mjoseng H, et al. (2013). Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes. Genome Biol, 14, R25.
-
(2013)
Genome Biol
, vol.14
, pp. R25
-
-
Reddington, J.P.1
Perricone, S.M.2
Nestor, C.E.3
Reichmann, J.4
Youngson, N.A.5
Suzuki, M.6
Reinhardt, D.7
Dunican, D.S.8
Prendergast, J.G.9
Mjoseng, H.10
-
41
-
-
84865292901
-
Dense chromatin activates Polycomb repressive complex 2 to regulate H3 lysine 27 methylation
-
Yuan W, Wu T, Fu H, Dai C, Wu H, Liu N, Li X, Xu M, Zhang Z, Niu T, et al. (2012). Dense chromatin activates Polycomb repressive complex 2 to regulate H3 lysine 27 methylation. Science, 337, 971-975.
-
(2012)
Science
, vol.337
, pp. 971-975
-
-
Yuan, W.1
Wu, T.2
Fu, H.3
Dai, C.4
Wu, H.5
Liu, N.6
Li, X.7
Xu, M.8
Zhang, Z.9
Niu, T.10
-
42
-
-
80052555414
-
Dynamics of bivalent chromatin domains upon drug induced reactivation and resilencing in cancer cells
-
Mayor R, Munoz M, Coolen M.W, Custodio J, Esteller M, Clark S.J, and Peinado M.A. (2011). Dynamics of bivalent chromatin domains upon drug induced reactivation and resilencing in cancer cells. Epigenetics, 6, 1138-1148.
-
(2011)
Epigenetics
, vol.6
, pp. 1138-1148
-
-
Mayor, R.1
Munoz, M.2
Coolen, M.W.3
Custodio, J.4
Esteller, M.5
Clark, S.J.6
Peinado, M.A.7
-
43
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani M, Koh K.P, Shen Y, Pastor W.A, Bandukwala H, Brudno Y, Agarwal S, Iyer L.M, Liu D.R, Aravind L, et al. (2009). Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science, 324, 930-935.
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
-
44
-
-
38649126918
-
Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation
-
Fouse S.D, Shen Y, Pellegrini M, Cole S, Meissner A, Van Neste L, Jaenisch R, and Fan G. (2008). Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation. Cell Stem Cell, 2, 160-169.
-
(2008)
Cell Stem Cell
, vol.2
, pp. 160-169
-
-
Fouse, S.D.1
Shen, Y.2
Pellegrini, M.3
Cole, S.4
Meissner, A.5
Van Neste, L.6
Jaenisch, R.7
Fan, G.8
-
45
-
-
84555189745
-
DNA methylation: TET proteins-guardians of CpG islands?
-
Williams K, Christensen J, and Helin K. (2012). DNA methylation: TET proteins-guardians of CpG islands? EMBO Rep, 13, 28-35.
-
(2012)
EMBO Rep
, vol.13
, pp. 28-35
-
-
Williams, K.1
Christensen, J.2
Helin, K.3
-
46
-
-
84954540490
-
Altering TET dioxygenase levels within physiological range affects DNA methylation dynamics of HEK293 cells
-
Grosser C, Wagner N, Grothaus K, and Horsthemke B. (2015). Altering TET dioxygenase levels within physiological range affects DNA methylation dynamics of HEK293 cells. Epigenetics, 10, 819-833.
-
(2015)
Epigenetics
, vol.10
, pp. 819-833
-
-
Grosser, C.1
Wagner, N.2
Grothaus, K.3
Horsthemke, B.4
-
47
-
-
84903182472
-
TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells
-
Jin C, Lu Y, Jelinek J, Liang S, Estecio M.R, Barton M.C, and Issa J.P. (2014). TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells. Nucleic Acids Res, 42, 6956-6971.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 6956-6971
-
-
Jin, C.1
Lu, Y.2
Jelinek, J.3
Liang, S.4
Estecio, M.R.5
Barton, M.C.6
Issa, J.P.7
-
48
-
-
84875218124
-
Tet2 and tet3 regulate glcnacylation and h3k4 methylation through ogt and set1/compass
-
Deplus R, Delatte B, Schwinn M.K, Defrance M, Mendez J, Murphy N, Dawson M.A, Volkmar M, Putmans P, Calonne E, et al. (2013). TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS. EMBO J, 32, 645-655.
