-
1
-
-
22844457491
-
DNA methylation and human disease
-
Robertson, K.D. (2005) DNA methylation and human disease. Nat. Rev. Genet., 6, 597-610.
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 597-610
-
-
Robertson, K.D.1
-
2
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
Bird, A. (2002) DNA methylation patterns and epigenetic memory. Genes Dev., 16, 6-21.
-
(2002)
Genes Dev.
, vol.16
, pp. 6-21
-
-
Bird, A.1
-
3
-
-
0034109336
-
Dynamics of DNA methylation pattern
-
Hsieh, C.L. (2000) Dynamics of DNA methylation pattern. Curr. Opin. Genet. Dev., 10, 224-228.
-
(2000)
Curr. Opin. Genet. Dev.
, vol.10
, pp. 224-228
-
-
Hsieh, C.L.1
-
4
-
-
84875129831
-
DNA methylation dynamics in health and disease
-
Bergman, Y. and Cedar, H. (2013) DNA methylation dynamics in health and disease. Nat. Struct. Mol. Biol., 20, 274-281.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 274-281
-
-
Bergman, Y.1
Cedar, H.2
-
5
-
-
0031860739
-
Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases
-
Okano, M., Xie, S. and Li, E. (1998) Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases. Nat. Genet., 19, 219-220.
-
(1998)
Nat. Genet.
, vol.19
, pp. 219-220
-
-
Okano, M.1
Xie, S.2
Li, E.3
-
6
-
-
0033615717
-
DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
-
Okano, M., Bell, D.W., Haber, D.A. and Li, E. (1999) DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell, 99, 247-257.
-
(1999)
Cell
, vol.99
, pp. 247-257
-
-
Okano, M.1
Bell, D.W.2
Haber, D.A.3
Li, E.4
-
7
-
-
0023701018
-
Cloning and sequencing of a cDNA encoding DNA methyltransferase of mouse cells. The carboxyl-terminal domain of the mammalian enzymes is related to bacterial restriction methyltransferases
-
Bestor, T., Laudano, A., Mattaliano, R. and Ingram, V. (1988) Cloning and sequencing of a cDNA encoding DNA methyltransferase of mouse cells. The carboxyl-terminal domain of the mammalian enzymes is related to bacterial restriction methyltransferases. J. Mol. Biol., 203, 971-983.
-
(1988)
J. Mol. Biol.
, vol.203
, pp. 971-983
-
-
Bestor, T.1
Laudano, A.2
Mattaliano, R.3
Ingram, V.4
-
8
-
-
9144256125
-
The Dnmt1 DNA-(cytosine-C5)-methyltransferase methylates DNA processively with high preference for hemimethylated target sites
-
Hermann, A., Goyal, R. and Jeltsch, A. (2004) The Dnmt1 DNA-(cytosine-C5)-methyltransferase methylates DNA processively with high preference for hemimethylated target sites. J. Biol. Chem., 279, 48350-48359.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 48350-48359
-
-
Hermann, A.1
Goyal, R.2
Jeltsch, A.3
-
9
-
-
77956095231
-
Active DNA demethylation: Many roads lead to Rome.Nat
-
Wu, S.C. and Zhang, Y. (2010) Active DNA demethylation: Many roads lead to Rome.Nat. Rev. Mol. Cell Biol., 11, 607-620.
-
(2010)
Rev. Mol. Cell Biol.
, vol.11
, pp. 607-620
-
-
Wu, S.C.1
Zhang, Y.2
-
10
-
-
45449114804
-
The colorful history of active DNA demethylation
-
Ooi, S.K. and Bestor, T.H. (2008) The colorful history of active DNA demethylation. Cell, 133, 1145-1148.
-
(2008)
Cell
, vol.133
, pp. 1145-1148
-
-
Ooi, S.K.1
Bestor, T.H.2
-
11
-
-
80054097425
-
Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos
-
Inoue, A. and Zhang, Y. (2011) Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos. Science, 334, 194.
-
(2011)
Science
, vol.334
, pp. 194
-
-
Inoue, A.1
Zhang, Y.2
-
12
-
-
82655187105
-
Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development
-
Inoue, A., Shen, L., Dai, Q., He, C. and Zhang, Y. (2011) Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development. Cell Res., 21, 1670-1676.
-
(2011)
Cell Res.
, vol.21
, pp. 1670-1676
-
-
Inoue, A.1
Shen, L.2
Dai, Q.3
He, C.4
Zhang, Y.5
-
13
-
-
33847055935
-
Endogenous cytosine damage products alter the site selectivity of human DNA maintenance methyltransferase DNMT1
-
Valinluck, V. and Sowers, L.C. (2007) Endogenous cytosine damage products alter the site selectivity of human DNA maintenance methyltransferase DNMT1. Cancer Res., 67, 946-950.
-
(2007)
Cancer Res.
, vol.67
, pp. 946-950
-
-
Valinluck, V.1
Sowers, L.C.2
-
14
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
Ito, S., Shen, L., Dai, Q., Wu, S.C., Collins, L.B., Swenberg, J.A., He, C. and Zhang, Y. (2011) Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science, 333, 1300-1303.
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
Wu, S.C.4
Collins, L.B.5
Swenberg, J.A.6
He, C.7
Zhang, Y.8
-
15
-
-
80052495940
-
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
-
He, Y.F., Li, B.Z., Li, Z., Liu, P., Wang, Y., Tang, Q., Ding, J., Jia, Y., Chen, Z., Li, L. et al. (2011) Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science, 333, 1303-1307.
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.F.1
Li, B.Z.2
Li, Z.3
Liu, P.4
Wang, Y.5
Tang, Q.6
Ding, J.7
Jia, Y.8
Chen, Z.9
Li, L.10
-
16
-
-
80053917872
-
Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: Potential implications for active demethylation of CpG sites
-
Maiti, A. and Drohat, A.C. (2011) Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: Potential implications for active demethylation of CpG sites. J. Biol. Chem., 286, 35334-35338.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 35334-35338
-
-
Maiti, A.1
Drohat, A.C.2
-
17
-
-
79955538247
-
Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain
-
Guo, J.U., Su, Y., Zhong, C., Ming, G.L. and Song, H. (2011) Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain. Cell, 145, 423-434.
-
(2011)
Cell
, vol.145
, pp. 423-434
-
-
Guo, J.U.1
Su, Y.2
Zhong, C.3
Ming, G.L.4
Song, H.5
-
18
-
-
82955207588
-
Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation
-
Wu, H. and Zhang, Y. (2011) Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation. Genes Dev., 25, 2436-2452.
-
(2011)
Genes Dev.
, vol.25
, pp. 2436-2452
-
-
Wu, H.1
Zhang, Y.2
-
19
-
-
77956189495
-
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
-
Ito, S., D'Alessio, A.C., Taranova, O.V., Hong, K., Sowers, L.C. and Zhang, Y. (2010) Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature, 466, 1129-1133.
-
(2010)
Nature
, vol.466
, pp. 1129-1133
-
-
Ito, S.1
D'Alessio, A.C.2
Taranova, O.V.3
Hong, K.4
Sowers, L.C.5
Zhang, Y.6
-
20
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani, M., Koh, K.P., Shen, Y., Pastor, W.A., Bandukwala, H., Brudno, Y., Agarwal, S., Iyer, L.M., Liu, D.R., Aravind, L. et al. (2009) Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science, 324, 930-935.
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
-
21
-
-
79956292024
-
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells
-
Wu, H., D'Alessio, A.C., Ito, S., Xia, K., Wang, Z., Cui, K., Zhao, K., Sun, Y.E. and Zhang, Y. (2011) Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells. Nature, 473, 389-393.
-
(2011)
Nature
, vol.473
, pp. 389-393
-
-
Wu, H.1
D'Alessio, A.C.2
Ito, S.3
Xia, K.4
Wang, Z.5
Cui, K.6
Zhao, K.7
Sun, Y.E.8
Zhang, Y.9
-
22
-
-
79955948324
-
Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells
-
Xu, Y., Wu, F., Tan, L., Kong, L., Xiong, L., Deng, J., Barbera, A.J., Zheng, L., Zhang, H., Huang, S. et al. (2011) Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells. Mol. Cell, 42, 451-464.