-
(2013)
EMBO J
, vol.32
, pp. 645-655
-
-
Deplus, R.1
Delatte, B.2
Schwinn, M.K.3
Defrance, M.4
Mendez, J.5
Murphy, N.6
Dawson, M.A.7
Volkmar, M.8
Putmans, P.9
Calonne, E.10
-
49
-
-
84897989106
-
Tet and TDG mediate DNA demethylation essential for mesenchymal-To-epithelial transition in somatic cell reprogramming
-
Hu X, Zhang L, Mao S.Q, Li Z, Chen J, Zhang R.R, Wu H.P, Gao J, Guo F, Liu W, et al. (2014). Tet and TDG mediate DNA demethylation essential for mesenchymal-To-epithelial transition in somatic cell reprogramming. Cell Stem Cell, 14, 512-522.
-
(2014)
Cell Stem Cell
, vol.14
, pp. 512-522
-
-
Hu, X.1
Zhang, L.2
Mao, S.Q.3
Li, Z.4
Chen, J.5
Zhang, R.R.6
Wu, H.P.7
Gao, J.8
Guo, F.9
Liu, W.10
-
50
-
-
84898482006
-
Loss of Tet enzymes compromises proper differentiation of embryonic stem cells
-
Dawlaty M.M, Breiling A, Le T, Barrasa M.I, Raddatz G, Gao Q, Powell B.E, Cheng A.W, Faull K.F, Lyko F, et al. (2014). Loss of Tet enzymes compromises proper differentiation of embryonic stem cells. Dev. Cell, 29, 102-111.
-
(2014)
Dev. Cell
, vol.29
, pp. 102-111
-
-
Dawlaty, M.M.1
Breiling, A.2
Le Barrasa T, M.I.3
Raddatz, G.4
Gao, Q.5
Powell, B.E.6
Cheng, A.W.7
Faull, K.F.8
Lyko, F.9
-
51
-
-
0037068353
-
DNA methylation in cancer: Too much, but also too little
-
Ehrlich M. (2002). DNA methylation in cancer: too much, but also too little. Oncogene, 21, 5400-5413.
-
(2002)
Oncogene
, vol.21
, pp. 5400-5413
-
-
Ehrlich, M.1
-
52
-
-
84860577189
-
A DNA hypermethylation module for the stem/progenitor cell signature of cancer
-
Easwaran H, Johnstone S.E, Van Neste L, Ohm J, Mosbruger T, Wang Q, Aryee M.J, Joyce P, Ahuja N, Weisenberger D, et al. (2012). A DNA hypermethylation module for the stem/progenitor cell signature of cancer. Genome Res, 22, 837-849.
-
(2012)
Genome Res
, vol.22
, pp. 837-849
-
-
Easwaran, H.1
Johnstone, S.E.2
Van Neste, L.3
Ohm, J.4
Mosbruger, T.5
Wang, Q.6
Aryee, M.J.7
Joyce, P.8
Ahuja, N.9
Weisenberger, D.10
-
53
-
-
84873411803
-
Tumor development is associated with decrease of TET gene expression and 5-methylcytosine hydroxylation
-
Yang H, Liu Y, Bai F, Zhang J.Y, Ma S.H, Liu J, Xu Z.D, Zhu H.G, Ling Z.Q, Ye D, et al. (2013). Tumor development is associated with decrease of TET gene expression and 5-methylcytosine hydroxylation. Oncogene, 32, 663-669.
-
(2013)
Oncogene
, vol.32
, pp. 663-669
-
-
Yang, H.1
Liu, Y.2
Bai, F.3
Zhang, J.Y.4
Ma, S.H.5
Liu, J.6
Xu, Z.D.7
Zhu, H.G.8
Ling, Z.Q.9
Ye, D.10
-
54
-
-
84864129535
-
Distribution of 5-hydroxymethylcytosine in different human tissues
-
Li W, and Liu M. (2011). Distribution of 5-hydroxymethylcytosine in different human tissues. J. Nucleic Acids, 870726.
-
(2011)
J. Nucleic Acids
, pp. 870726
-
-
Li, W.1
Liu, M.2
-
55
-
-
84866419591
-
Loss of 5-hydroxymethylcytosine is an epigenetic hallmark of melanoma
-
Lian C.G, Xu Y, Ceol C, Wu F, Larson A, Dresser K, Xu W, Tan L, Hu Y, Zhan Q, et al. (2012). Loss of 5-hydroxymethylcytosine is an epigenetic hallmark of melanoma. Cell, 150, 1135-1146.
-
(2012)
Cell
, vol.150
, pp. 1135-1146
-
-
Lian, C.G.1
Xu, Y.2
Ceol, C.3
Wu, F.4
Larson, A.5
Dresser, K.6
Xu, W.7
Tan, L.8
Hu, Y.9
Zhan, Q.10
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