-
(2011)
Mol. Cell
, vol.42
, pp. 451-464
-
-
Xu, Y.1
Wu, F.2
Tan, L.3
Kong, L.4
Xiong, L.5
Deng, J.6
Barbera, A.J.7
Zheng, L.8
Zhang, H.9
Huang, S.10
-
23
-
-
79956323623
-
Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
-
Ficz, G., Branco, M.R., Seisenberger, S., Santos, F., Krueger, F., Hore, T.A., Marques, C.J., Andrews, S. and Reik, W. (2011) Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation. Nature, 473, 398-402.
-
(2011)
Nature
, vol.473
, pp. 398-402
-
-
Ficz, G.1
Branco, M.R.2
Seisenberger, S.3
Santos, F.4
Krueger, F.5
Hore, T.A.6
Marques, C.J.7
Andrews, S.8
Reik, W.9
-
24
-
-
79551587102
-
Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells
-
Koh, K.P., Yabuuchi, A., Rao, S., Huang, Y., Cunniff, K., Nardone, J., Laiho, A., Tahiliani, M., Sommer, C.A., Mostoslavsky, G. et al. (2011) Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells. Cell Stem Cell, 8, 200-213.
-
(2011)
Cell Stem Cell
, vol.8
, pp. 200-213
-
-
Koh, K.P.1
Yabuuchi, A.2
Rao, S.3
Huang, Y.4
Cunniff, K.5
Nardone, J.6
Laiho, A.7
Tahiliani, M.8
Sommer, C.A.9
Mostoslavsky, G.10
-
25
-
-
79956302047
-
TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity
-
Williams, K., Christensen, J., Pedersen, M.T., Johansen, J.V., Cloos, P.A., Rappsilber, J. and Helin, K. (2011) TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity. Nature, 473, 343-348.
-
(2011)
Nature
, vol.473
, pp. 343-348
-
-
Williams, K.1
Christensen, J.2
Pedersen, M.T.3
Johansen, J.V.4
Cloos, P.A.5
Rappsilber, J.6
Helin, K.7
-
26
-
-
84875949201
-
Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells
-
Vincent, J.J., Huang, Y., Chen, P.Y., Feng, S., Calvopina, J.H., Nee, K., Lee, S.A., Le, T., Yoon, A.J., Faull, K. et al. (2013) Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells. Cell Stem Cell, 12, 470-478.
-
(2013)
Cell Stem Cell
, vol.12
, pp. 470-478
-
-
Vincent, J.J.1
Huang, Y.2
Chen, P.Y.3
Feng, S.4
Calvopina, J.H.5
Nee, K.6
Lee Le, A.S.T.7
Yoon, A.J.8
Faull, K.9
-
27
-
-
84872770694
-
Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine
-
Hackett, J.A., Sengupta, R., Zylicz, J.J., Murakami, K., Lee, C., Down, T.A. and Surani, M.A. (2013) Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine. Science, 339, 448-452.
-
(2013)
Science
, vol.339
, pp. 448-452
-
-
Hackett, J.A.1
Sengupta, R.2
Zylicz, J.J.3
Murakami, K.4
Lee, C.5
Down, T.A.6
Surani, M.A.7
-
28
-
-
84871438065
-
Tet1 controls meiosis by regulating meiotic gene expression
-
Yamaguchi, S., Hong, K., Liu, R., Shen, L., Inoue, A., Diep, D., Zhang, K. and Zhang, Y. (2012) Tet1 controls meiosis by regulating meiotic gene expression. Nature, 492, 443-447.
-
(2012)
Nature
, vol.492
, pp. 443-447
-
-
Yamaguchi, S.1
Hong, K.2
Liu, R.3
Shen, L.4
Inoue, A.5
Diep, D.6
Zhang, K.7
Zhang, Y.8
-
29
-
-
84875783959
-
Different roles for Tet1 and Tet2 proteins in reprogramming-mediated erasure of imprints induced by EGC fusion
-
Piccolo, F.M., Bagci, H., Brown, K.E., Landeira, D., Soza-Ried, J., Feytout, A., Mooijman, D., Hajkova, P., Leitch, H.G., Tada, T. et al. (2013) Different roles for Tet1 and Tet2 proteins in reprogramming-mediated erasure of imprints induced by EGC fusion. Mol. Cell, 49, 1023-1033.
-
(2013)
Mol. Cell
, vol.49
, pp. 1023-1033
-
-
Piccolo, F.M.1
Bagci, H.2
Brown, K.E.3
Landeira, D.4
Soza-Ried, J.5
Feytout, A.6
Mooijman, D.7
Hajkova, P.8
Leitch, H.G.9
Tada, T.10
-
30
-
-
84875923762
-
Replacement of Oct4 by Tet1 during iPSC induction reveals an important role of DNA methylation and hydroxymethylation in reprogramming
-
Gao, Y., Chen, J., Li, K., Wu, T., Huang, B., Liu, W., Kou, X., Zhang, Y., Huang, H., Jiang, Y. et al. (2013) Replacement of Oct4 by Tet1 during iPSC induction reveals an important role of DNA methylation and hydroxymethylation in reprogramming. Cell Stem Cell, 12, 453-469.
-
(2013)
Cell Stem Cell
, vol.12
, pp. 453-469
-
-
Gao, Y.1
Chen, J.2
Li, K.3
Wu, T.4
Huang, B.5
Liu, W.6
Kou, X.7
Zhang, Y.8
Huang, H.9
Jiang, Y.10
-
31
-
-
0037350661
-
TET1, a member of a novel protein family, is fused to MLL in acute myeloid leukemia containing the t(10;11)(q22;q23)
-
Lorsbach, R.B., Moore, J., Mathew, S., Raimondi, S.C., Mukatira, S.T. and Downing, J.R. (2003) TET1, a member of a novel protein family, is fused to MLL in acute myeloid leukemia containing the t(10;11)(q22;q23). Leukemia, 17, 637-641.
-
(2003)
Leukemia
, vol.17
, pp. 637-641
-
-
Lorsbach, R.B.1
Moore, J.2
Mathew, S.3
Raimondi, S.C.4
Mukatira, S.T.5
Downing, J.R.6
-
32
-
-
78649825211
-
TET1 is a DNA-binding protein that modulates DNA methylation and gene transcription via hydroxylation of 5-methylcytosine
-
Zhang, H., Zhang, X., Clark, E., Mulcahey, M., Huang, S. and Shi, Y.G. (2010) TET1 is a DNA-binding protein that modulates DNA methylation and gene transcription via hydroxylation of 5-methylcytosine. Cell Res., 20, 1390-1393.
-
(2010)
Cell Res.
, vol.20
, pp. 1390-1393
-
-
Zhang, H.1
Zhang, X.2
Clark, E.3
Mulcahey, M.4
Huang, S.5
Shi, Y.G.6
-
33
-
-
51649122312
-
Aberrant CpG island methylation in acute myeloid leukemia is accentuated at relapse
-
Kroeger, H., Jelinek, J., Estecio, M.R., He, R., Kondo, K., Chung, W., Zhang, L., Shen, L., Kantarjian, H.M., Bueso-Ramos, C.E. et al. (2008) Aberrant CpG island methylation in acute myeloid leukemia is accentuated at relapse. Blood, 112, 1366-1373.
-
(2008)
Blood
, vol.112
, pp. 1366-1373
-
-
Kroeger, H.1
Jelinek, J.2
Estecio, M.R.3
He, R.4
Kondo, K.5
Chung, W.6
Zhang, L.7
Shen, L.8
Kantarjian, H.M.9
Bueso-Ramos, C.E.10
-
34
-
-
0038678777
-
Sensitive and quantitative universal Pyrosequencing methylation analysis of CpG sites
-
Colella, S., Shen, L., Baggerly, K.A., Issa, J.P. and Krahe, R. (2003) Sensitive and quantitative universal Pyrosequencing methylation analysis of CpG sites. Biotechniques, 35, 146-150.
-
(2003)
Biotechniques
, vol.35
, pp. 146-150
-
-
Colella, S.1
Shen, L.2
Baggerly, K.A.3
Issa, J.P.4
Krahe, R.5
-
35
-
-
84870733829
-
Conserved DNA methylation patterns in healthy blood cells and extensive changes in leukemia measured by a new quantitative technique
-
Jelinek, J., Liang, S., Lu, Y., He, R., Ramagli, L.S., Shpall, E.J., Estecio, M.R. and Issa, J.P. (2012) Conserved DNA methylation patterns in healthy blood cells and extensive changes in leukemia measured by a new quantitative technique. Epigenetics, 7, 1368-1378.
-
(2012)
Epigenetics
, vol.7
, pp. 1368-1378
-
-
Jelinek, J.1
Liang, S.2
Lu, Y.3
He, R.4
Ramagli, L.S.5
Shpall, E.J.6
Estecio, M.R.7
Issa, J.P.8
-
36
-
-
77952857912
-
A signal-noise model for significance analysis of ChIP-seq with negative control
-
Xu, H., Handoko, L., Wei, X., Ye, C., Sheng, J., Wei, C.L., Lin, F. and Sung, W.K. (2010) A signal-noise model for significance analysis of ChIP-seq with negative control. Bioinformatics, 26, 1199-1204.
-
(2010)
Bioinformatics
, vol.26
, pp. 1199-1204
-
-
Xu, H.1
Handoko, L.2
Wei, X.3
Ye, C.4
Sheng, J.5
Wei, C.L.6
Lin, F.7
Sung, W.K.8
-
37
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim, D., Pertea, G., Trapnell, C., Pimentel, H., Kelley, R. and Salzberg, S.L. (2013) TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol., 14, R36.
-
(2013)
Genome Biol.
, vol.14
-
-
Kim, D.1
Pertea, G.2
Trapnell, C.3
Pimentel, H.4
Kelley, R.5
Salzberg, S.L.6
-
38
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M.D., McCarthy, D.J. and Smyth, G.K. (2010) edgeR: A Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26, 139-140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
39
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S. and Huber, W. (2010) Differential expression analysis for sequence count data. Genome Biol., 11, R106.
-
(2010)
Genome Biol.
, vol.11
-
-
Anders, S.1
Huber, W.2
-
40
-
-
77749277177
-
The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing
-
Huang, Y., Pastor, W.A., Shen, Y., Tahiliani, M., Liu, D.R. and Rao, A. (2010) The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing. PLoS One, 5, e8888.
-
(2010)
PLoS One
, vol.5
-
-
Huang, Y.1
Pastor, W.A.2
Shen, Y.3
Tahiliani, M.4
Liu, D.R.5
Rao, A.6
-
41
-
-
84861221693
-
Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution
-
Booth, M.J., Branco, M.R., Ficz, G., Oxley, D., Krueger, F., Reik, W. and Balasubramanian, S. (2012) Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution. Science, 336, 934-937.
-
(2012)
Science
, vol.336
, pp. 934-937
-
-
Booth, M.J.1
Branco, M.R.2
Ficz, G.3
Oxley, D.4
Krueger, F.5
Reik, W.6
Balasubramanian, S.7
-
42
-
-
79954457998
-
Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells
-
Wu, H., D'Alessio, A.C., Ito, S., Wang, Z., Cui, K., Zhao, K., Sun, Y.E. and Zhang, Y. (2011) Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells. Genes Dev., 25, 679-684.
-
(2011)
Genes Dev.
, vol.25
, pp. 679-684
-
-
Wu, H.1
D'Alessio, A.C.2
Ito, S.3
Wang, Z.4
Cui, K.5
Zhao, K.6
Sun, Y.E.7
Zhang, Y.8
-
43
-
-
84877065903
-
Tet1 is required for Rb phosphorylation during G1/S phase transition
-
Huang, S., Zhu, Z., Wang, Y., Xu, L., Chen, X., Xu, Q., Zhang, Q., Zhao, X., Yu, Y. and Wu, D. (2013) Tet1 is required for Rb phosphorylation during G1/S phase transition. Biochem. Biophys. Res. Commun., 434, 241-244.
-
(2013)
Biochem. Biophys. Res. Commun.
, vol.434
, pp. 241-244
-
-
Huang, S.1
Zhu, Z.2
Wang, Y.3
Xu, L.4
Chen, X.5
Xu, Q.6
Zhang, Q.7
Zhao, X.8
Yu, Y.9
Wu, D.10
-
44
-
-
85047695221
-
Hypermethylation trigger of the glutathione-S-transferase gene (GSTP1) in prostate cancer cells
-
Song, J.Z., Stirzaker, C., Harrison, J., Melki, J.R. and Clark, S.J. (2002) Hypermethylation trigger of the glutathione-S-transferase gene (GSTP1) in prostate cancer cells. Oncogene, 21, 1048-1061.
-
(2002)
Oncogene
, vol.21
, pp. 1048-1061
-
-
Song, J.Z.1
Stirzaker, C.2
Harrison, J.3
Melki, J.R.4
Clark, S.J.5
-
45
-
-
0037068351
-
Gene silencing in mammalian cells and the spread of DNA methylation
-
Turker, M.S. (2002) Gene silencing in mammalian cells and the spread of DNA methylation. Oncogene, 21, 5388-5393.
-
(2002)
Oncogene
, vol.21
, pp. 5388-5393
-
-
Turker, M.S.1
-
46
-
-
84863986133
-
Functions of DNA methylation: Islands, start sites, gene bodies and beyond
-
Jones, P.A. (2012) Functions of DNA methylation: Islands, start sites, gene bodies and beyond. Nat. Rev. Genet., 13, 484-492.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 484-492
-
-
Jones, P.A.1
-
47
-
-
0022540321
-
CpG-rich islands and the function of DNA methylation
-
Bird, A.P. (1986) CpG-rich islands and the function of DNA methylation. Nature, 321, 209-213.
-
(1986)
Nature
, vol.321
, pp. 209-213
-
-
Bird, A.P.1
-
48
-
-
79961139741
-
Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development
-
Dawlaty, M.M., Ganz, K., Powell, B.E., Hu, Y.C., Markoulaki, S., Cheng, A.W., Gao, Q., Kim, J., Choi, S.W., Page, D.C. et al. (2011) Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development. Cell Stem Cell, 9, 166-175.
-
(2011)
Cell Stem Cell
, vol.9
, pp. 166-175
-
-
Dawlaty, M.M.1
Ganz, K.2
Powell, B.E.3
Hu, Y.C.4
Markoulaki, S.5
Cheng, A.W.6
Gao, Q.7
Kim, J.8
Choi, S.W.9
Page, D.C.10
-
49
-
-
84873707539
-
Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development
-
Dawlaty, M.M., Breiling, A., Le, T., Raddatz, G., Barrasa, M.I., Cheng, A.W., Gao, Q., Powell, B.E., Li, Z., Xu, M. et al. (2013) Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development. Dev. Cell, 24, 310-323.
-
(2013)
Dev. Cell
, vol.24
, pp. 310-323
-
-
Dawlaty, M.M.1
Breiling Le, A.T.2
Raddatz, G.3
Barrasa, M.I.4
Cheng, A.W.5
Gao, Q.6
Powell, B.E.7
Li, Z.8
Xu, M.9
-
50
-
-
0030846212
-
Alterations in DNA methylation: A fundamental aspect of neoplasia
-
Baylin, S.B., Herman, J.G., Graff, J.R., Vertino, P.M. and Issa, J.P. (1998) Alterations in DNA methylation: A fundamental aspect of neoplasia. Adv. Cancer Res., 72, 141-196.
-
(1998)
Adv. Cancer Res.
, vol.72
, pp. 141-196
-
-
Baylin, S.B.1
Herman, J.G.2
Graff, J.R.3
Vertino, P.M.4
Issa, J.P.5
-
51
-
-
0034015438
-
CpG-island methylation in aging and cancer
-
Issa, J.P. (2000) CpG-island methylation in aging and cancer. Curr. Top. Microbiol. Immunol., 249, 101-118.
-
(2000)
Curr. Top. Microbiol. Immunol.
, vol.249
, pp. 101-118
-
-
Issa, J.P.1
-
52
-
-
0035328527
-
Accelerated age-related CpG island methylation in ulcerative colitis
-
Issa, J.P., Ahuja, N., Toyota, M., Bronner, M.P. and Brentnall, T.A. (2001) Accelerated age-related CpG island methylation in ulcerative colitis. Cancer Res., 61, 3573-3577.
-
(2001)
Cancer Res.
, vol.61
, pp. 3573-3577
-
-
Issa, J.P.1
Ahuja, N.2
Toyota, M.3
Bronner, M.P.4
Brentnall, T.A.5
-
53
-
-
79956330964
-
CpG islands and the regulation of transcription
-
Deaton, A.M. and Bird, A. (2011) CpG islands and the regulation of transcription. Genes Dev., 25, 1010-1022.
-
(2011)
Genes Dev.
, vol.25
, pp. 1010-1022
-
-
Deaton, A.M.1
Bird, A.2
-
54
-
-
0345357773
-
Gene silencing in cancer in association with promoter hypermethylation
-
Herman, J.G. and Baylin, S.B. (2003) Gene silencing in cancer in association with promoter hypermethylation.N. Engl. J. Med., 349, 2042-2054.
-
(2003)
N. Engl. J. Med.
, vol.349
, pp. 2042-2054
-
-
Herman, J.G.1
Baylin, S.B.2
-
55
-
-
79960927422
-
Increased methylation variation in epigenetic domains across cancer types
-
Hansen, K.D., Timp, W., Bravo, H.C., Sabunciyan, S., Langmead, B., McDonald, O.G., Wen, B., Wu, H., Liu, Y., Diep, D. et al. (2011) Increased methylation variation in epigenetic domains across cancer types. Nat. Genet., 43, 768-775.
-
(2011)
Nat. Genet.
, vol.43
, pp. 768-775
-
-
Hansen, K.D.1
Timp, W.2
Bravo, H.C.3
Sabunciyan, S.4
Langmead, B.5
McDonald, O.G.6
Wen, B.7
Wu, H.8
Liu, Y.9
Diep, D.10
-
56
-
-
0037099537
-
LCX, leukemia-associated protein with a CXXC domain, is fused to MLL in acute myeloid leukemia with trilineage dysplasia having t(10;11)(q22;q23)
-
Ono, R., Taki, T., Taketani, T., Taniwaki, M., Kobayashi, H. and Hayashi, Y. (2002) LCX, leukemia-associated protein with a CXXC domain, is fused to MLL in acute myeloid leukemia with trilineage dysplasia having t(10;11)(q22;q23). Cancer Res., 62, 4075-4080.
-
(2002)
Cancer Res.
, vol.62
, pp. 4075-4080
-
-
Ono, R.1
Taki, T.2
Taketani, T.3
Taniwaki, M.4
Kobayashi, H.5
Hayashi, Y.6
-
57
-
-
84863393235
-
Loss of 5-hydroxymethylcytosine is accompanied with malignant cellular transformation
-
Kudo, Y., Tateishi, K., Yamamoto, K., Yamamoto, S., Asaoka, Y., Ijichi, H., Nagae, G., Yoshida, H., Aburatani, H. and Koike, K. (2012) Loss of 5-hydroxymethylcytosine is accompanied with malignant cellular transformation. Cancer Sci., 103, 670-676.
-
(2012)
Cancer Sci.
, vol.103
, pp. 670-676
-
-
Kudo, Y.1
Tateishi, K.2
Yamamoto, K.3
Yamamoto, S.4
Asaoka, Y.5
Ijichi, H.6
Nagae, G.7
Yoshida, H.8
Aburatani, H.9
Koike, K.10
-
58
-
-
84865459654
-
Recurrent R-spondin fusions in colon cancer
-
Seshagiri, S., Stawiski, E.W., Durinck, S., Modrusan, Z., Storm, E.E., Conboy, C.B., Chaudhuri, S., Guan, Y., Janakiraman, V., Jaiswal, B.S. et al. (2012) Recurrent R-spondin fusions in colon cancer. Nature, 488, 660-664.
-
(2012)
Nature
, vol.488
, pp. 660-664
-
-
Seshagiri, S.1
Stawiski, E.W.2
Durinck, S.3
Modrusan, Z.4
Storm, E.E.5
Conboy, C.B.6
Chaudhuri, S.7
Guan, Y.8
Janakiraman, V.9
Jaiswal, B.S.10
-
59
-
-
84866908544
-
TET1 suppresses cancer invasion by activating the tissue inhibitors of metalloproteinases
-
Hsu, C.H., Peng, K.L., Kang, M.L., Chen, Y.R., Yang, Y.C., Tsai, C.H., Chu, C.S., Jeng, Y.M., Chen, Y.T., Lin, F.M. et al. (2012) TET1 suppresses cancer invasion by activating the tissue inhibitors of metalloproteinases. Cell Rep., 2, 568-579.
-
(2012)
Cell Rep.
, vol.2
, pp. 568-579
-
-
Hsu, C.H.1
Peng, K.L.2
Kang, M.L.3
Chen, Y.R.4
Yang, Y.C.5
Tsai, C.H.6
Chu, C.S.7
Jeng, Y.M.8
Chen, Y.T.9
Lin, F.M.10
-
60
-
-
84872953223
-
TET2 promotes histone O-GlcNAcylation during gene transcription
-
Chen, Q., Chen, Y., Bian, C., Fujiki, R. and Yu, X. (2013) TET2 promotes histone O-GlcNAcylation during gene transcription. Nature, 493, 561-564.
-
(2013)
Nature
, vol.493
, pp. 561-564
-
-
Chen, Q.1
Chen, Y.2
Bian, C.3
Fujiki, R.4
Yu, X.5
-
61
-
-
84875218124
-
TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS
-
Deplus, R., Delatte, B., Schwinn, M.K., Defrance, M., Mendez, J., Murphy, N., Dawson, M.A., Volkmar, M., Putmans, P., Calonne, E. et al. (2013) TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS. EMBO J., 32, 645-655.
-
(2013)
EMBO J.
, vol.32
, pp. 645-655
-
-
Deplus, R.1
Delatte, B.2
Schwinn, M.K.3
Defrance, M.4
Mendez, J.5
Murphy, N.6
Dawson, M.A.7
Volkmar, M.8
Putmans, P.9
Calonne, E.10
-
62
-
-
84874266225
-
Tet proteins connect the O-linked N-acetylglucosamine transferase Ogt to chromatin in embryonic stem cells
-
Vella, P., Scelfo, A., Jammula, S., Chiacchiera, F., Williams, K., Cuomo, A., Roberto, A., Christensen, J., Bonaldi, T., Helin, K. et al. (2013) Tet proteins connect the O-linked N-acetylglucosamine transferase Ogt to chromatin in embryonic stem cells. Mol. Cell, 49, 645-656.
-
(2013)
Mol. Cell
, vol.49
, pp. 645-656
-
-
Vella, P.1
Scelfo, A.2
Jammula, S.3
Chiacchiera, F.4
Williams, K.5
Cuomo, A.6
Roberto, A.7
Christensen, J.8
Bonaldi, T.9
Helin, K.10
-
63
-
-
84857150890
-
Effects of TET2 mutations on DNA methylation in chronic myelomonocytic leukemia
-
Yamazaki, J., Taby, R., Vasanthakumar, A., Macrae, T., Ostler, K.R., Shen, L., Kantarjian, H.M., Estecio, M.R., Jelinek, J., Godley, L.A. et al. (2012) Effects of TET2 mutations on DNA methylation in chronic myelomonocytic leukemia. Epigenetics, 7, 201-207.
-
(2012)
Epigenetics
, vol.7
, pp. 201-207
-
-
Yamazaki, J.1
Taby, R.2
Vasanthakumar, A.3
MacRae, T.4
Ostler, K.R.5
Shen, L.6
Kantarjian, H.M.7
Estecio, M.R.8
Jelinek, J.9
Godley, L.A.10
|